Wall clock time and date at job start Tue Mar 31 2020 23:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.00143 * 2 1 4 4 C 1.54324 * 109.88081 * 121.09650 * 2 1 3 5 5 H 1.08999 * 110.72313 * 23.24573 * 4 2 1 6 6 N 1.46896 * 110.71894 * 259.97370 * 4 2 1 7 7 C 1.46900 * 111.00010 * 155.00280 * 6 4 2 8 8 C 1.50701 * 109.47010 * 179.97438 * 7 6 4 9 9 O 1.21295 * 120.00125 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99936 * 180.02562 * 8 7 6 11 11 C 1.37096 * 120.00105 * 180.02562 * 10 8 7 12 12 H 1.07998 * 119.99721 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99997 * 179.97438 * 11 10 8 14 14 N 1.31416 * 120.00133 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99850 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47063 * 89.99918 * 15 13 11 17 17 H 1.48501 * 109.46780 * 210.00124 * 15 13 11 18 18 H 1.48504 * 109.47038 * 329.99705 * 15 13 11 19 19 C 1.55160 * 102.93952 * 141.60757 * 4 2 1 20 20 C 1.55125 * 101.48832 * 324.33232 * 19 4 2 21 21 N 1.47029 * 109.87903 * 238.90260 * 2 1 3 22 22 C 1.34777 * 125.64962 * 61.61215 * 21 2 1 23 23 O 1.21563 * 119.99399 * 359.97438 * 22 21 2 24 24 C 1.47748 * 119.99787 * 179.97438 * 22 21 2 25 25 C 1.39353 * 124.11430 * 179.97438 * 24 22 21 26 26 N 1.30086 * 112.14748 * 179.97438 * 25 24 22 27 27 S 1.55927 * 108.75510 * 0.02562 * 26 25 24 28 28 N 1.31485 * 124.11997 * 359.97438 * 24 22 21 29 29 H 1.08996 * 109.47154 * 179.63945 * 1 2 3 30 30 H 1.08999 * 109.46938 * 299.64187 * 1 2 3 31 31 H 1.09000 * 109.46856 * 59.64292 * 1 2 3 32 32 H 1.00904 * 110.99481 * 278.95339 * 6 4 2 33 33 H 1.09000 * 109.47057 * 299.99765 * 7 6 4 34 34 H 1.09001 * 109.47278 * 59.99527 * 7 6 4 35 35 H 0.96997 * 120.00037 * 359.97438 * 10 8 7 36 36 H 0.96995 * 119.99817 * 180.02562 * 14 13 11 37 37 H 1.08999 * 111.00226 * 82.57386 * 19 4 2 38 38 H 1.09005 * 111.00130 * 206.38319 * 19 4 2 39 39 H 1.09002 * 110.49616 * 278.45161 * 20 19 4 40 40 H 1.09000 * 110.34527 * 156.06171 * 20 19 4 41 41 H 1.08002 * 123.92490 * 359.96284 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 1.3051 -1.4459 1.6183 6 7 2.4565 0.1986 2.2903 7 6 2.3872 -0.4243 3.6189 8 6 2.8060 0.5761 4.6653 9 8 3.1308 1.6975 4.3365 10 7 2.8206 0.2243 5.9662 11 6 3.2011 1.1346 6.9182 12 1 3.4895 2.1333 6.6255 13 6 3.2157 0.7721 8.2595 14 7 2.8642 -0.4431 8.6157 15 14 3.7348 2.0121 9.5565 16 1 2.5436 2.7626 10.0286 17 1 4.3569 1.2998 10.7014 18 1 4.7167 2.9597 8.9705 19 6 3.2876 -1.5143 0.6923 20 6 2.8099 -1.8826 -0.7369 21 7 2.0300 -0.7141 -1.1840 22 6 1.8074 -0.3621 -2.4658 23 8 1.1414 0.6229 -2.7186 24 6 2.3729 -1.1734 -3.5635 25 6 2.1967 -0.8891 -4.9163 26 7 2.7953 -1.7544 -5.6813 27 16 3.5036 -2.8131 -4.7820 28 7 3.1037 -2.2515 -3.3830 29 1 -0.3633 -1.0276 -0.0065 30 1 -0.3633 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8868 32 1 3.3790 0.5661 2.1110 33 1 1.3654 -0.7494 3.8149 34 1 3.0549 -1.2852 3.6519 35 1 2.5612 -0.6726 6.2291 36 1 2.8741 -0.6960 9.5520 37 1 4.1654 -0.8689 0.6603 38 1 3.4855 -2.4108 1.2800 39 1 2.1801 -2.7719 -0.7115 40 1 3.6655 -2.0413 -1.3933 41 1 1.6289 -0.0483 -5.2866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486071052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:21 Heat of formation + Delta-G solvation = 5.851624 kcal Electronic energy + Delta-G solvation = -26366.129181 eV Core-core repulsion = 22408.685668 eV Total energy + Delta-G solvation = -3957.443513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.59161 -40.03430 -38.42662 -37.71188 -34.93309 -34.08085 -33.72477 -31.48896 -31.27446 -30.66639 -27.84263 -26.91684 -25.01316 -24.19260 -23.46878 -22.32661 -20.98769 -19.84062 -19.64243 -19.16298 -17.92387 -17.43726 -16.87478 -16.35126 -16.03134 -15.86641 -15.25033 -15.19736 -14.56532 -14.54126 -13.99297 -13.92336 -13.73202 -13.43715 -13.26291 -12.87108 -12.63377 -12.42988 -12.26007 -12.05607 -11.81365 -11.70822 -11.65560 -11.60103 -11.52275 -11.33224 -11.11885 -11.00062 -10.74496 -10.40654 -10.29160 -10.23287 -9.66610 -9.52815 -8.89132 -8.50500 -8.11064 -7.98121 -6.43670 -3.84444 -0.02319 0.93872 1.13708 1.17413 2.56795 2.78983 3.16928 3.25761 3.31516 3.87844 3.92959 4.00123 4.18929 4.26546 4.37449 4.62968 4.67625 4.90003 5.04565 5.05120 5.09399 5.16024 5.24189 5.36565 5.44560 5.56203 5.62051 5.71673 5.77640 5.85140 5.91866 5.93865 6.03840 6.21239 6.21794 6.27265 7.12417 7.16973 7.53645 7.54896 7.74778 8.04205 8.58899 9.16016 9.51933 10.03178 10.73982 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031818 B = 0.001911 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.797224 B =14644.873548 C =15032.828790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.092 0.908 4 C 0.083 3.917 5 H 0.096 0.904 6 N -0.657 5.657 7 C 0.052 3.948 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.170 4.170 20 C 0.105 3.895 21 N -0.593 5.593 22 C 0.616 3.384 23 O -0.521 6.521 24 C 0.018 3.982 25 C 0.090 3.910 26 N -0.576 5.576 27 S 0.708 5.292 28 N -0.541 5.541 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.354 0.646 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.309 -10.578 -24.599 26.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.029 4.029 5 H 0.114 0.886 6 N -0.288 5.288 7 C -0.080 4.080 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.194 1.194 19 C -0.210 4.210 20 C -0.018 4.018 21 N -0.326 5.326 22 C 0.398 3.602 23 O -0.396 6.396 24 C -0.157 4.157 25 C -0.103 4.103 26 N -0.417 5.417 27 S 0.750 5.250 28 N -0.391 5.391 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.174 0.826 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 0.067 -10.725 -25.322 27.499 hybrid contribution -0.108 0.691 1.304 1.480 sum -0.041 -10.034 -24.017 26.029 Atomic orbital electron populations 1.22081 0.94002 1.01922 1.03540 1.21637 0.94960 0.96982 0.82361 0.88989 1.22688 0.96417 0.92586 0.91169 0.88600 1.59929 1.35027 1.34006 0.99874 1.21695 1.01774 0.95599 0.88938 1.19786 0.85088 0.89136 0.83481 1.90536 1.53377 1.21819 1.80943 1.41858 1.58877 1.14648 1.04589 1.19703 1.41491 0.95786 0.85882 0.87903 1.25268 0.97474 0.97000 0.98229 1.69610 1.48232 1.18103 1.18355 0.85852 0.78882 0.79879 0.79652 1.20370 1.20952 1.19421 1.23680 0.99311 1.02139 0.95835 1.22542 0.96191 0.87805 0.95306 1.48325 1.51408 1.28441 1.04467 1.16308 0.80397 0.83311 0.80177 1.90844 1.39742 1.26283 1.82723 1.22522 1.01991 0.94991 0.96162 1.23790 0.99006 0.99782 0.87751 1.72271 1.18008 1.11689 1.39737 1.79179 1.37790 1.26012 0.81999 1.72752 1.18032 1.15153 1.33170 0.92940 0.90556 0.91365 0.82553 0.89439 0.93648 0.77460 0.91868 0.90124 0.89521 0.91127 0.88550 0.76872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.10 37.16 0.34 -1.49 16 2 C 0.14 1.72 3.21 -66.95 -0.22 1.50 16 3 H 0.09 1.28 8.03 -51.93 -0.42 0.87 16 4 C 0.08 0.94 2.80 -65.88 -0.18 0.76 16 5 H 0.10 1.01 7.54 -51.93 -0.39 0.62 16 6 N -0.66 -9.81 5.93 -106.05 -0.63 -10.44 16 7 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 8 C 0.44 10.05 7.82 -10.98 -0.09 9.97 16 9 O -0.58 -15.52 15.78 5.54 0.09 -15.43 16 10 N -0.56 -13.95 5.29 -10.96 -0.06 -14.00 16 11 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 12 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 13 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 14 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 15 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 C -0.17 -1.58 6.68 -24.46 -0.16 -1.75 16 20 C 0.11 0.95 6.10 -2.41 -0.01 0.93 16 21 N -0.59 -6.57 3.06 -164.01 -0.50 -7.07 16 22 C 0.62 7.30 7.65 -12.37 -0.09 7.20 16 23 O -0.52 -7.40 15.84 5.31 0.08 -7.32 16 24 C 0.02 0.18 6.71 -83.71 -0.56 -0.38 16 25 C 0.09 0.77 11.22 -17.88 -0.20 0.57 16 26 N -0.58 -4.76 11.41 19.43 0.22 -4.54 16 27 S 0.71 4.32 23.69 -107.50 -2.55 1.77 16 28 N -0.54 -4.53 8.29 23.18 0.19 -4.34 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.87 6.88 -51.93 -0.36 0.51 16 32 H 0.35 5.54 7.91 -39.29 -0.31 5.23 16 33 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.08 0.80 7.77 -51.93 -0.40 0.39 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.85 6.07 -51.93 -0.32 0.53 16 41 H 0.21 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -32.66 360.11 -8.46 -41.12 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -4.98 Total: 12.21 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -1.45 Total: 10.23 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -0.05 Total: -63.87 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.17 Total: -22.75 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -2.55 Total: 1.77 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.66 -8.46 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486071052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.971 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds