Wall clock time and date at job start Tue Mar 31 2020 23:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.86931 * 2 1 4 4 C 1.54316 * 109.88070 * 238.98671 * 2 1 3 5 5 H 1.09003 * 110.72351 * 336.59571 * 4 2 1 6 6 N 1.46898 * 110.87529 * 99.80194 * 4 2 1 7 7 C 1.46897 * 111.00341 * 200.06117 * 6 4 2 8 8 C 1.50696 * 109.47399 * 179.97438 * 7 6 4 9 9 O 1.21293 * 120.00159 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00211 * 179.97438 * 8 7 6 11 11 C 1.37096 * 120.00048 * 180.02562 * 10 8 7 12 12 H 1.07996 * 120.00341 * 0.02562 * 11 10 8 13 13 C 1.38958 * 119.99801 * 180.02562 * 11 10 8 14 14 N 1.31407 * 120.00033 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99691 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47135 * 60.00150 * 15 13 11 17 17 H 1.48506 * 109.46818 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47171 * 299.99980 * 15 13 11 19 19 C 1.55158 * 102.94139 * 218.23374 * 4 2 1 20 20 C 1.54917 * 101.57978 * 35.50252 * 19 4 2 21 21 N 1.47020 * 110.00946 * 121.09764 * 2 1 3 22 22 C 1.34776 * 125.65281 * 298.46712 * 21 2 1 23 23 O 1.21570 * 119.99647 * 359.97438 * 22 21 2 24 24 C 1.47748 * 120.00297 * 179.97438 * 22 21 2 25 25 C 1.39351 * 124.11967 * 180.02562 * 24 22 21 26 26 N 1.30086 * 112.14938 * 179.97438 * 25 24 22 27 27 S 1.55927 * 108.75383 * 359.97438 * 26 25 24 28 28 N 1.31489 * 124.11403 * 359.69687 * 24 22 21 29 29 H 1.09004 * 109.47143 * 181.01531 * 1 2 3 30 30 H 1.09003 * 109.47335 * 301.01691 * 1 2 3 31 31 H 1.08997 * 109.47552 * 61.01672 * 1 2 3 32 32 H 1.00906 * 110.99708 * 324.01952 * 6 4 2 33 33 H 1.09003 * 109.47074 * 300.00451 * 7 6 4 34 34 H 1.09005 * 109.47009 * 59.99813 * 7 6 4 35 35 H 0.97007 * 119.99953 * 0.02562 * 10 8 7 36 36 H 0.97009 * 119.99919 * 180.02562 * 14 13 11 37 37 H 1.08998 * 111.00511 * 277.42784 * 19 4 2 38 38 H 1.08996 * 111.04098 * 153.59117 * 19 4 2 39 39 H 1.08998 * 110.36726 * 81.82993 * 20 19 4 40 40 H 1.09005 * 110.36534 * 204.15515 * 20 19 4 41 41 H 1.08004 * 123.92670 * 359.93796 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2437 5 1 1.3061 -1.4456 -1.6187 6 7 2.4525 0.1988 -2.2944 7 6 2.4950 -0.4591 -3.6071 8 6 2.9052 0.5409 -4.6572 9 8 3.1396 1.6887 -4.3429 10 7 3.0126 0.1597 -5.9454 11 6 3.3863 1.0694 -6.9006 12 1 3.5950 2.0913 -6.6208 13 6 3.4965 0.6764 -8.2289 14 7 3.2420 -0.5670 -8.5695 15 14 4.0064 1.9157 -9.5303 16 1 5.3514 2.4528 -9.2023 17 1 4.0484 1.2508 -10.8575 18 1 3.0240 3.0288 -9.5657 19 6 3.2900 -1.5100 -0.6954 20 6 2.8195 -1.8769 0.7342 21 7 2.0331 -0.7135 1.1829 22 6 1.8114 -0.3627 2.4652 23 8 1.1442 0.6213 2.7194 24 6 2.3792 -1.1738 3.5618 25 6 2.2040 -0.8907 4.9150 26 7 2.8038 -1.7562 5.6788 27 16 3.5119 -2.8138 4.7780 28 7 3.1061 -2.2542 3.3799 29 1 -0.3634 -1.0275 0.0182 30 1 -0.3634 0.5296 0.8807 31 1 -0.3634 0.4979 -0.8989 32 1 1.8388 0.9996 -2.3108 33 1 3.2164 -1.2758 -3.5811 34 1 1.5078 -0.8539 -3.8478 35 1 2.8254 -0.7584 -6.1968 36 1 3.3193 -0.8414 -9.4968 37 1 4.1664 -0.8627 -0.6643 38 1 3.4894 -2.4061 -1.2831 39 1 2.1955 -2.7703 0.7107 40 1 3.6778 -2.0298 1.3885 41 1 1.6367 -0.0500 5.2865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486071051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:18 Heat of formation + Delta-G solvation = 6.001279 kcal Electronic energy + Delta-G solvation = -26367.438155 eV Core-core repulsion = 22410.001132 eV Total energy + Delta-G solvation = -3957.437023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.59096 -40.03720 -38.41222 -37.70622 -34.93559 -34.07374 -33.71240 -31.58678 -31.26117 -30.69199 -27.84147 -26.93843 -25.06845 -24.18577 -23.64085 -22.22029 -20.68916 -19.82573 -19.75058 -19.12310 -17.89880 -17.34565 -16.91178 -16.37460 -16.14715 -15.88034 -15.32398 -15.18183 -14.72342 -14.46019 -14.00298 -13.92087 -13.77246 -13.35619 -13.25209 -13.07391 -12.69270 -12.46672 -12.27836 -11.92195 -11.85959 -11.74323 -11.66322 -11.56823 -11.52762 -11.21043 -11.04034 -10.91980 -10.73116 -10.45204 -10.29601 -10.22445 -9.66213 -9.51529 -8.91627 -8.50288 -8.15940 -7.98060 -6.43218 -3.84039 -0.01553 0.94643 1.13588 1.18091 2.54138 2.77541 3.19406 3.25192 3.29685 3.88457 3.91763 4.02364 4.18832 4.27996 4.44161 4.53646 4.68155 4.92602 5.04613 5.05905 5.09844 5.18910 5.23082 5.29825 5.39451 5.52764 5.62390 5.76114 5.82570 5.84192 5.92488 5.94762 6.06507 6.09553 6.17492 6.26187 7.12362 7.15180 7.53743 7.55196 7.71950 8.04343 8.59345 9.16256 9.52278 10.03638 10.74344 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030784 B = 0.001921 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.339606 B =14572.206097 C =15000.737021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 H 0.093 0.907 4 C 0.078 3.922 5 H 0.062 0.938 6 N -0.656 5.656 7 C 0.052 3.948 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.126 4.126 20 C 0.102 3.898 21 N -0.589 5.589 22 C 0.616 3.384 23 O -0.523 6.523 24 C 0.018 3.982 25 C 0.090 3.910 26 N -0.577 5.577 27 S 0.710 5.290 28 N -0.540 5.540 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.352 0.648 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.483 -9.862 24.482 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 H 0.111 0.889 4 C -0.033 4.033 5 H 0.079 0.921 6 N -0.289 5.289 7 C -0.081 4.081 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.199 5.199 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.165 4.165 20 C -0.021 4.021 21 N -0.322 5.322 22 C 0.399 3.601 23 O -0.398 6.398 24 C -0.157 4.157 25 C -0.103 4.103 26 N -0.418 5.418 27 S 0.752 5.248 28 N -0.390 5.390 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.173 0.827 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.877 -10.379 25.371 27.426 hybrid contribution -1.757 1.177 -1.540 2.616 sum -2.633 -9.202 23.831 25.682 Atomic orbital electron populations 1.22184 0.94261 1.02393 1.03471 1.21725 0.94418 0.97289 0.83295 0.88895 1.22620 0.95908 0.93961 0.90802 0.92058 1.60150 1.57443 1.08574 1.02772 1.21709 1.00382 0.97138 0.88842 1.19771 0.85095 0.89216 0.83384 1.90534 1.55194 1.20048 1.80897 1.41851 1.59924 1.12758 1.05412 1.19655 1.42645 0.94040 0.86598 0.87954 1.25267 0.97503 0.96895 0.98274 1.69602 1.49170 1.16228 1.19307 0.85913 0.79351 0.79876 0.79053 1.19867 1.20988 1.19908 1.22940 0.98815 1.00901 0.93864 1.22626 0.96028 0.87627 0.95854 1.48196 1.51104 1.28718 1.04162 1.16316 0.80351 0.83261 0.80175 1.90840 1.39874 1.26372 1.82739 1.22474 1.02186 0.94939 0.96082 1.23778 0.99037 0.99754 0.87752 1.72268 1.17965 1.11765 1.39757 1.79184 1.37619 1.26031 0.81933 1.72755 1.17956 1.15061 1.33217 0.92485 0.90859 0.91178 0.82694 0.89470 0.93676 0.77458 0.91813 0.89214 0.89802 0.91282 0.88431 0.76897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.10 37.16 0.34 -1.43 16 2 C 0.14 1.58 2.98 -66.96 -0.20 1.38 16 3 H 0.09 1.23 7.98 -51.93 -0.41 0.82 16 4 C 0.08 0.90 2.76 -65.88 -0.18 0.72 16 5 H 0.06 0.66 7.60 -51.93 -0.39 0.27 16 6 N -0.66 -9.95 5.93 -106.06 -0.63 -10.58 16 7 C 0.05 0.86 6.02 -4.98 -0.03 0.83 16 8 C 0.44 10.12 7.82 -10.99 -0.09 10.03 16 9 O -0.58 -15.57 15.78 5.55 0.09 -15.48 16 10 N -0.56 -14.00 5.29 -10.96 -0.06 -14.05 16 11 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 12 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 15 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 C -0.13 -1.31 6.71 -24.58 -0.16 -1.47 16 20 C 0.10 0.96 6.07 -2.53 -0.02 0.94 16 21 N -0.59 -6.58 3.07 -164.16 -0.50 -7.08 16 22 C 0.62 7.29 7.65 -12.37 -0.09 7.19 16 23 O -0.52 -7.32 15.86 5.30 0.08 -7.24 16 24 C 0.02 0.18 6.71 -83.71 -0.56 -0.39 16 25 C 0.09 0.77 11.22 -17.88 -0.20 0.57 16 26 N -0.58 -4.78 11.41 19.42 0.22 -4.55 16 27 S 0.71 4.38 23.69 -107.50 -2.55 1.83 16 28 N -0.54 -4.58 8.30 23.18 0.19 -4.39 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.86 6.91 -51.93 -0.36 0.51 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.35 5.59 8.16 -39.29 -0.32 5.26 16 33 H 0.09 1.32 8.13 -51.93 -0.42 0.90 16 34 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.90 6.10 -51.93 -0.32 0.58 16 41 H 0.21 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -32.71 360.56 -8.47 -41.18 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.02 Total: 12.10 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -1.44 Total: 10.46 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -0.05 Total: -64.17 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.17 Total: -22.72 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -2.55 Total: 1.83 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.71 -8.47 -41.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486071051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.184 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds