Wall clock time and date at job start Tue Mar 31 2020 23:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.00305 * 2 1 4 4 C 1.54329 * 109.88027 * 121.08942 * 2 1 3 5 5 H 1.08997 * 110.87372 * 23.17925 * 4 2 1 6 6 N 1.46499 * 110.72166 * 259.97314 * 4 2 1 7 7 C 1.34777 * 119.99665 * 160.30318 * 6 4 2 8 8 O 1.21553 * 120.00289 * 359.72074 * 7 6 4 9 9 C 1.47869 * 119.99621 * 179.72373 * 7 6 4 10 10 N 1.34556 * 126.05197 * 359.68696 * 9 7 6 11 11 C 1.30863 * 107.27101 * 179.89297 * 10 9 7 12 12 N 1.34588 * 107.62710 * 0.36395 * 11 10 9 13 13 H 0.96995 * 125.75246 * 179.72467 * 12 11 10 14 14 N 1.28857 * 108.50085 * 359.76875 * 12 11 10 15 15 C 1.55159 * 102.93889 * 141.60963 * 4 2 1 16 16 C 1.54914 * 101.58392 * 324.49797 * 15 4 2 17 17 N 1.47019 * 109.88355 * 238.89866 * 2 1 3 18 18 C 1.34778 * 125.64935 * 61.67945 * 17 2 1 19 19 O 1.21285 * 119.99663 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00217 * 179.97438 * 18 17 2 21 21 S 1.81002 * 109.47121 * 179.97438 * 20 18 17 22 22 C 1.76194 * 99.99783 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00382 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00084 * 179.97438 * 22 21 20 25 25 N 1.31632 * 119.99743 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00342 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47104 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47439 * 120.00019 * 26 24 22 29 29 H 1.48507 * 109.47101 * 240.00083 * 26 24 22 30 30 H 1.09007 * 109.47099 * 298.91215 * 1 2 3 31 31 H 1.09004 * 109.47067 * 58.90520 * 1 2 3 32 32 H 1.09001 * 109.47410 * 178.91116 * 1 2 3 33 33 H 0.97001 * 119.99790 * 340.02030 * 6 4 2 34 34 H 1.07997 * 126.19213 * 180.12943 * 11 10 9 35 35 H 1.08997 * 111.00776 * 82.57566 * 15 4 2 36 36 H 1.09003 * 111.00472 * 206.42751 * 15 4 2 37 37 H 1.09001 * 110.36175 * 155.84756 * 16 15 4 38 38 H 1.08995 * 110.36501 * 278.17416 * 16 15 4 39 39 H 1.09002 * 109.46795 * 299.99840 * 20 18 17 40 40 H 1.08998 * 109.47369 * 59.99449 * 20 18 17 41 41 H 0.97001 * 120.00205 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7494 1.2429 5 1 1.3064 -1.4457 1.6213 6 7 2.4554 0.1962 2.2876 7 6 2.5612 -0.2171 3.5660 8 8 2.3193 -1.3732 3.8530 9 6 2.9715 0.7359 4.6195 10 7 3.2725 2.0349 4.4387 11 6 3.5826 2.5286 5.6103 12 7 3.4809 1.5341 6.5115 13 1 3.6563 1.6109 7.4624 14 7 3.1122 0.4626 5.8981 15 6 3.2875 -1.5142 0.6926 16 6 2.8144 -1.8795 -0.7366 17 7 2.0300 -0.7142 -1.1838 18 6 1.8086 -0.3615 -2.4657 19 8 1.1451 0.6220 -2.7180 20 6 2.3852 -1.1890 -3.5853 21 16 1.9147 -0.4641 -5.1756 22 6 2.6996 -1.5975 -6.2727 23 1 3.2602 -2.4316 -5.8772 24 6 2.5966 -1.4191 -7.6454 25 7 1.9129 -0.4027 -8.1274 26 14 3.4281 -2.6211 -8.8086 27 1 4.1288 -3.6673 -8.0214 28 1 2.4055 -3.2567 -9.6778 29 1 4.4116 -1.8945 -9.6512 30 1 -0.3634 0.4969 0.8996 31 1 -0.3633 0.5308 -0.8800 32 1 -0.3634 -1.0275 -0.0195 33 1 2.6484 1.1188 2.0585 34 1 3.8718 3.5485 5.8163 35 1 4.1654 -0.8689 0.6605 36 1 3.4851 -2.4110 1.2798 37 1 3.6716 -2.0340 -1.3920 38 1 2.1885 -2.7715 -0.7126 39 1 3.4719 -1.2072 -3.5011 40 1 1.9989 -2.2063 -3.5215 41 1 1.8406 -0.2782 -9.0867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488119013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:21 Heat of formation + Delta-G solvation = 25.758699 kcal Electronic energy + Delta-G solvation = -26076.011691 eV Core-core repulsion = 22119.431414 eV Total energy + Delta-G solvation = -3956.580277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.99116 -40.54616 -39.31945 -37.31157 -34.64983 -33.89311 -32.41886 -31.97540 -31.70484 -30.89072 -28.56425 -26.34609 -25.47651 -24.42741 -23.44731 -22.87385 -21.35266 -20.88479 -19.61166 -18.90087 -17.70239 -17.48588 -17.11894 -16.85532 -16.30469 -15.92343 -15.33924 -14.99247 -14.84616 -14.79274 -14.35589 -13.98356 -13.92197 -13.78478 -12.96441 -12.84365 -12.72359 -12.55328 -12.49764 -12.15545 -11.78672 -11.65182 -11.41120 -11.26381 -11.08062 -11.06253 -11.00333 -10.92758 -10.74755 -10.62857 -10.29020 -9.79592 -9.46004 -9.32442 -9.06365 -8.54217 -8.21836 -6.48990 -6.20855 -3.91173 0.88413 1.56673 1.94719 2.56230 2.93592 2.97861 3.07047 3.22536 3.27314 3.32257 3.56496 3.65194 4.10131 4.16292 4.21602 4.30365 4.36741 4.80971 4.98652 5.00684 5.08770 5.14478 5.25968 5.39215 5.47354 5.53930 5.57057 5.65344 5.67073 5.75240 5.80820 5.87651 5.94561 6.10299 6.15457 6.16720 6.26035 6.49083 6.99865 7.44292 7.60964 7.65873 7.77258 8.36541 8.56152 9.24696 10.86617 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029674 B = 0.001954 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.363217 B =14323.042074 C =14534.040259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.081 0.919 4 C 0.139 3.861 5 H 0.110 0.890 6 N -0.698 5.698 7 C 0.619 3.381 8 O -0.514 6.514 9 C 0.146 3.854 10 N -0.484 5.484 11 C 0.201 3.799 12 N -0.400 5.400 13 H 0.454 0.546 14 N -0.247 5.247 15 C -0.145 4.145 16 C 0.102 3.898 17 N -0.621 5.621 18 C 0.551 3.449 19 O -0.512 6.512 20 C -0.147 4.147 21 S -0.060 6.060 22 C -0.534 4.534 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.413 0.587 34 H 0.232 0.768 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.547 3.988 30.750 31.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.099 0.901 4 C 0.034 3.966 5 H 0.128 0.872 6 N -0.351 5.351 7 C 0.401 3.599 8 O -0.385 6.385 9 C -0.134 4.134 10 N -0.210 5.210 11 C -0.096 4.096 12 N -0.123 5.123 13 H 0.301 0.699 14 N -0.087 5.087 15 C -0.184 4.184 16 C -0.022 4.022 17 N -0.360 5.360 18 C 0.340 3.660 19 O -0.386 6.386 20 C -0.298 4.298 21 S 0.166 5.834 22 C -0.682 4.682 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.250 0.750 34 H 0.248 0.752 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.135 4.222 30.097 30.553 hybrid contribution 1.717 -1.035 0.263 2.022 sum 4.852 3.188 30.360 30.910 Atomic orbital electron populations 1.22155 0.93909 1.02785 1.03271 1.21532 0.95231 0.96332 0.83876 0.90137 1.22143 0.97363 0.90880 0.86208 0.87173 1.45600 1.68922 1.14721 1.05858 1.16191 0.77550 0.85255 0.80933 1.90856 1.48824 1.17209 1.81656 1.23778 1.06869 0.91467 0.91296 1.71319 1.17876 1.07313 1.24502 1.26654 1.00822 0.97827 0.84339 1.45291 1.47814 1.06282 1.12963 0.69935 1.74384 1.16098 1.10552 1.07635 1.23243 0.97981 1.01658 0.95528 1.22302 0.95923 0.89180 0.94776 1.48520 1.54100 1.28772 1.04571 1.20017 0.79744 0.85027 0.81205 1.90700 1.38508 1.26873 1.82472 1.23516 1.03686 1.02691 0.99859 1.85390 1.69610 1.37769 0.90586 1.22904 1.38144 1.14106 0.93087 0.90861 1.24995 0.95260 0.95992 0.97368 1.70029 1.38568 1.28136 1.13547 0.86116 0.79015 0.80259 0.80103 1.19602 1.20571 1.20589 0.91865 0.90303 0.92170 0.75046 0.75199 0.89949 0.89053 0.89765 0.90880 0.89265 0.89211 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.10 37.16 0.34 -1.64 16 2 C 0.13 1.60 3.21 -66.95 -0.21 1.39 16 3 H 0.08 0.97 7.68 -51.93 -0.40 0.57 16 4 C 0.14 1.39 2.76 -66.09 -0.18 1.21 16 5 H 0.11 1.16 7.41 -51.93 -0.38 0.77 16 6 N -0.70 -6.61 5.20 -52.96 -0.28 -6.89 16 7 C 0.62 7.06 7.83 -12.32 -0.10 6.96 16 8 O -0.51 -7.35 16.81 5.32 0.09 -7.26 16 9 C 0.15 1.49 7.96 -156.35 -1.24 0.24 16 10 N -0.48 -3.87 11.09 -12.36 -0.14 -4.01 16 11 C 0.20 0.75 13.14 -90.48 -1.19 -0.44 16 12 N -0.40 -1.60 6.93 29.56 0.20 -1.39 16 13 H 0.45 -0.19 8.96 -190.21 -1.70 -1.90 16 14 N -0.25 -2.27 12.30 32.08 0.39 -1.88 16 15 C -0.14 -1.36 6.76 -24.58 -0.17 -1.52 16 16 C 0.10 1.10 6.69 -2.53 -0.02 1.08 16 17 N -0.62 -8.77 3.06 -163.02 -0.50 -9.27 16 18 C 0.55 10.42 7.66 -10.99 -0.08 10.34 16 19 O -0.51 -11.50 14.91 5.55 0.08 -11.41 16 20 C -0.15 -2.99 5.16 36.00 0.19 -2.80 16 21 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 22 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16 23 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 24 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 25 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 26 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.08 1.18 6.91 -51.93 -0.36 0.82 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.41 3.46 8.02 -40.82 -0.33 3.13 16 34 H 0.23 -0.35 8.06 -52.49 -0.42 -0.77 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 40 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -39.37 367.58 -10.05 -49.42 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.47 Total: -1.88 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.47 Total: 1.89 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.42 Total: -48.86 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.17 Total: -18.67 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.37 -10.05 -49.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488119013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.177 kcal (2) G-P(sol) polarization free energy of solvation -39.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds