Wall clock time and date at job start Tue Mar 31 2020 22:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99437 * 2 1 4 4 H 1.48504 * 109.46626 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47188 * 299.99394 * 3 2 1 6 6 H 1.48502 * 109.47336 * 59.99945 * 3 2 1 7 7 C 1.38800 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99201 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00163 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99957 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46911 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99948 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99369 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99390 * 180.02562 * 13 11 10 15 15 H 1.09000 * 112.91246 * 23.74616 * 14 13 11 16 16 C 1.53786 * 113.61518 * 154.99856 * 14 13 11 17 17 C 1.53781 * 87.17350 * 89.15486 * 16 14 13 18 18 H 1.08997 * 113.61223 * 270.84552 * 17 16 14 19 19 C 1.52998 * 113.61406 * 140.02181 * 17 16 14 20 20 N 1.46499 * 109.46882 * 174.99788 * 19 17 16 21 21 C 1.34783 * 119.99918 * 180.02562 * 20 19 17 22 22 O 1.21616 * 119.99744 * 0.02562 * 21 20 19 23 23 C 1.47229 * 119.99942 * 180.02562 * 21 20 19 24 24 C 1.37015 * 127.18617 * 180.02562 * 23 21 20 25 25 N 1.33320 * 106.36942 * 179.97438 * 24 23 21 26 26 N 1.28510 * 109.43993 * 359.97438 * 25 24 23 27 27 N 1.28713 * 110.63966 * 359.75379 * 26 25 24 28 28 H 0.97000 * 126.03879 * 180.25987 * 27 26 25 29 29 C 1.53782 * 87.08260 * 25.39213 * 17 16 14 30 30 H 0.96996 * 120.00220 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46960 * 60.00095 * 10 9 7 32 32 H 1.09002 * 109.47109 * 300.00232 * 10 9 7 33 33 H 0.97001 * 120.00492 * 359.97438 * 13 11 10 34 34 H 1.09002 * 113.61357 * 334.56403 * 16 14 13 35 35 H 1.09002 * 113.61608 * 203.74565 * 16 14 13 36 36 H 1.08995 * 109.47742 * 295.00269 * 19 17 16 37 37 H 1.09003 * 109.47049 * 55.00287 * 19 17 16 38 38 H 0.96999 * 120.00576 * 0.02562 * 20 19 17 39 39 H 1.07999 * 126.81271 * 359.92650 * 24 23 21 40 40 H 1.08997 * 113.61668 * 89.11298 * 29 17 16 41 41 H 1.08998 * 113.61674 * 219.93807 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5022 0.0011 13 7 2.8444 -6.3430 0.0018 14 6 2.3307 -7.7149 0.0019 15 1 1.3214 -7.7902 -0.4029 16 6 3.3109 -8.7398 -0.5930 17 6 3.8847 -8.9001 0.8247 18 1 4.6925 -8.2038 1.0500 19 6 4.2283 -10.3463 1.1870 20 7 4.8746 -10.3801 2.5013 21 6 5.2684 -11.5563 3.0286 22 8 5.0876 -12.5895 2.4131 23 6 5.9173 -11.5903 4.3497 24 6 6.3732 -12.6948 5.0202 25 7 6.8836 -12.2524 6.1697 26 7 6.7637 -10.9742 6.2270 27 7 6.1975 -10.5234 5.1627 28 1 6.0014 -9.5930 4.9710 29 6 2.5129 -8.4416 1.3469 30 1 -0.4850 0.8400 -0.0004 31 1 3.1246 -3.7312 0.8906 32 1 3.1246 -3.7312 -0.8894 33 1 3.8012 -6.1834 0.0015 34 1 4.0161 -8.3083 -1.3033 35 1 2.8256 -9.6393 -0.9718 36 1 3.3151 -10.9405 1.2157 37 1 4.9058 -10.7572 0.4384 38 1 5.0191 -9.5560 2.9921 39 1 6.3275 -13.7203 4.6845 40 1 1.8081 -9.2590 1.4990 41 1 2.5737 -7.7704 2.2036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487398600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:40 Heat of formation + Delta-G solvation = 40.869479 kcal Electronic energy + Delta-G solvation = -25068.831617 eV Core-core repulsion = 21112.906593 eV Total energy + Delta-G solvation = -3955.925024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.93618 -40.64458 -39.84150 -38.27113 -35.47513 -34.10504 -33.13715 -32.49324 -32.02028 -29.61697 -28.12488 -26.13126 -25.56608 -24.91507 -23.61775 -22.79217 -21.66865 -20.97943 -20.14604 -19.26696 -17.95607 -17.40175 -16.99990 -16.82564 -16.42960 -16.21745 -15.78627 -15.17316 -15.10466 -14.86816 -14.86059 -14.65289 -14.26803 -13.98972 -13.38285 -13.23734 -12.90201 -12.78426 -12.62190 -12.50606 -11.94880 -11.87520 -11.49311 -11.36291 -11.14193 -11.11886 -11.08826 -10.82939 -10.79616 -10.60900 -10.17779 -9.87436 -9.78420 -9.53472 -9.14518 -9.02649 -8.31401 -6.57780 -6.28381 -3.99562 0.26663 1.71714 1.80376 2.27654 2.44416 2.89992 2.93564 3.16513 3.22511 3.26624 3.57983 3.68788 3.96827 4.02438 4.13699 4.15686 4.25353 4.38278 4.51547 4.56078 4.68384 5.01866 5.05999 5.07118 5.14778 5.31901 5.33746 5.38835 5.46258 5.50268 5.63271 5.65024 5.74287 5.78152 5.88875 5.93977 6.03340 6.54992 6.61085 7.31935 7.53041 7.56417 7.66456 8.28578 8.48214 9.17174 10.79058 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.001747 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.022455 B =16027.066191 C =17273.508044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.722 5.722 14 C 0.124 3.876 15 H 0.105 0.895 16 C -0.134 4.134 17 C -0.129 4.129 18 H 0.097 0.903 19 C 0.130 3.870 20 N -0.722 5.722 21 C 0.595 3.405 22 O -0.512 6.512 23 C -0.070 4.070 24 C 0.035 3.965 25 N -0.269 5.269 26 N -0.042 5.042 27 N -0.374 5.374 28 H 0.451 0.549 29 C -0.149 4.149 30 H 0.268 0.732 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.398 0.602 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.397 0.603 39 H 0.206 0.794 40 H 0.092 0.908 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.344 -22.614 4.450 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.321 3.679 12 O -0.387 6.387 13 N -0.376 5.376 14 C 0.018 3.982 15 H 0.123 0.877 16 C -0.173 4.173 17 C -0.147 4.147 18 H 0.115 0.885 19 C 0.007 3.993 20 N -0.373 5.373 21 C 0.379 3.621 22 O -0.385 6.385 23 C -0.204 4.204 24 C -0.124 4.124 25 N -0.134 5.134 26 N -0.024 5.024 27 N -0.101 5.101 28 H 0.298 0.702 29 C -0.188 4.188 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.232 0.768 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.231 0.769 39 H 0.222 0.778 40 H 0.111 0.889 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.656 -23.367 5.333 26.652 hybrid contribution 1.957 2.191 -0.846 3.057 sum 13.613 -21.176 4.487 25.571 Atomic orbital electron populations 1.70022 1.05956 1.27431 1.46786 1.25001 0.95038 0.99073 0.94482 0.86113 0.79548 0.81842 0.77959 1.19630 1.20517 1.20539 1.22897 0.94922 0.91603 1.59042 0.90869 1.85427 1.04775 0.96375 1.96723 1.23536 1.06690 0.95304 1.04924 1.20355 0.86550 0.86259 0.74780 1.90709 1.15374 1.85496 1.47130 1.45713 1.09698 1.04622 1.77574 1.21724 0.99231 0.81181 0.96079 0.87656 1.23297 0.98828 0.99829 0.95362 1.22909 0.98241 0.95289 0.98294 0.88498 1.21541 0.98072 0.96916 0.82733 1.45906 1.61572 1.08263 1.21605 1.16739 0.78289 0.84370 0.82744 1.90897 1.54963 1.32486 1.60136 1.22391 1.11868 0.88995 0.97138 1.23975 0.97380 1.00458 0.90592 1.75048 1.18394 1.01148 1.18795 1.78280 1.11736 1.06690 1.05726 1.45635 1.40094 1.11214 1.13188 0.70177 1.23598 0.95881 1.00618 0.98700 0.92173 0.89258 0.89162 0.76848 0.90294 0.88317 0.90361 0.90563 0.76916 0.77761 0.88942 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.59 13.22 55.49 0.73 -24.85 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.87 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.83 9.50 30.94 0.29 -14.53 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.88 6.16 36.01 0.22 -2.65 16 11 C 0.53 9.01 7.85 -10.98 -0.09 8.93 16 12 O -0.51 -10.90 15.46 5.56 0.09 -10.81 16 13 N -0.72 -7.93 5.27 -52.92 -0.28 -8.21 16 14 C 0.12 1.13 4.33 -67.02 -0.29 0.84 16 15 H 0.11 1.22 7.47 -51.93 -0.39 0.83 16 16 C -0.13 -0.75 7.38 -25.92 -0.19 -0.94 16 17 C -0.13 -0.57 3.63 -89.81 -0.33 -0.90 16 18 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 19 C 0.13 0.61 5.51 -4.04 -0.02 0.59 16 20 N -0.72 -3.05 5.55 -61.45 -0.34 -3.39 16 21 C 0.60 4.05 7.81 -12.60 -0.10 3.95 16 22 O -0.51 -5.27 16.92 5.26 0.09 -5.18 16 23 C -0.07 -0.43 7.17 -82.33 -0.59 -1.02 16 24 C 0.04 0.26 11.87 -17.35 -0.21 0.05 16 25 N -0.27 -2.48 12.35 30.48 0.38 -2.10 16 26 N -0.04 -0.34 13.35 60.35 0.81 0.46 16 27 N -0.37 -1.80 6.97 33.31 0.23 -1.57 16 28 H 0.45 0.42 8.32 -190.33 -1.58 -1.16 16 29 C -0.15 -1.02 7.44 -25.82 -0.19 -1.21 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 32 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 33 H 0.40 3.17 8.70 -40.82 -0.36 2.81 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.47 8.10 -51.93 -0.42 0.05 16 36 H 0.08 0.43 7.85 -51.93 -0.41 0.03 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.40 0.66 7.74 -40.82 -0.32 0.34 16 39 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.09 0.59 7.90 -51.93 -0.41 0.18 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -37.79 373.78 -7.87 -45.66 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -6.38 Total: -2.78 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -1.58 Total: -4.94 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 1.53 Total: -39.66 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.18 Total: -15.99 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.79 -7.87 -45.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487398600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.526 kcal (2) G-P(sol) polarization free energy of solvation -37.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds