Wall clock time and date at job start Tue Mar 31 2020 23:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.86931 * 2 1 4 4 C 1.54316 * 109.88070 * 238.98671 * 2 1 3 5 5 H 1.09003 * 110.72351 * 336.59571 * 4 2 1 6 6 N 1.46898 * 110.87529 * 99.80194 * 4 2 1 7 7 C 1.46897 * 111.00341 * 200.06117 * 6 4 2 8 8 C 1.50696 * 109.47399 * 179.97438 * 7 6 4 9 9 O 1.21293 * 120.00159 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00211 * 179.97438 * 8 7 6 11 11 C 1.37096 * 120.00048 * 180.02562 * 10 8 7 12 12 H 1.07996 * 120.00341 * 0.02562 * 11 10 8 13 13 C 1.38958 * 119.99801 * 180.02562 * 11 10 8 14 14 N 1.31407 * 120.00033 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99691 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47135 * 60.00150 * 15 13 11 17 17 H 1.48506 * 109.46818 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47171 * 299.99980 * 15 13 11 19 19 C 1.55158 * 102.94139 * 218.23374 * 4 2 1 20 20 C 1.54917 * 101.57978 * 35.50252 * 19 4 2 21 21 N 1.47020 * 110.00946 * 121.09764 * 2 1 3 22 22 C 1.34776 * 125.65281 * 298.46712 * 21 2 1 23 23 O 1.21570 * 119.99647 * 359.97438 * 22 21 2 24 24 C 1.47748 * 120.00297 * 179.97438 * 22 21 2 25 25 C 1.39351 * 124.11967 * 180.02562 * 24 22 21 26 26 N 1.30086 * 112.14938 * 179.97438 * 25 24 22 27 27 S 1.55927 * 108.75383 * 359.97438 * 26 25 24 28 28 N 1.31489 * 124.11403 * 359.69687 * 24 22 21 29 29 H 1.09004 * 109.47143 * 181.01531 * 1 2 3 30 30 H 1.09003 * 109.47335 * 301.01691 * 1 2 3 31 31 H 1.08997 * 109.47552 * 61.01672 * 1 2 3 32 32 H 1.00906 * 110.99708 * 324.01952 * 6 4 2 33 33 H 1.09003 * 109.47074 * 300.00451 * 7 6 4 34 34 H 1.09005 * 109.47009 * 59.99813 * 7 6 4 35 35 H 0.97007 * 119.99953 * 0.02562 * 10 8 7 36 36 H 0.97009 * 119.99919 * 180.02562 * 14 13 11 37 37 H 1.08998 * 111.00511 * 277.42784 * 19 4 2 38 38 H 1.08996 * 111.04098 * 153.59117 * 19 4 2 39 39 H 1.08998 * 110.36726 * 81.82993 * 20 19 4 40 40 H 1.09005 * 110.36534 * 204.15515 * 20 19 4 41 41 H 1.08004 * 123.92670 * 359.93796 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2437 5 1 1.3061 -1.4456 -1.6187 6 7 2.4525 0.1988 -2.2944 7 6 2.4950 -0.4591 -3.6071 8 6 2.9052 0.5409 -4.6572 9 8 3.1396 1.6887 -4.3429 10 7 3.0126 0.1597 -5.9454 11 6 3.3863 1.0694 -6.9006 12 1 3.5950 2.0913 -6.6208 13 6 3.4965 0.6764 -8.2289 14 7 3.2420 -0.5670 -8.5695 15 14 4.0064 1.9157 -9.5303 16 1 5.3514 2.4528 -9.2023 17 1 4.0484 1.2508 -10.8575 18 1 3.0240 3.0288 -9.5657 19 6 3.2900 -1.5100 -0.6954 20 6 2.8195 -1.8769 0.7342 21 7 2.0331 -0.7135 1.1829 22 6 1.8114 -0.3627 2.4652 23 8 1.1442 0.6213 2.7194 24 6 2.3792 -1.1738 3.5618 25 6 2.2040 -0.8907 4.9150 26 7 2.8038 -1.7562 5.6788 27 16 3.5119 -2.8138 4.7780 28 7 3.1061 -2.2542 3.3799 29 1 -0.3634 -1.0275 0.0182 30 1 -0.3634 0.5296 0.8807 31 1 -0.3634 0.4979 -0.8989 32 1 1.8388 0.9996 -2.3108 33 1 3.2164 -1.2758 -3.5811 34 1 1.5078 -0.8539 -3.8478 35 1 2.8254 -0.7584 -6.1968 36 1 3.3193 -0.8414 -9.4968 37 1 4.1664 -0.8627 -0.6643 38 1 3.4894 -2.4061 -1.2831 39 1 2.1955 -2.7703 0.7107 40 1 3.6778 -2.0298 1.3885 41 1 1.6367 -0.0500 5.2865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486071051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:17 Heat of formation + Delta-G solvation = -19.623186 kcal Electronic energy + Delta-G solvation = -26368.549315 eV Core-core repulsion = 22410.001132 eV Total energy + Delta-G solvation = -3958.548183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.29727 -40.89447 -40.07005 -38.81003 -36.24319 -35.64147 -34.66137 -33.25432 -32.43139 -31.72026 -28.72940 -28.18457 -26.49533 -25.22812 -24.74136 -23.02260 -21.58602 -21.14555 -20.43762 -20.36102 -19.85085 -18.20182 -17.86931 -17.63299 -17.09519 -16.85074 -16.62528 -16.33968 -15.98571 -15.89109 -15.42570 -15.30765 -14.73825 -14.48364 -14.35365 -14.17052 -13.89417 -13.48798 -13.36900 -13.21220 -13.11347 -12.83880 -12.76669 -12.62190 -12.41910 -12.34751 -12.26857 -12.12859 -12.06400 -11.78477 -11.59948 -11.48822 -11.14253 -10.33212 -10.26989 -10.00039 -9.76637 -9.37756 -8.45371 -5.93680 -0.66354 0.34111 0.43464 0.62657 1.40684 1.42759 1.53250 1.72040 1.94939 2.07498 2.30295 2.90328 3.17502 3.22264 3.45900 3.50875 3.59771 3.69621 4.02303 4.03519 4.23262 4.29706 4.32926 4.38350 4.46713 4.51991 4.54859 4.62841 4.73869 4.87790 4.96580 5.02683 5.15737 5.21828 5.27642 5.39709 5.42387 5.89667 6.10626 6.27175 6.35435 6.61911 6.85132 7.14339 7.58325 8.13969 8.71597 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030784 B = 0.001921 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.339606 B =14572.206097 C =15000.737021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.068 0.932 4 C 0.083 3.917 5 H 0.082 0.918 6 N -0.671 5.671 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.273 1.273 19 C -0.123 4.123 20 C 0.108 3.892 21 N -0.592 5.592 22 C 0.613 3.387 23 O -0.555 6.555 24 C -0.002 4.002 25 C 0.089 3.911 26 N -0.600 5.600 27 S 0.793 5.207 28 N -0.553 5.553 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.346 0.654 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.397 0.603 36 H 0.278 0.722 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -12.045 24.964 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.033 3.967 3 H 0.087 0.913 4 C -0.027 4.027 5 H 0.099 0.901 6 N -0.304 5.304 7 C -0.064 4.064 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.096 0.904 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.198 1.198 19 C -0.161 4.161 20 C -0.014 4.014 21 N -0.324 5.324 22 C 0.396 3.604 23 O -0.433 6.433 24 C -0.174 4.174 25 C -0.103 4.103 26 N -0.442 5.442 27 S 0.834 5.166 28 N -0.405 5.405 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.165 0.835 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.120 0.880 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.663 -12.592 25.859 28.769 hybrid contribution -1.752 1.767 -1.564 2.940 sum -2.415 -10.824 24.294 26.706 Atomic orbital electron populations 1.22101 0.93509 1.02933 1.02944 1.21618 0.94966 0.96257 0.83864 0.91349 1.22654 0.97054 0.93444 0.89543 0.90052 1.60138 1.58141 1.09277 1.02845 1.21563 1.02094 0.95378 0.87361 1.20904 0.83031 0.89786 0.83811 1.90505 1.56544 1.22453 1.81637 1.41912 1.60548 1.12603 1.05912 1.19608 1.44810 0.93816 0.88100 0.90441 1.26010 0.96958 0.98722 0.99553 1.69657 1.49073 1.17215 1.20013 0.85017 0.78765 0.77780 0.76948 1.19821 1.19487 1.19788 1.22933 0.97413 1.01091 0.94711 1.22687 0.96253 0.87405 0.95090 1.48278 1.51105 1.29082 1.03922 1.16620 0.79934 0.83088 0.80710 1.90812 1.41367 1.27825 1.83317 1.22110 1.03835 0.95727 0.95735 1.23807 0.99052 1.00055 0.87362 1.72170 1.18740 1.12564 1.40699 1.78881 1.34538 1.23418 0.79740 1.72527 1.17916 1.14869 1.35215 0.91264 0.92358 0.90768 0.83475 0.87286 0.91037 0.76864 0.91304 0.91112 0.87788 0.89563 0.88035 0.76230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.10 71.98 0.66 -2.61 16 2 C 0.14 3.13 2.98 45.34 0.14 3.26 16 3 H 0.07 1.90 7.98 -2.39 -0.02 1.88 16 4 C 0.08 1.79 2.76 46.10 0.13 1.91 16 5 H 0.08 1.48 7.60 -2.39 -0.02 1.47 16 6 N -0.67 -19.81 5.93 -489.46 -2.90 -22.71 16 7 C 0.07 2.15 6.02 85.56 0.52 2.67 16 8 C 0.44 20.18 7.82 87.66 0.69 20.87 16 9 O -0.62 -34.23 15.78 -3.07 -0.05 -34.28 16 10 N -0.57 -28.69 5.29 -306.99 -1.62 -30.32 16 11 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 12 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 13 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 14 N -0.92 -48.84 13.05 21.67 0.28 -48.56 16 15 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 C -0.12 -2.29 6.71 31.99 0.21 -2.08 16 20 C 0.11 1.81 6.07 86.86 0.53 2.34 16 21 N -0.59 -12.80 3.07 -791.54 -2.43 -15.23 16 22 C 0.61 14.46 7.65 86.76 0.66 15.12 16 23 O -0.56 -16.06 15.86 -3.94 -0.06 -16.12 16 24 C 0.00 -0.03 6.71 41.98 0.28 0.25 16 25 C 0.09 1.44 11.22 85.22 0.96 2.39 16 26 N -0.60 -8.92 11.41 -92.46 -1.05 -9.97 16 27 S 0.79 7.81 23.69 -56.49 -1.34 6.47 16 28 N -0.55 -8.30 8.30 -80.58 -0.67 -8.96 16 29 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.06 1.40 6.91 -2.39 -0.02 1.38 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.35 11.01 8.16 -89.69 -0.73 10.28 16 33 H 0.11 3.01 8.13 -2.39 -0.02 3.00 16 34 H 0.07 1.92 8.09 -2.38 -0.02 1.91 16 35 H 0.40 18.73 7.90 -92.70 -0.73 18.00 16 36 H 0.28 13.86 8.31 -92.70 -0.77 13.08 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.10 1.66 6.10 -2.38 -0.01 1.64 16 41 H 0.22 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -71.77 360.56 -2.14 -73.90 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.36 Total: 35.11 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 6.04 Total: 25.98 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -8.40 Total: -135.76 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.11 Total: -50.40 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 7.81 SS G_CDS: -1.34 Total: 6.47 kcal Total: -71.77 -2.14 -73.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486071051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.281 kcal (2) G-P(sol) polarization free energy of solvation -71.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds