Wall clock time and date at job start Tue Mar 31 2020 23:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.00143 * 2 1 4 4 C 1.54324 * 109.88081 * 121.09650 * 2 1 3 5 5 H 1.08999 * 110.72313 * 23.24573 * 4 2 1 6 6 N 1.46896 * 110.71894 * 259.97370 * 4 2 1 7 7 C 1.46900 * 111.00010 * 155.00280 * 6 4 2 8 8 C 1.50701 * 109.47010 * 179.97438 * 7 6 4 9 9 O 1.21295 * 120.00125 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99936 * 180.02562 * 8 7 6 11 11 C 1.37096 * 120.00105 * 180.02562 * 10 8 7 12 12 H 1.07998 * 119.99721 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99997 * 179.97438 * 11 10 8 14 14 N 1.31416 * 120.00133 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99850 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47063 * 89.99918 * 15 13 11 17 17 H 1.48501 * 109.46780 * 210.00124 * 15 13 11 18 18 H 1.48504 * 109.47038 * 329.99705 * 15 13 11 19 19 C 1.55160 * 102.93952 * 141.60757 * 4 2 1 20 20 C 1.55125 * 101.48832 * 324.33232 * 19 4 2 21 21 N 1.47029 * 109.87903 * 238.90260 * 2 1 3 22 22 C 1.34777 * 125.64962 * 61.61215 * 21 2 1 23 23 O 1.21563 * 119.99399 * 359.97438 * 22 21 2 24 24 C 1.47748 * 119.99787 * 179.97438 * 22 21 2 25 25 C 1.39353 * 124.11430 * 179.97438 * 24 22 21 26 26 N 1.30086 * 112.14748 * 179.97438 * 25 24 22 27 27 S 1.55927 * 108.75510 * 0.02562 * 26 25 24 28 28 N 1.31485 * 124.11997 * 359.97438 * 24 22 21 29 29 H 1.08996 * 109.47154 * 179.63945 * 1 2 3 30 30 H 1.08999 * 109.46938 * 299.64187 * 1 2 3 31 31 H 1.09000 * 109.46856 * 59.64292 * 1 2 3 32 32 H 1.00904 * 110.99481 * 278.95339 * 6 4 2 33 33 H 1.09000 * 109.47057 * 299.99765 * 7 6 4 34 34 H 1.09001 * 109.47278 * 59.99527 * 7 6 4 35 35 H 0.96997 * 120.00037 * 359.97438 * 10 8 7 36 36 H 0.96995 * 119.99817 * 180.02562 * 14 13 11 37 37 H 1.08999 * 111.00226 * 82.57386 * 19 4 2 38 38 H 1.09005 * 111.00130 * 206.38319 * 19 4 2 39 39 H 1.09002 * 110.49616 * 278.45161 * 20 19 4 40 40 H 1.09000 * 110.34527 * 156.06171 * 20 19 4 41 41 H 1.08002 * 123.92490 * 359.96284 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 1.3051 -1.4459 1.6183 6 7 2.4565 0.1986 2.2903 7 6 2.3872 -0.4243 3.6189 8 6 2.8060 0.5761 4.6653 9 8 3.1308 1.6975 4.3365 10 7 2.8206 0.2243 5.9662 11 6 3.2011 1.1346 6.9182 12 1 3.4895 2.1333 6.6255 13 6 3.2157 0.7721 8.2595 14 7 2.8642 -0.4431 8.6157 15 14 3.7348 2.0121 9.5565 16 1 2.5436 2.7626 10.0286 17 1 4.3569 1.2998 10.7014 18 1 4.7167 2.9597 8.9705 19 6 3.2876 -1.5143 0.6923 20 6 2.8099 -1.8826 -0.7369 21 7 2.0300 -0.7141 -1.1840 22 6 1.8074 -0.3621 -2.4658 23 8 1.1414 0.6229 -2.7186 24 6 2.3729 -1.1734 -3.5635 25 6 2.1967 -0.8891 -4.9163 26 7 2.7953 -1.7544 -5.6813 27 16 3.5036 -2.8131 -4.7820 28 7 3.1037 -2.2515 -3.3830 29 1 -0.3633 -1.0276 -0.0065 30 1 -0.3633 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8868 32 1 3.3790 0.5661 2.1110 33 1 1.3654 -0.7494 3.8149 34 1 3.0549 -1.2852 3.6519 35 1 2.5612 -0.6726 6.2291 36 1 2.8741 -0.6960 9.5520 37 1 4.1654 -0.8689 0.6603 38 1 3.4855 -2.4108 1.2800 39 1 2.1801 -2.7719 -0.7115 40 1 3.6655 -2.0413 -1.3933 41 1 1.6289 -0.0483 -5.2866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486071052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:21 Heat of formation + Delta-G solvation = -19.777844 kcal Electronic energy + Delta-G solvation = -26367.240558 eV Core-core repulsion = 22408.685668 eV Total energy + Delta-G solvation = -3958.554890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.29529 -40.89071 -40.06511 -38.82163 -36.23456 -35.63497 -34.67082 -33.24970 -32.35935 -31.68697 -28.72166 -28.16124 -26.47731 -25.20607 -24.58028 -23.09491 -21.87319 -21.10735 -20.43417 -20.31295 -19.87339 -18.32553 -17.77849 -17.58731 -17.09289 -16.82269 -16.51179 -16.30800 -15.98107 -15.84135 -15.39266 -15.23509 -14.91311 -14.43701 -14.20852 -14.07880 -13.84158 -13.48669 -13.37773 -13.19792 -13.09506 -12.92711 -12.74324 -12.59969 -12.40892 -12.40226 -12.28639 -12.11978 -12.07290 -11.98691 -11.56915 -11.49211 -11.15476 -10.32977 -10.27008 -9.99531 -9.74820 -9.28791 -8.45412 -5.93552 -0.66761 0.33598 0.43552 0.62388 1.38825 1.42845 1.54997 1.74274 1.95982 2.07928 2.30385 2.90345 3.21603 3.22940 3.43033 3.50324 3.59809 3.82024 4.01822 4.03719 4.22646 4.26770 4.35718 4.43215 4.46615 4.52724 4.58280 4.65865 4.73192 4.86860 5.01386 5.04788 5.08961 5.21876 5.28196 5.40823 5.42795 5.90876 6.11561 6.32348 6.35249 6.62244 6.87342 7.14762 7.58858 8.14545 8.71797 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031818 B = 0.001911 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.797224 B =14644.873548 C =15032.828790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.064 0.936 4 C 0.089 3.911 5 H 0.113 0.887 6 N -0.673 5.673 7 C 0.069 3.931 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.332 4.332 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.274 1.274 19 C -0.161 4.161 20 C 0.109 3.891 21 N -0.594 5.594 22 C 0.612 3.388 23 O -0.556 6.556 24 C -0.001 4.001 25 C 0.088 3.912 26 N -0.600 5.600 27 S 0.792 5.208 28 N -0.553 5.553 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.347 0.653 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 -12.944 -25.074 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 H 0.082 0.918 4 C -0.022 4.022 5 H 0.131 0.869 6 N -0.305 5.305 7 C -0.063 4.063 8 C 0.224 3.776 9 O -0.512 6.512 10 N -0.210 5.210 11 C -0.462 4.462 12 H 0.095 0.905 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.199 1.199 19 C -0.201 4.201 20 C -0.014 4.014 21 N -0.327 5.327 22 C 0.395 3.605 23 O -0.434 6.434 24 C -0.174 4.174 25 C -0.103 4.103 26 N -0.442 5.442 27 S 0.834 5.166 28 N -0.405 5.405 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.167 0.833 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.104 0.896 40 H 0.120 0.880 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.520 -13.121 -25.800 28.950 hybrid contribution -0.190 1.341 1.321 1.892 sum 0.330 -11.780 -24.479 27.168 Atomic orbital electron populations 1.21991 0.93815 1.02522 1.02441 1.21509 0.95085 0.95991 0.83415 0.91784 1.22678 0.97735 0.92085 0.89727 0.86916 1.59867 1.34839 1.35606 1.00140 1.21548 1.03276 0.94094 0.87363 1.20948 0.83008 0.89689 0.83919 1.90508 1.54775 1.24236 1.81681 1.41918 1.59504 1.14495 1.05105 1.19637 1.43553 0.95658 0.87365 0.90482 1.26003 0.96990 0.98792 0.99478 1.69662 1.48184 1.19045 1.19089 0.84959 0.78497 0.77751 0.77325 1.19800 1.19515 1.19877 1.23634 0.97888 1.02443 0.96107 1.22649 0.96374 0.87374 0.94959 1.48375 1.51371 1.28847 1.04061 1.16628 0.79947 0.83117 0.80772 1.90816 1.41347 1.27855 1.83353 1.22124 1.03681 0.95801 0.95749 1.23808 0.99046 1.00086 0.87389 1.72167 1.18793 1.12500 1.40707 1.78874 1.34639 1.23345 0.79787 1.72522 1.17936 1.14906 1.35146 0.91394 0.91163 0.92929 0.83309 0.87410 0.90660 0.76852 0.91325 0.90858 0.87384 0.89584 0.88045 0.76289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.10 71.98 0.66 -2.80 16 2 C 0.14 3.41 3.21 45.34 0.15 3.55 16 3 H 0.06 1.87 8.03 -2.39 -0.02 1.86 16 4 C 0.09 1.85 2.80 46.11 0.13 1.98 16 5 H 0.11 2.02 7.54 -2.39 -0.02 2.01 16 6 N -0.67 -19.54 5.93 -489.45 -2.90 -22.45 16 7 C 0.07 2.15 6.03 85.56 0.52 2.66 16 8 C 0.44 20.04 7.82 87.66 0.69 20.72 16 9 O -0.63 -34.17 15.78 -3.08 -0.05 -34.21 16 10 N -0.57 -28.59 5.29 -306.98 -1.62 -30.21 16 11 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 12 H 0.08 4.65 7.16 -2.91 -0.02 4.62 16 13 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 14 N -0.92 -48.77 13.05 21.66 0.28 -48.48 16 15 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 19 C -0.16 -2.61 6.68 32.06 0.21 -2.40 16 20 C 0.11 1.72 6.10 86.93 0.53 2.25 16 21 N -0.59 -12.74 3.06 -791.09 -2.42 -15.16 16 22 C 0.61 14.51 7.65 86.76 0.66 15.18 16 23 O -0.56 -16.42 15.84 -3.91 -0.06 -16.49 16 24 C 0.00 -0.02 6.71 41.98 0.28 0.26 16 25 C 0.09 1.43 11.22 85.22 0.96 2.39 16 26 N -0.60 -8.87 11.41 -92.46 -1.05 -9.93 16 27 S 0.79 7.61 23.69 -56.49 -1.34 6.27 16 28 N -0.55 -8.10 8.29 -80.58 -0.67 -8.76 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.38 6.88 -2.39 -0.02 1.36 16 32 H 0.35 10.86 7.91 -89.69 -0.71 10.15 16 33 H 0.11 2.96 8.08 -2.39 -0.02 2.94 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.40 18.63 7.90 -92.71 -0.73 17.90 16 36 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 37 H 0.07 1.33 7.77 -2.39 -0.02 1.31 16 38 H 0.11 1.34 8.14 -2.38 -0.02 1.33 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 1.54 6.07 -2.39 -0.01 1.53 16 41 H 0.22 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -72.11 360.11 -2.09 -74.21 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.34 Total: 34.81 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: 6.06 Total: 25.73 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -8.39 Total: -135.00 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.11 Total: -50.70 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 7.61 SS G_CDS: -1.34 Total: 6.27 kcal Total: -72.11 -2.09 -74.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486071052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.429 kcal (2) G-P(sol) polarization free energy of solvation -72.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds