Wall clock time and date at job start Tue Mar 31 2020 22:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00166 * 2 1 4 4 H 1.48495 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47290 * 300.00849 * 3 2 1 6 6 H 1.48502 * 109.46821 * 60.00296 * 3 2 1 7 7 C 1.38803 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00395 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99626 * 359.97438 * 7 2 1 10 10 C 1.81006 * 100.00011 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47252 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99997 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00120 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47474 * 180.02562 * 14 13 11 16 16 H 1.09004 * 112.90333 * 43.74644 * 15 14 13 17 17 C 1.53777 * 113.61678 * 174.99753 * 15 14 13 18 18 C 1.53782 * 87.07998 * 139.97827 * 17 15 14 19 19 H 1.09001 * 113.61479 * 219.93420 * 18 17 15 20 20 N 1.46505 * 113.61176 * 89.11624 * 18 17 15 21 21 C 1.34780 * 120.00004 * 154.99612 * 20 18 17 22 22 O 1.21620 * 119.99516 * 0.02562 * 21 20 18 23 23 C 1.47229 * 119.99934 * 179.97438 * 21 20 18 24 24 C 1.37006 * 127.18667 * 180.02562 * 23 21 20 25 25 N 1.33313 * 106.37337 * 179.97438 * 24 23 21 26 26 N 1.28518 * 109.43864 * 0.02562 * 25 24 23 27 27 N 1.28714 * 110.63588 * 359.97438 * 26 25 24 28 28 H 0.97001 * 126.02884 * 179.97438 * 27 26 25 29 29 C 1.53779 * 87.08409 * 334.56861 * 18 17 15 30 30 H 0.97003 * 120.00392 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46779 * 60.00048 * 10 9 7 32 32 H 1.08999 * 109.46770 * 300.00127 * 10 9 7 33 33 H 0.97000 * 120.00278 * 0.02562 * 13 11 10 34 34 H 1.08998 * 109.47081 * 59.99500 * 14 13 11 35 35 H 1.09003 * 109.46978 * 300.00344 * 14 13 11 36 36 H 1.08997 * 113.61375 * 25.43413 * 17 15 14 37 37 H 1.08997 * 113.69067 * 254.53608 * 17 15 14 38 38 H 0.96996 * 119.99878 * 335.00122 * 20 18 17 39 39 H 1.08004 * 126.81591 * 359.97438 * 24 23 21 40 40 H 1.08998 * 113.61807 * 139.97676 * 29 18 17 41 41 H 1.09001 * 113.61309 * 270.88556 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0003 14 6 2.3304 -7.7151 -0.0003 15 6 3.5024 -8.6986 -0.0001 16 1 4.2936 -8.4156 0.6942 17 6 3.0720 -10.1698 0.1228 18 6 4.1659 -10.4940 -0.9084 19 1 3.8670 -11.2440 -1.6408 20 7 5.4731 -10.7735 -0.3089 21 6 6.3677 -11.5361 -0.9683 22 8 6.0898 -11.9918 -2.0611 23 6 7.6816 -11.8165 -0.3661 24 6 8.6949 -12.5669 -0.9019 25 7 9.6882 -12.5465 -0.0129 26 7 9.3377 -11.8430 1.0040 27 7 8.1465 -11.3812 0.8472 28 1 7.6632 -10.8240 1.4771 29 6 4.0138 -9.0476 -1.4078 30 1 -0.4851 0.8400 0.0004 31 1 3.1244 -3.7314 0.8895 32 1 3.1244 -3.7313 -0.8905 33 1 3.8009 -6.1835 -0.0006 34 1 1.7214 -7.8750 -0.8900 35 1 1.7220 -7.8752 0.8899 36 1 2.0614 -10.3607 -0.2382 37 1 3.2584 -10.5998 1.1068 38 1 5.6948 -10.4097 0.5625 39 1 8.6901 -13.0743 -1.8553 40 1 4.9611 -8.5704 -1.6590 41 1 3.2606 -8.9317 -2.1872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001487435864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:48 Heat of formation + Delta-G solvation = 10.063876 kcal Electronic energy + Delta-G solvation = -25045.442366 eV Core-core repulsion = 21088.181510 eV Total energy + Delta-G solvation = -3957.260856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.46841 -41.43744 -40.52700 -39.37024 -35.87704 -35.00412 -34.58877 -33.99605 -32.44477 -31.28529 -28.42332 -27.60783 -26.68081 -25.75220 -24.24349 -23.41042 -22.36988 -21.79290 -20.56883 -20.25525 -19.74889 -17.96043 -17.74439 -17.49699 -17.37516 -17.07128 -16.88459 -16.67754 -16.03862 -15.96242 -15.75434 -15.40520 -15.12972 -15.03186 -14.59007 -14.49024 -13.94024 -13.54180 -13.39168 -13.35291 -13.16325 -12.94922 -12.87712 -12.61467 -12.43288 -12.02230 -11.88595 -11.76504 -11.64717 -11.44500 -11.28099 -11.16436 -10.88876 -10.72790 -10.27021 -10.23370 -10.05167 -8.66813 -8.35385 -6.13149 -0.25474 1.14233 1.27678 1.37297 1.40879 1.47718 1.58337 1.63626 1.78970 1.89063 2.25932 2.33039 2.98976 3.22781 3.31642 3.45007 3.56068 3.57955 3.79492 3.83928 3.88497 4.04327 4.04751 4.29984 4.32674 4.51624 4.58336 4.65831 4.79525 4.83562 4.87299 4.89590 5.05997 5.09088 5.13860 5.41716 5.44759 5.57001 5.63528 6.19503 6.21720 6.53783 6.86243 7.06286 7.12045 7.27938 8.73998 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.001680 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.892541 B =16662.723687 C =17736.784712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.130 4.130 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.128 3.872 15 C -0.112 4.112 16 H 0.120 0.880 17 C -0.123 4.123 18 C 0.120 3.880 19 H 0.098 0.902 20 N -0.689 5.689 21 C 0.605 3.395 22 O -0.547 6.547 23 C -0.062 4.062 24 C 0.026 3.974 25 N -0.299 5.299 26 N -0.059 5.059 27 N -0.347 5.347 28 H 0.469 0.531 29 C -0.147 4.147 30 H 0.271 0.729 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.416 0.584 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.414 0.586 39 H 0.217 0.783 40 H 0.074 0.926 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.340 -25.638 2.402 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.282 4.282 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.364 5.364 14 C 0.004 3.996 15 C -0.131 4.131 16 H 0.138 0.862 17 C -0.161 4.161 18 C 0.015 3.985 19 H 0.116 0.884 20 N -0.341 5.341 21 C 0.389 3.611 22 O -0.422 6.422 23 C -0.198 4.198 24 C -0.134 4.134 25 N -0.163 5.163 26 N -0.041 5.041 27 N -0.078 5.078 28 H 0.320 0.680 29 C -0.185 4.185 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.253 0.747 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.251 0.749 39 H 0.233 0.767 40 H 0.093 0.907 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.279 -26.370 2.462 30.576 hybrid contribution 0.661 2.001 -0.041 2.108 sum 15.940 -24.369 2.421 29.220 Atomic orbital electron populations 1.70184 1.07963 1.28537 1.48070 1.26122 0.95960 1.03317 0.93788 0.84913 0.78639 0.76393 0.78050 1.17992 1.20037 1.19939 1.23239 0.95346 0.92023 1.58725 0.89889 1.85588 1.10742 0.99312 1.97045 1.23381 1.03448 0.94595 1.06726 1.20049 0.86277 0.86760 0.75207 1.90697 1.17551 1.86149 1.50303 1.45735 1.10147 1.05207 1.75300 1.21453 0.96863 0.79543 1.01703 1.22885 0.97307 0.94318 0.98543 0.86189 1.23279 0.99033 0.93505 1.00288 1.21880 0.82102 0.97482 0.97080 0.88387 1.45384 1.15093 1.51077 1.22508 1.16709 0.81675 0.78434 0.84277 1.90898 1.77648 1.52733 1.20916 1.22183 0.98869 1.08270 0.90456 1.24297 0.88125 0.99246 1.01706 1.75037 1.26009 1.15782 0.99521 1.78216 0.96567 1.09744 1.19587 1.45567 1.11987 1.35348 1.14910 0.68017 1.23541 1.02328 0.95625 0.97026 0.92005 0.87165 0.87380 0.74734 0.92495 0.92084 0.87778 0.88433 0.74878 0.76669 0.90738 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 42.92 29.55 68.60 2.03 44.95 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.55 -30.60 9.50 67.96 0.65 -29.96 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.13 -4.88 6.16 71.24 0.44 -4.44 16 11 C 0.53 18.13 7.85 87.66 0.69 18.81 16 12 O -0.57 -25.17 15.86 -3.04 -0.05 -25.22 16 13 N -0.71 -14.67 5.56 -463.06 -2.57 -17.25 16 14 C 0.13 2.09 5.51 86.38 0.48 2.56 16 15 C -0.11 -0.74 3.63 -10.27 -0.04 -0.78 16 16 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 17 C -0.12 -0.54 7.39 31.12 0.23 -0.31 16 18 C 0.12 0.82 4.32 45.52 0.20 1.01 16 19 H 0.10 1.04 7.46 -2.39 -0.02 1.02 16 20 N -0.69 -2.93 5.26 -443.48 -2.33 -5.26 16 21 C 0.61 6.40 7.81 86.61 0.68 7.08 16 22 O -0.55 -10.33 16.52 -4.10 -0.07 -10.40 16 23 C -0.06 -0.59 7.17 40.41 0.29 -0.30 16 24 C 0.03 0.34 11.87 84.18 1.00 1.34 16 25 N -0.30 -5.00 12.35 -57.50 -0.71 -5.71 16 26 N -0.06 -0.80 13.35 37.02 0.49 -0.30 16 27 N -0.35 -1.98 6.97 -48.53 -0.34 -2.32 16 28 H 0.47 -1.59 8.32 -219.90 -1.83 -3.42 16 29 C -0.15 -1.22 7.43 31.12 0.23 -0.99 16 30 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 32 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 33 H 0.42 5.60 8.47 -92.71 -0.79 4.82 16 34 H 0.06 1.12 7.84 -2.39 -0.02 1.10 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.10 0.56 8.10 -2.39 -0.02 0.54 16 37 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.41 -1.12 7.96 -92.71 -0.74 -1.86 16 39 H 0.22 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.09 0.97 7.90 -2.39 -0.02 0.96 16 Total: -1.00 -87.38 373.74 -1.37 -88.75 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -2.24 Total: 2.16 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 5.30 Total: -4.78 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -5.17 Total: -85.91 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.12 Total: -35.62 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -87.38 -1.37 -88.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487435864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.811 kcal (2) G-P(sol) polarization free energy of solvation -87.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds