Wall clock time and date at job start Tue Mar 31 2020 23:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.87149 * 2 1 4 4 C 1.54315 * 109.88508 * 121.01541 * 2 1 3 5 5 H 1.09005 * 110.72207 * 215.59089 * 4 2 1 6 6 N 1.46497 * 110.72358 * 338.86239 * 4 2 1 7 7 C 1.34776 * 120.00425 * 199.97490 * 6 4 2 8 8 O 1.21555 * 120.00053 * 0.02562 * 7 6 4 9 9 C 1.47877 * 120.00158 * 179.97438 * 7 6 4 10 10 N 1.34547 * 126.04934 * 180.02562 * 9 7 6 11 11 C 1.30870 * 107.27033 * 180.02562 * 10 9 7 12 12 N 1.34588 * 107.62253 * 359.97438 * 11 10 9 13 13 H 0.96998 * 125.74414 * 180.02562 * 12 11 10 14 14 N 1.28854 * 108.50403 * 359.72901 * 12 11 10 15 15 C 1.55156 * 102.94436 * 97.22518 * 4 2 1 16 16 C 1.54906 * 101.61451 * 35.48113 * 15 4 2 17 17 N 1.47017 * 109.87941 * 238.82754 * 2 1 3 18 18 C 1.34776 * 125.65312 * 59.58028 * 17 2 1 19 19 O 1.21276 * 119.99876 * 359.97438 * 18 17 2 20 20 C 1.50704 * 120.00169 * 179.97438 * 18 17 2 21 21 S 1.81001 * 109.47000 * 179.97438 * 20 18 17 22 22 C 1.76196 * 99.99818 * 179.97438 * 21 20 18 23 23 H 1.08002 * 120.00081 * 0.02562 * 22 21 20 24 24 C 1.38802 * 119.99910 * 179.97438 * 22 21 20 25 25 N 1.31626 * 120.00180 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99979 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47284 * 90.00055 * 26 24 22 28 28 H 1.48500 * 109.47195 * 210.00494 * 26 24 22 29 29 H 1.48501 * 109.46859 * 330.00118 * 26 24 22 30 30 H 1.09004 * 109.47271 * 298.98374 * 1 2 3 31 31 H 1.08999 * 109.47439 * 58.98369 * 1 2 3 32 32 H 1.09000 * 109.46977 * 178.98918 * 1 2 3 33 33 H 0.97005 * 119.99905 * 19.97312 * 6 4 2 34 34 H 1.07999 * 126.18600 * 179.97438 * 11 10 9 35 35 H 1.09002 * 111.00677 * 153.57697 * 15 4 2 36 36 H 1.09002 * 111.00564 * 277.38955 * 15 4 2 37 37 H 1.09008 * 110.36753 * 81.85112 * 16 15 4 38 38 H 1.09001 * 110.37094 * 204.16995 * 16 15 4 39 39 H 1.09002 * 109.47089 * 299.99627 * 20 18 17 40 40 H 1.09000 * 109.46830 * 59.99916 * 20 18 17 41 41 H 0.96999 * 120.00314 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 1 2.9657 -0.2808 1.6186 6 7 1.0294 -0.7994 2.2886 7 6 1.3822 -1.0329 3.5682 8 8 2.5515 -1.2002 3.8554 9 6 0.3471 -1.0846 4.6230 10 7 0.5614 -1.3074 5.9325 11 6 -0.6036 -1.2756 6.5278 12 7 -1.5352 -1.0330 5.5873 13 1 -2.4897 -0.9555 5.7419 14 7 -0.9451 -0.9147 4.4480 15 6 2.3519 -2.1685 0.6954 16 6 2.8564 -1.8517 -0.7346 17 7 2.0299 -0.7156 -1.1829 18 6 1.7756 -0.3876 -2.4652 19 8 1.0791 0.5723 -2.7188 20 6 2.3567 -1.2136 -3.5838 21 16 1.8369 -0.5250 -5.1750 22 6 2.6355 -1.6502 -6.2707 23 1 3.2274 -2.4619 -5.8742 24 6 2.5030 -1.4941 -7.6436 25 7 1.7813 -0.5052 -8.1269 26 14 3.3491 -2.6875 -8.8053 27 1 2.4388 -3.8238 -9.0970 28 1 3.6901 -1.9889 -10.0706 29 1 4.5913 -3.1983 -8.1717 30 1 -0.3634 0.4980 0.8990 31 1 -0.3634 0.5295 -0.8807 32 1 -0.3633 -1.0275 -0.0181 33 1 0.0963 -0.6656 2.0595 34 1 -0.7846 -1.4183 7.5829 35 1 3.1271 -2.6600 1.2833 36 1 1.4454 -2.7729 0.6649 37 1 3.9089 -1.5690 -0.7116 38 1 2.7079 -2.7111 -1.3884 39 1 3.4447 -1.1987 -3.5191 40 1 2.0016 -2.2406 -3.4993 41 1 1.6890 -0.3958 -9.0863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488119017.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:24 Heat of formation + Delta-G solvation = 33.807170 kcal Electronic energy + Delta-G solvation = -26205.896824 eV Core-core repulsion = 22249.665555 eV Total energy + Delta-G solvation = -3956.231269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.99104 -40.67062 -39.30525 -37.37978 -34.62025 -33.92769 -32.42992 -32.26092 -31.47232 -30.80035 -28.52527 -26.36811 -25.49450 -24.83432 -23.45042 -22.99946 -21.41155 -20.33289 -19.50223 -19.03049 -18.08059 -17.66348 -16.87105 -16.70510 -16.52355 -15.68151 -15.36626 -15.15457 -14.95830 -14.80196 -14.44686 -14.16534 -13.98227 -13.44509 -13.10046 -12.79408 -12.73137 -12.61173 -12.50039 -12.21624 -11.94238 -11.72507 -11.26355 -11.20411 -11.05843 -11.03445 -11.02139 -10.99075 -10.75783 -10.57295 -10.28746 -9.81697 -9.45050 -9.36994 -9.06569 -8.56905 -8.23714 -6.50304 -6.21680 -3.92262 0.83189 1.62255 2.04074 2.42063 2.92081 2.95556 3.04804 3.22607 3.26242 3.30674 3.59347 3.76810 3.94310 4.12287 4.20785 4.35109 4.38871 4.77373 4.90391 5.02663 5.07758 5.13591 5.20685 5.34245 5.39630 5.46617 5.53541 5.61918 5.68434 5.69506 5.80076 5.85525 5.94513 6.05909 6.13184 6.14928 6.19169 6.46083 6.97255 7.44997 7.59610 7.63623 7.77308 8.35324 8.53937 9.23735 10.85717 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.001972 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.150229 B =14195.228645 C =14571.801671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.134 3.866 3 H 0.085 0.915 4 C 0.139 3.861 5 H 0.110 0.890 6 N -0.705 5.705 7 C 0.615 3.385 8 O -0.506 6.506 9 C 0.152 3.848 10 N -0.461 5.461 11 C 0.198 3.802 12 N -0.397 5.397 13 H 0.453 0.547 14 N -0.275 5.275 15 C -0.143 4.143 16 C 0.101 3.899 17 N -0.621 5.621 18 C 0.552 3.448 19 O -0.512 6.512 20 C -0.147 4.147 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.412 0.588 34 H 0.232 0.768 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.610 -3.092 29.970 30.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.029 3.971 3 H 0.103 0.897 4 C 0.034 3.966 5 H 0.128 0.872 6 N -0.361 5.361 7 C 0.397 3.603 8 O -0.376 6.376 9 C -0.129 4.129 10 N -0.185 5.185 11 C -0.100 4.100 12 N -0.120 5.120 13 H 0.300 0.700 14 N -0.117 5.117 15 C -0.183 4.183 16 C -0.022 4.022 17 N -0.360 5.360 18 C 0.340 3.660 19 O -0.386 6.386 20 C -0.298 4.298 21 S 0.167 5.833 22 C -0.683 4.683 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.197 1.197 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.252 0.748 34 H 0.248 0.752 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.637 -1.598 29.028 29.820 hybrid contribution 0.087 -1.879 -0.037 1.881 sum -6.550 -3.477 28.991 29.924 Atomic orbital electron populations 1.22187 0.94764 1.02785 1.03443 1.21517 0.95134 0.96394 0.84040 0.89699 1.22031 0.91561 0.96746 0.86246 0.87228 1.45980 1.12016 1.72352 1.05786 1.16274 0.85846 0.77388 0.80833 1.90852 1.17262 1.47946 1.81587 1.23834 0.89527 1.06696 0.92871 1.71326 1.24520 1.18480 1.04189 1.26795 0.83509 1.00732 0.98966 1.45148 1.12356 1.49958 1.04547 0.70005 1.74272 1.08652 1.20039 1.08722 1.23229 1.02900 0.96629 0.95492 1.22313 0.95299 0.89834 0.94783 1.48541 1.52156 1.30707 1.04552 1.20017 0.79997 0.84751 0.81192 1.90692 1.37350 1.28095 1.82462 1.23520 1.03871 1.02503 0.99877 1.85382 1.67069 1.40325 0.90567 1.22861 1.36493 1.15866 0.93093 0.90911 1.24990 0.95260 0.95975 0.97350 1.70014 1.37420 1.29251 1.13599 0.86170 0.79533 0.80219 0.79596 1.20287 1.20751 1.19669 0.91738 0.89586 0.92026 0.74801 0.75157 0.88994 0.90054 0.90761 0.89781 0.89187 0.89275 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 7.95 37.16 0.30 -1.64 16 2 C 0.13 1.56 3.48 -66.96 -0.23 1.33 16 3 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.14 1.38 3.10 -66.10 -0.21 1.17 16 5 H 0.11 1.12 7.70 -51.93 -0.40 0.72 16 6 N -0.71 -6.66 4.97 -52.96 -0.26 -6.92 16 7 C 0.62 7.12 7.83 -12.32 -0.10 7.02 16 8 O -0.51 -7.42 16.82 5.32 0.09 -7.33 16 9 C 0.15 1.56 7.96 -156.35 -1.24 0.32 16 10 N -0.46 -4.52 11.41 -12.36 -0.14 -4.66 16 11 C 0.20 0.84 13.14 -90.48 -1.19 -0.35 16 12 N -0.40 -1.43 6.93 29.57 0.20 -1.23 16 13 H 0.45 -0.35 8.96 -190.21 -1.70 -2.05 16 14 N -0.28 -2.11 11.98 32.08 0.38 -1.72 16 15 C -0.14 -1.33 6.76 -24.58 -0.17 -1.50 16 16 C 0.10 1.08 6.69 -2.50 -0.02 1.06 16 17 N -0.62 -8.64 3.08 -162.99 -0.50 -9.14 16 18 C 0.55 10.32 7.65 -10.98 -0.08 10.23 16 19 O -0.51 -11.37 14.77 5.56 0.08 -11.29 16 20 C -0.15 -2.97 5.16 36.01 0.19 -2.79 16 21 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 22 C -0.53 -15.18 9.50 30.94 0.29 -14.89 16 23 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 24 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 26 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.06 0.56 6.67 -51.93 -0.35 0.21 16 31 H 0.09 1.23 6.77 -51.93 -0.35 0.88 16 32 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.41 3.43 5.43 -40.82 -0.22 3.21 16 34 H 0.23 -0.25 8.06 -52.49 -0.42 -0.68 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 39 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 40 H 0.09 1.67 7.85 -51.92 -0.41 1.26 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -39.51 363.18 -10.05 -49.56 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.32 Total: -1.87 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.56 Total: 1.98 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.42 Total: -49.04 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.17 Total: -18.62 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -39.51 -10.05 -49.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488119017.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.367 kcal (2) G-P(sol) polarization free energy of solvation -39.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds