Wall clock time and date at job start Tue Mar 31 2020 22:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00166 * 2 1 4 4 H 1.48495 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47290 * 300.00849 * 3 2 1 6 6 H 1.48502 * 109.46821 * 60.00296 * 3 2 1 7 7 C 1.38803 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00395 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99626 * 359.97438 * 7 2 1 10 10 C 1.81006 * 100.00011 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47252 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99997 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00120 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47474 * 180.02562 * 14 13 11 16 16 H 1.09004 * 112.90333 * 43.74644 * 15 14 13 17 17 C 1.53777 * 113.61678 * 174.99753 * 15 14 13 18 18 C 1.53782 * 87.07998 * 139.97827 * 17 15 14 19 19 H 1.09001 * 113.61479 * 219.93420 * 18 17 15 20 20 N 1.46505 * 113.61176 * 89.11624 * 18 17 15 21 21 C 1.34780 * 120.00004 * 154.99612 * 20 18 17 22 22 O 1.21620 * 119.99516 * 0.02562 * 21 20 18 23 23 C 1.47229 * 119.99934 * 179.97438 * 21 20 18 24 24 C 1.37006 * 127.18667 * 180.02562 * 23 21 20 25 25 N 1.33313 * 106.37337 * 179.97438 * 24 23 21 26 26 N 1.28518 * 109.43864 * 0.02562 * 25 24 23 27 27 N 1.28714 * 110.63588 * 359.97438 * 26 25 24 28 28 H 0.97001 * 126.02884 * 179.97438 * 27 26 25 29 29 C 1.53779 * 87.08409 * 334.56861 * 18 17 15 30 30 H 0.97003 * 120.00392 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46779 * 60.00048 * 10 9 7 32 32 H 1.08999 * 109.46770 * 300.00127 * 10 9 7 33 33 H 0.97000 * 120.00278 * 0.02562 * 13 11 10 34 34 H 1.08998 * 109.47081 * 59.99500 * 14 13 11 35 35 H 1.09003 * 109.46978 * 300.00344 * 14 13 11 36 36 H 1.08997 * 113.61375 * 25.43413 * 17 15 14 37 37 H 1.08997 * 113.69067 * 254.53608 * 17 15 14 38 38 H 0.96996 * 119.99878 * 335.00122 * 20 18 17 39 39 H 1.08004 * 126.81591 * 359.97438 * 24 23 21 40 40 H 1.08998 * 113.61807 * 139.97676 * 29 18 17 41 41 H 1.09001 * 113.61309 * 270.88556 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0003 14 6 2.3304 -7.7151 -0.0003 15 6 3.5024 -8.6986 -0.0001 16 1 4.2936 -8.4156 0.6942 17 6 3.0720 -10.1698 0.1228 18 6 4.1659 -10.4940 -0.9084 19 1 3.8670 -11.2440 -1.6408 20 7 5.4731 -10.7735 -0.3089 21 6 6.3677 -11.5361 -0.9683 22 8 6.0898 -11.9918 -2.0611 23 6 7.6816 -11.8165 -0.3661 24 6 8.6949 -12.5669 -0.9019 25 7 9.6882 -12.5465 -0.0129 26 7 9.3377 -11.8430 1.0040 27 7 8.1465 -11.3812 0.8472 28 1 7.6632 -10.8240 1.4771 29 6 4.0138 -9.0476 -1.4078 30 1 -0.4851 0.8400 0.0004 31 1 3.1244 -3.7314 0.8895 32 1 3.1244 -3.7313 -0.8905 33 1 3.8009 -6.1835 -0.0006 34 1 1.7214 -7.8750 -0.8900 35 1 1.7220 -7.8752 0.8899 36 1 2.0614 -10.3607 -0.2382 37 1 3.2584 -10.5998 1.1068 38 1 5.6948 -10.4097 0.5625 39 1 8.6901 -13.0743 -1.8553 40 1 4.9611 -8.5704 -1.6590 41 1 3.2606 -8.9317 -2.1872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487435864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:49 Heat of formation + Delta-G solvation = 41.819783 kcal Electronic energy + Delta-G solvation = -25044.065326 eV Core-core repulsion = 21088.181510 eV Total energy + Delta-G solvation = -3955.883816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.99324 -40.92909 -39.43158 -38.60886 -35.05808 -34.29821 -33.38754 -32.46906 -31.93080 -29.96623 -27.48531 -26.29551 -25.54442 -25.18850 -23.71765 -22.83843 -21.89917 -20.57460 -20.07451 -19.69641 -17.91637 -17.39492 -17.03331 -16.82329 -16.36360 -16.16938 -15.66088 -15.44558 -15.20513 -14.93145 -14.84297 -14.54318 -14.22114 -14.00248 -13.43970 -13.07379 -13.00216 -12.83704 -12.64969 -12.53090 -11.92816 -11.84340 -11.49461 -11.41643 -11.22520 -11.10478 -11.06175 -10.90165 -10.82200 -10.75829 -10.21984 -9.84997 -9.81056 -9.46329 -9.11889 -8.95942 -8.27977 -6.54597 -6.25822 -3.96627 0.20623 1.66467 1.73831 2.16678 2.37219 2.96821 3.03228 3.18390 3.24845 3.29040 3.61362 3.62761 3.84193 3.99606 4.06305 4.16388 4.24476 4.29677 4.32572 4.50489 4.80032 5.00202 5.09529 5.13646 5.15547 5.20705 5.22406 5.34751 5.37077 5.51144 5.56511 5.63330 5.75883 5.83304 5.87782 5.95601 6.07923 6.53246 6.56299 7.26802 7.55768 7.61086 7.62267 8.31278 8.54291 9.19711 10.81642 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.001680 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.892541 B =16662.723687 C =17736.784712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.517 6.517 13 N -0.739 5.739 14 C 0.131 3.869 15 C -0.125 4.125 16 H 0.094 0.906 17 C -0.134 4.134 18 C 0.117 3.883 19 H 0.112 0.888 20 N -0.707 5.707 21 C 0.600 3.400 22 O -0.507 6.507 23 C -0.070 4.070 24 C 0.037 3.963 25 N -0.268 5.268 26 N -0.041 5.041 27 N -0.374 5.374 28 H 0.451 0.549 29 C -0.145 4.145 30 H 0.268 0.732 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.397 0.603 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.396 0.604 39 H 0.206 0.794 40 H 0.074 0.926 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.188 -25.504 1.459 29.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.393 5.393 14 C 0.007 3.993 15 C -0.144 4.144 16 H 0.112 0.888 17 C -0.172 4.172 18 C 0.013 3.987 19 H 0.130 0.870 20 N -0.358 5.358 21 C 0.383 3.617 22 O -0.379 6.379 23 C -0.204 4.204 24 C -0.122 4.122 25 N -0.133 5.133 26 N -0.024 5.024 27 N -0.102 5.102 28 H 0.298 0.702 29 C -0.183 4.183 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.230 0.770 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.230 0.770 39 H 0.223 0.777 40 H 0.093 0.907 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.069 -26.227 1.460 29.339 hybrid contribution 1.331 2.074 0.254 2.477 sum 14.400 -24.152 1.714 28.172 Atomic orbital electron populations 1.70022 1.05954 1.27391 1.46861 1.24997 0.95034 0.99057 0.94510 0.86114 0.79565 0.81861 0.77937 1.19632 1.20536 1.20545 1.22904 0.94928 0.91630 1.58946 0.90884 1.85407 1.04912 0.96375 1.96716 1.23531 1.06593 0.95456 1.04860 1.20319 0.86534 0.86325 0.75130 1.90708 1.15384 1.85623 1.47444 1.45984 1.09831 1.05484 1.78043 1.21260 0.95113 0.80401 1.02534 1.22890 0.98391 0.94896 0.98177 0.88778 1.23317 0.99452 0.94863 0.99601 1.21977 0.81601 0.98305 0.96837 0.87046 1.45551 1.15951 1.52178 1.22122 1.16717 0.81495 0.78668 0.84804 1.90906 1.76935 1.50989 1.19106 1.22353 0.99367 1.08517 0.90192 1.23989 0.88078 0.98857 1.01278 1.75058 1.24843 1.14648 0.98759 1.78284 0.95406 1.09131 1.19561 1.45623 1.12906 1.36386 1.15257 0.70243 1.23547 1.02590 0.95167 0.97013 0.92200 0.89303 0.89255 0.76961 0.91263 0.91452 0.87673 0.90440 0.76962 0.77704 0.90729 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 11 C 0.53 9.31 7.85 -10.99 -0.09 9.23 16 12 O -0.52 -11.30 15.86 5.55 0.09 -11.21 16 13 N -0.74 -8.53 5.56 -60.29 -0.33 -8.87 16 14 C 0.13 1.20 5.51 -4.04 -0.02 1.18 16 15 C -0.12 -0.62 3.63 -89.81 -0.33 -0.95 16 16 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 17 C -0.13 -0.50 7.39 -25.92 -0.19 -0.69 16 18 C 0.12 0.54 4.32 -67.12 -0.29 0.25 16 19 H 0.11 0.67 7.46 -51.93 -0.39 0.28 16 20 N -0.71 -2.56 5.26 -54.15 -0.28 -2.84 16 21 C 0.60 3.74 7.81 -12.61 -0.10 3.64 16 22 O -0.51 -5.01 16.52 5.26 0.09 -4.93 16 23 C -0.07 -0.39 7.17 -82.34 -0.59 -0.98 16 24 C 0.04 0.25 11.87 -17.36 -0.21 0.05 16 25 N -0.27 -2.33 12.35 30.47 0.38 -1.95 16 26 N -0.04 -0.31 13.35 60.35 0.81 0.50 16 27 N -0.37 -1.50 6.97 33.31 0.23 -1.26 16 28 H 0.45 -0.03 8.32 -190.33 -1.58 -1.62 16 29 C -0.14 -0.78 7.43 -25.92 -0.19 -0.97 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 32 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 33 H 0.40 3.42 8.47 -40.82 -0.35 3.08 16 34 H 0.07 0.71 7.84 -51.93 -0.41 0.31 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.41 8.10 -51.93 -0.42 -0.02 16 37 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.40 0.29 7.96 -40.82 -0.33 -0.03 16 39 H 0.21 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.60 7.90 -51.93 -0.41 0.19 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -38.51 373.74 -7.87 -46.38 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -6.38 Total: -3.84 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.58 Total: -4.76 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 1.53 Total: -39.55 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.17 Total: -16.14 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.51 -7.87 -46.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487435864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.197 kcal (2) G-P(sol) polarization free energy of solvation -38.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds