Wall clock time and date at job start Tue Mar 31 2020 23:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.00305 * 2 1 4 4 C 1.54329 * 109.88027 * 121.08942 * 2 1 3 5 5 H 1.08997 * 110.87372 * 23.17925 * 4 2 1 6 6 N 1.46499 * 110.72166 * 259.97314 * 4 2 1 7 7 C 1.34777 * 119.99665 * 160.30318 * 6 4 2 8 8 O 1.21553 * 120.00289 * 359.72074 * 7 6 4 9 9 C 1.47869 * 119.99621 * 179.72373 * 7 6 4 10 10 N 1.34556 * 126.05197 * 359.68696 * 9 7 6 11 11 C 1.30863 * 107.27101 * 179.89297 * 10 9 7 12 12 N 1.34588 * 107.62710 * 0.36395 * 11 10 9 13 13 H 0.96995 * 125.75246 * 179.72467 * 12 11 10 14 14 N 1.28857 * 108.50085 * 359.76875 * 12 11 10 15 15 C 1.55159 * 102.93889 * 141.60963 * 4 2 1 16 16 C 1.54914 * 101.58392 * 324.49797 * 15 4 2 17 17 N 1.47019 * 109.88355 * 238.89866 * 2 1 3 18 18 C 1.34778 * 125.64935 * 61.67945 * 17 2 1 19 19 O 1.21285 * 119.99663 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00217 * 179.97438 * 18 17 2 21 21 S 1.81002 * 109.47121 * 179.97438 * 20 18 17 22 22 C 1.76194 * 99.99783 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00382 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00084 * 179.97438 * 22 21 20 25 25 N 1.31632 * 119.99743 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00342 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47104 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47439 * 120.00019 * 26 24 22 29 29 H 1.48507 * 109.47101 * 240.00083 * 26 24 22 30 30 H 1.09007 * 109.47099 * 298.91215 * 1 2 3 31 31 H 1.09004 * 109.47067 * 58.90520 * 1 2 3 32 32 H 1.09001 * 109.47410 * 178.91116 * 1 2 3 33 33 H 0.97001 * 119.99790 * 340.02030 * 6 4 2 34 34 H 1.07997 * 126.19213 * 180.12943 * 11 10 9 35 35 H 1.08997 * 111.00776 * 82.57566 * 15 4 2 36 36 H 1.09003 * 111.00472 * 206.42751 * 15 4 2 37 37 H 1.09001 * 110.36175 * 155.84756 * 16 15 4 38 38 H 1.08995 * 110.36501 * 278.17416 * 16 15 4 39 39 H 1.09002 * 109.46795 * 299.99840 * 20 18 17 40 40 H 1.08998 * 109.47369 * 59.99449 * 20 18 17 41 41 H 0.97001 * 120.00205 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7494 1.2429 5 1 1.3064 -1.4457 1.6213 6 7 2.4554 0.1962 2.2876 7 6 2.5612 -0.2171 3.5660 8 8 2.3193 -1.3732 3.8530 9 6 2.9715 0.7359 4.6195 10 7 3.2725 2.0349 4.4387 11 6 3.5826 2.5286 5.6103 12 7 3.4809 1.5341 6.5115 13 1 3.6563 1.6109 7.4624 14 7 3.1122 0.4626 5.8981 15 6 3.2875 -1.5142 0.6926 16 6 2.8144 -1.8795 -0.7366 17 7 2.0300 -0.7142 -1.1838 18 6 1.8086 -0.3615 -2.4657 19 8 1.1451 0.6220 -2.7180 20 6 2.3852 -1.1890 -3.5853 21 16 1.9147 -0.4641 -5.1756 22 6 2.6996 -1.5975 -6.2727 23 1 3.2602 -2.4316 -5.8772 24 6 2.5966 -1.4191 -7.6454 25 7 1.9129 -0.4027 -8.1274 26 14 3.4281 -2.6211 -8.8086 27 1 4.1288 -3.6673 -8.0214 28 1 2.4055 -3.2567 -9.6778 29 1 4.4116 -1.8945 -9.6512 30 1 -0.3634 0.4969 0.8996 31 1 -0.3633 0.5308 -0.8800 32 1 -0.3634 -1.0275 -0.0195 33 1 2.6484 1.1188 2.0585 34 1 3.8718 3.5485 5.8163 35 1 4.1654 -0.8689 0.6605 36 1 3.4851 -2.4110 1.2798 37 1 3.6716 -2.0340 -1.3920 38 1 2.1885 -2.7715 -0.7126 39 1 3.4719 -1.2072 -3.5011 40 1 1.9989 -2.2063 -3.5215 41 1 1.8406 -0.2782 -9.0867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488119013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:20 Heat of formation + Delta-G solvation = -3.864732 kcal Electronic energy + Delta-G solvation = -26077.296259 eV Core-core repulsion = 22119.431414 eV Total energy + Delta-G solvation = -3957.864845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.46521 -41.58439 -40.40670 -38.55515 -35.55205 -34.57611 -34.48314 -32.84107 -32.46590 -31.94290 -30.00224 -27.65548 -27.20520 -25.21030 -23.98486 -23.84003 -22.23141 -21.68126 -20.48115 -19.92271 -19.42642 -18.28898 -18.18274 -17.52855 -17.36206 -16.93534 -16.86974 -16.44613 -16.02836 -15.78917 -15.60035 -15.22012 -15.11093 -14.75209 -14.49622 -14.06850 -13.97676 -13.65232 -13.25216 -13.19665 -13.14057 -13.01026 -12.90328 -12.67614 -12.56026 -12.31169 -11.86649 -11.76324 -11.69919 -11.60262 -11.51061 -11.14844 -10.90125 -10.82621 -10.27427 -10.22668 -9.74576 -8.65695 -8.33889 -6.11635 0.26574 1.13355 1.19574 1.38627 1.42151 1.50590 1.58666 1.59510 2.01081 2.20262 2.26735 2.29374 3.00370 3.05876 3.16426 3.33776 3.49713 3.59034 3.86896 3.90529 4.04308 4.12798 4.18418 4.27985 4.28463 4.47698 4.56254 4.66290 4.73388 4.87601 4.89631 4.96237 5.03551 5.19879 5.23677 5.28624 5.40539 5.43427 5.92221 6.21122 6.25829 6.37273 6.87144 7.05769 7.07631 7.12695 8.75551 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029674 B = 0.001954 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.363217 B =14323.042074 C =14534.040259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 H 0.080 0.920 4 C 0.149 3.851 5 H 0.110 0.890 6 N -0.687 5.687 7 C 0.619 3.381 8 O -0.551 6.551 9 C 0.121 3.879 10 N -0.512 5.512 11 C 0.223 3.777 12 N -0.383 5.383 13 H 0.472 0.528 14 N -0.277 5.277 15 C -0.134 4.134 16 C 0.094 3.906 17 N -0.612 5.612 18 C 0.551 3.449 19 O -0.557 6.557 20 C -0.121 4.121 21 S -0.148 6.148 22 C -0.545 4.545 23 H 0.083 0.917 24 C 0.013 3.987 25 N -0.911 5.911 26 Si 0.999 3.001 27 H -0.256 1.256 28 H -0.274 1.274 29 H -0.274 1.274 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.419 0.581 34 H 0.284 0.716 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 3.329 32.772 33.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.030 3.970 3 H 0.098 0.902 4 C 0.044 3.956 5 H 0.128 0.872 6 N -0.340 5.340 7 C 0.402 3.598 8 O -0.425 6.425 9 C -0.159 4.159 10 N -0.239 5.239 11 C -0.074 4.074 12 N -0.109 5.109 13 H 0.323 0.677 14 N -0.118 5.118 15 C -0.173 4.173 16 C -0.028 4.028 17 N -0.347 5.347 18 C 0.339 3.661 19 O -0.435 6.435 20 C -0.273 4.273 21 S 0.079 5.921 22 C -0.693 4.693 23 H 0.101 0.899 24 C -0.192 4.192 25 N -0.548 5.548 26 Si 0.820 3.180 27 H -0.180 1.180 28 H -0.200 1.200 29 H -0.199 1.199 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.257 0.743 34 H 0.299 0.701 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.959 3.566 32.192 32.767 hybrid contribution 1.176 -0.743 -0.136 1.398 sum 6.135 2.823 32.056 32.760 Atomic orbital electron populations 1.22089 0.94037 1.02766 1.02712 1.21640 0.95141 0.96462 0.83748 0.90192 1.21979 0.97729 0.90592 0.85322 0.87227 1.45482 1.68256 1.14878 1.05344 1.16401 0.76854 0.85082 0.81435 1.90823 1.50678 1.18746 1.82288 1.23524 1.08770 0.92258 0.91318 1.71290 1.19303 1.06499 1.26811 1.27623 0.97843 0.99112 0.82835 1.45284 1.46407 1.05211 1.13962 0.67669 1.74278 1.16977 1.12880 1.07702 1.23195 0.97574 1.02107 0.94421 1.22612 0.96152 0.88331 0.95674 1.48394 1.53234 1.29519 1.03582 1.19705 0.79550 0.84380 0.82417 1.90687 1.40672 1.28724 1.83424 1.23323 1.04784 1.02913 0.96234 1.85560 1.70784 1.40010 0.95702 1.23232 1.38144 1.14212 0.93674 0.89912 1.26123 0.95781 0.97930 0.99327 1.70189 1.40174 1.30297 1.14096 0.84908 0.77888 0.77745 0.77425 1.18007 1.19971 1.19934 0.89839 0.93483 0.91802 0.74309 0.70094 0.89481 0.87838 0.88863 0.89246 0.87417 0.87536 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 9.10 71.98 0.65 -3.16 16 2 C 0.13 3.09 3.21 45.34 0.15 3.23 16 3 H 0.08 1.89 7.68 -2.39 -0.02 1.87 16 4 C 0.15 2.77 2.76 46.18 0.13 2.89 16 5 H 0.11 2.14 7.41 -2.39 -0.02 2.12 16 6 N -0.69 -12.33 5.20 -439.75 -2.29 -14.61 16 7 C 0.62 13.78 7.83 86.79 0.68 14.46 16 8 O -0.55 -15.64 16.81 -3.88 -0.07 -15.70 16 9 C 0.12 2.35 7.96 137.12 1.09 3.44 16 10 N -0.51 -7.26 11.09 -193.03 -2.14 -9.40 16 11 C 0.22 0.96 13.14 180.30 2.37 3.32 16 12 N -0.38 -2.14 6.93 -60.38 -0.42 -2.56 16 13 H 0.47 -1.68 8.96 -219.80 -1.97 -3.65 16 14 N -0.28 -4.78 12.30 -52.43 -0.64 -5.43 16 15 C -0.13 -2.22 6.76 31.99 0.22 -2.00 16 16 C 0.09 1.83 6.69 86.86 0.58 2.41 16 17 N -0.61 -16.66 3.06 -788.05 -2.41 -19.07 16 18 C 0.55 20.90 7.66 87.66 0.67 21.57 16 19 O -0.56 -25.91 14.91 -3.05 -0.05 -25.95 16 20 C -0.12 -4.90 5.16 71.24 0.37 -4.53 16 21 S -0.15 -8.24 20.57 -56.49 -1.16 -9.41 16 22 C -0.54 -31.17 9.50 67.96 0.65 -30.53 16 23 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 24 C 0.01 0.75 5.49 84.86 0.47 1.21 16 25 N -0.91 -56.08 13.22 21.65 0.29 -55.80 16 26 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 27 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 29 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 30 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.05 1.46 6.91 -2.39 -0.02 1.44 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.42 6.60 8.02 -92.71 -0.74 5.85 16 34 H 0.28 -2.24 8.06 -2.91 -0.02 -2.26 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.69 7.48 -2.39 -0.02 1.67 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 3.92 7.85 -2.39 -0.02 3.90 16 40 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 41 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -89.65 367.58 -0.47 -90.11 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -1.62 Total: 9.73 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 8.02 Total: 12.33 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -7.62 Total: -106.87 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -0.11 Total: -41.66 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.41 kcal Total: -89.65 -0.47 -90.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488119013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.250 kcal (2) G-P(sol) polarization free energy of solvation -89.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds