Wall clock time and date at job start Tue Mar 31 2020 22:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99437 * 2 1 4 4 H 1.48504 * 109.46626 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47188 * 299.99394 * 3 2 1 6 6 H 1.48502 * 109.47336 * 59.99945 * 3 2 1 7 7 C 1.38800 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99201 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00163 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99957 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46911 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99948 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99369 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99390 * 180.02562 * 13 11 10 15 15 H 1.09000 * 112.91246 * 23.74616 * 14 13 11 16 16 C 1.53786 * 113.61518 * 154.99856 * 14 13 11 17 17 C 1.53781 * 87.17350 * 89.15486 * 16 14 13 18 18 H 1.08997 * 113.61223 * 270.84552 * 17 16 14 19 19 C 1.52998 * 113.61406 * 140.02181 * 17 16 14 20 20 N 1.46499 * 109.46882 * 174.99788 * 19 17 16 21 21 C 1.34783 * 119.99918 * 180.02562 * 20 19 17 22 22 O 1.21616 * 119.99744 * 0.02562 * 21 20 19 23 23 C 1.47229 * 119.99942 * 180.02562 * 21 20 19 24 24 C 1.37015 * 127.18617 * 180.02562 * 23 21 20 25 25 N 1.33320 * 106.36942 * 179.97438 * 24 23 21 26 26 N 1.28510 * 109.43993 * 359.97438 * 25 24 23 27 27 N 1.28713 * 110.63966 * 359.75379 * 26 25 24 28 28 H 0.97000 * 126.03879 * 180.25987 * 27 26 25 29 29 C 1.53782 * 87.08260 * 25.39213 * 17 16 14 30 30 H 0.96996 * 120.00220 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46960 * 60.00095 * 10 9 7 32 32 H 1.09002 * 109.47109 * 300.00232 * 10 9 7 33 33 H 0.97001 * 120.00492 * 359.97438 * 13 11 10 34 34 H 1.09002 * 113.61357 * 334.56403 * 16 14 13 35 35 H 1.09002 * 113.61608 * 203.74565 * 16 14 13 36 36 H 1.08995 * 109.47742 * 295.00269 * 19 17 16 37 37 H 1.09003 * 109.47049 * 55.00287 * 19 17 16 38 38 H 0.96999 * 120.00576 * 0.02562 * 20 19 17 39 39 H 1.07999 * 126.81271 * 359.92650 * 24 23 21 40 40 H 1.08997 * 113.61668 * 89.11298 * 29 17 16 41 41 H 1.08998 * 113.61674 * 219.93807 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5022 0.0011 13 7 2.8444 -6.3430 0.0018 14 6 2.3307 -7.7149 0.0019 15 1 1.3214 -7.7902 -0.4029 16 6 3.3109 -8.7398 -0.5930 17 6 3.8847 -8.9001 0.8247 18 1 4.6925 -8.2038 1.0500 19 6 4.2283 -10.3463 1.1870 20 7 4.8746 -10.3801 2.5013 21 6 5.2684 -11.5563 3.0286 22 8 5.0876 -12.5895 2.4131 23 6 5.9173 -11.5903 4.3497 24 6 6.3732 -12.6948 5.0202 25 7 6.8836 -12.2524 6.1697 26 7 6.7637 -10.9742 6.2270 27 7 6.1975 -10.5234 5.1627 28 1 6.0014 -9.5930 4.9710 29 6 2.5129 -8.4416 1.3469 30 1 -0.4850 0.8400 -0.0004 31 1 3.1246 -3.7312 0.8906 32 1 3.1246 -3.7312 -0.8894 33 1 3.8012 -6.1834 0.0015 34 1 4.0161 -8.3083 -1.3033 35 1 2.8256 -9.6393 -0.9718 36 1 3.3151 -10.9405 1.2157 37 1 4.9058 -10.7572 0.4384 38 1 5.0191 -9.5560 2.9921 39 1 6.3275 -13.7203 4.6845 40 1 1.8081 -9.2590 1.4990 41 1 2.5737 -7.7704 2.2036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001487398600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:40 Heat of formation + Delta-G solvation = 9.724853 kcal Electronic energy + Delta-G solvation = -25070.182149 eV Core-core repulsion = 21112.906593 eV Total energy + Delta-G solvation = -3957.275557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.46170 -41.36541 -40.59469 -39.29345 -36.07176 -34.72304 -34.58519 -34.10188 -32.57883 -30.85536 -28.86403 -27.65782 -26.65553 -25.48316 -24.19250 -23.36586 -22.25158 -22.02831 -20.75867 -19.91454 -19.80899 -18.09713 -17.69033 -17.51594 -17.27601 -17.09017 -16.88130 -16.47909 -16.32058 -15.98818 -15.57019 -15.42515 -15.26892 -14.81937 -14.66633 -14.46526 -13.88644 -13.65303 -13.35714 -13.33206 -13.15980 -12.94051 -12.87151 -12.60414 -12.43327 -11.98422 -11.88661 -11.77246 -11.70563 -11.36090 -11.20708 -11.16270 -10.94484 -10.73240 -10.26423 -10.23133 -10.02094 -8.66618 -8.35199 -6.12922 -0.24195 1.14862 1.27392 1.39023 1.41163 1.47725 1.58000 1.60863 1.85559 1.92432 2.24881 2.29390 2.99317 3.23604 3.32114 3.49342 3.49750 3.67466 3.78111 3.88352 3.89753 4.00492 4.05720 4.28712 4.32192 4.51725 4.58637 4.68884 4.83094 4.87195 4.90096 4.92115 5.02194 5.11856 5.20537 5.30627 5.42137 5.62209 5.66724 6.19734 6.22470 6.53627 6.86798 7.06619 7.12342 7.28043 8.74110 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.001747 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.022455 B =16027.066191 C =17273.508044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.567 6.567 13 N -0.693 5.693 14 C 0.102 3.898 15 H 0.075 0.925 16 C -0.120 4.120 17 C -0.106 4.106 18 H 0.118 0.882 19 C 0.132 3.868 20 N -0.706 5.706 21 C 0.600 3.400 22 O -0.549 6.549 23 C -0.063 4.063 24 C 0.026 3.974 25 N -0.299 5.299 26 N -0.061 5.061 27 N -0.349 5.349 28 H 0.468 0.532 29 C -0.145 4.145 30 H 0.271 0.729 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.417 0.583 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.412 0.588 39 H 0.218 0.782 40 H 0.095 0.905 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.116 -22.617 4.272 28.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.445 6.445 13 N -0.347 5.347 14 C -0.003 4.003 15 H 0.093 0.907 16 C -0.159 4.159 17 C -0.124 4.124 18 H 0.136 0.864 19 C 0.009 3.991 20 N -0.358 5.358 21 C 0.384 3.616 22 O -0.425 6.425 23 C -0.199 4.199 24 C -0.135 4.135 25 N -0.163 5.163 26 N -0.043 5.043 27 N -0.080 5.080 28 H 0.319 0.681 29 C -0.184 4.184 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.255 0.745 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.249 0.751 39 H 0.235 0.765 40 H 0.114 0.886 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.493 -23.356 5.172 27.969 hybrid contribution 1.096 2.083 -0.825 2.494 sum 15.589 -21.273 4.347 26.729 Atomic orbital electron populations 1.70188 1.07981 1.28520 1.48122 1.26125 0.95947 1.03334 0.93818 0.84916 0.78689 0.76410 0.78000 1.17889 1.20075 1.20053 1.23238 0.95370 0.91974 1.58642 0.89787 1.85623 1.10731 0.99342 1.97049 1.23376 1.03460 0.94343 1.06889 1.20066 0.86256 0.86695 0.74799 1.90700 1.17630 1.86040 1.50092 1.45384 1.09984 1.04211 1.75081 1.21985 0.98983 0.80628 0.98723 0.90677 1.23258 0.97745 0.98682 0.96191 1.22783 0.97328 0.95468 0.96853 0.86439 1.21509 0.97943 0.96816 0.82825 1.45784 1.60344 1.08217 1.21462 1.16708 0.77961 0.84414 0.82519 1.90888 1.56637 1.33894 1.61051 1.22277 1.11553 0.89059 0.96964 1.24307 0.97277 1.01577 0.90294 1.75024 1.19629 1.01723 1.19946 1.78216 1.12734 1.06611 1.06780 1.45588 1.38493 1.11907 1.12001 0.68123 1.23572 0.97663 1.00207 0.96968 0.92038 0.87011 0.87181 0.74522 0.89137 0.87217 0.90970 0.90214 0.75148 0.76530 0.88607 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.98 13.22 21.65 0.29 -54.70 16 2 C 0.01 0.69 5.49 84.86 0.47 1.16 16 3 Si 1.00 42.40 29.55 68.60 2.03 44.43 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 6 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.54 -30.08 9.50 67.95 0.65 -29.43 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 9 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 10 C -0.13 -4.68 6.16 71.24 0.44 -4.24 16 11 C 0.54 17.70 7.85 87.66 0.69 18.39 16 12 O -0.57 -24.69 15.46 -3.02 -0.05 -24.74 16 13 N -0.69 -13.66 5.27 -439.74 -2.32 -15.97 16 14 C 0.10 1.69 4.33 45.58 0.20 1.89 16 15 H 0.07 1.75 7.47 -2.39 -0.02 1.73 16 16 C -0.12 -0.95 7.38 31.12 0.23 -0.72 16 17 C -0.11 -0.54 3.63 -10.27 -0.04 -0.58 16 18 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 19 C 0.13 0.82 5.51 86.38 0.48 1.30 16 20 N -0.71 -3.80 5.55 -466.57 -2.59 -6.39 16 21 C 0.60 6.92 7.81 86.61 0.68 7.60 16 22 O -0.55 -10.54 16.92 -4.08 -0.07 -10.60 16 23 C -0.06 -0.68 7.17 40.41 0.29 -0.39 16 24 C 0.03 0.35 11.87 84.18 1.00 1.35 16 25 N -0.30 -5.35 12.35 -57.50 -0.71 -6.06 16 26 N -0.06 -0.93 13.35 37.02 0.49 -0.44 16 27 N -0.35 -2.68 6.97 -48.52 -0.34 -3.02 16 28 H 0.47 -0.39 8.32 -219.90 -1.83 -2.22 16 29 C -0.15 -1.65 7.44 31.18 0.23 -1.42 16 30 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 32 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 33 H 0.42 5.04 8.70 -92.71 -0.81 4.23 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 0.71 8.10 -2.39 -0.02 0.69 16 36 H 0.07 0.61 7.85 -2.39 -0.02 0.59 16 37 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.41 -0.20 7.74 -92.71 -0.72 -0.92 16 39 H 0.22 2.15 8.06 -2.91 -0.02 2.12 16 40 H 0.10 1.06 7.90 -2.39 -0.02 1.04 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -86.27 373.78 -1.36 -87.63 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -2.24 Total: 4.38 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.30 Total: -5.09 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -5.17 Total: -86.58 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.12 Total: -35.34 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -86.27 -1.36 -87.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487398600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.358 kcal (2) G-P(sol) polarization free energy of solvation -86.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds