Wall clock time and date at job start Tue Mar 31 2020 23:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.87149 * 2 1 4 4 C 1.54315 * 109.88508 * 121.01541 * 2 1 3 5 5 H 1.09005 * 110.72207 * 215.59089 * 4 2 1 6 6 N 1.46497 * 110.72358 * 338.86239 * 4 2 1 7 7 C 1.34776 * 120.00425 * 199.97490 * 6 4 2 8 8 O 1.21555 * 120.00053 * 0.02562 * 7 6 4 9 9 C 1.47877 * 120.00158 * 179.97438 * 7 6 4 10 10 N 1.34547 * 126.04934 * 180.02562 * 9 7 6 11 11 C 1.30870 * 107.27033 * 180.02562 * 10 9 7 12 12 N 1.34588 * 107.62253 * 359.97438 * 11 10 9 13 13 H 0.96998 * 125.74414 * 180.02562 * 12 11 10 14 14 N 1.28854 * 108.50403 * 359.72901 * 12 11 10 15 15 C 1.55156 * 102.94436 * 97.22518 * 4 2 1 16 16 C 1.54906 * 101.61451 * 35.48113 * 15 4 2 17 17 N 1.47017 * 109.87941 * 238.82754 * 2 1 3 18 18 C 1.34776 * 125.65312 * 59.58028 * 17 2 1 19 19 O 1.21276 * 119.99876 * 359.97438 * 18 17 2 20 20 C 1.50704 * 120.00169 * 179.97438 * 18 17 2 21 21 S 1.81001 * 109.47000 * 179.97438 * 20 18 17 22 22 C 1.76196 * 99.99818 * 179.97438 * 21 20 18 23 23 H 1.08002 * 120.00081 * 0.02562 * 22 21 20 24 24 C 1.38802 * 119.99910 * 179.97438 * 22 21 20 25 25 N 1.31626 * 120.00180 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99979 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47284 * 90.00055 * 26 24 22 28 28 H 1.48500 * 109.47195 * 210.00494 * 26 24 22 29 29 H 1.48501 * 109.46859 * 330.00118 * 26 24 22 30 30 H 1.09004 * 109.47271 * 298.98374 * 1 2 3 31 31 H 1.08999 * 109.47439 * 58.98369 * 1 2 3 32 32 H 1.09000 * 109.46977 * 178.98918 * 1 2 3 33 33 H 0.97005 * 119.99905 * 19.97312 * 6 4 2 34 34 H 1.07999 * 126.18600 * 179.97438 * 11 10 9 35 35 H 1.09002 * 111.00677 * 153.57697 * 15 4 2 36 36 H 1.09002 * 111.00564 * 277.38955 * 15 4 2 37 37 H 1.09008 * 110.36753 * 81.85112 * 16 15 4 38 38 H 1.09001 * 110.37094 * 204.16995 * 16 15 4 39 39 H 1.09002 * 109.47089 * 299.99627 * 20 18 17 40 40 H 1.09000 * 109.46830 * 59.99916 * 20 18 17 41 41 H 0.96999 * 120.00314 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 1 2.9657 -0.2808 1.6186 6 7 1.0294 -0.7994 2.2886 7 6 1.3822 -1.0329 3.5682 8 8 2.5515 -1.2002 3.8554 9 6 0.3471 -1.0846 4.6230 10 7 0.5614 -1.3074 5.9325 11 6 -0.6036 -1.2756 6.5278 12 7 -1.5352 -1.0330 5.5873 13 1 -2.4897 -0.9555 5.7419 14 7 -0.9451 -0.9147 4.4480 15 6 2.3519 -2.1685 0.6954 16 6 2.8564 -1.8517 -0.7346 17 7 2.0299 -0.7156 -1.1829 18 6 1.7756 -0.3876 -2.4652 19 8 1.0791 0.5723 -2.7188 20 6 2.3567 -1.2136 -3.5838 21 16 1.8369 -0.5250 -5.1750 22 6 2.6355 -1.6502 -6.2707 23 1 3.2274 -2.4619 -5.8742 24 6 2.5030 -1.4941 -7.6436 25 7 1.7813 -0.5052 -8.1269 26 14 3.3491 -2.6875 -8.8053 27 1 2.4388 -3.8238 -9.0970 28 1 3.6901 -1.9889 -10.0706 29 1 4.5913 -3.1983 -8.1717 30 1 -0.3634 0.4980 0.8990 31 1 -0.3634 0.5295 -0.8807 32 1 -0.3633 -1.0275 -0.0181 33 1 0.0963 -0.6656 2.0595 34 1 -0.7846 -1.4183 7.5829 35 1 3.1271 -2.6600 1.2833 36 1 1.4454 -2.7729 0.6649 37 1 3.9089 -1.5690 -0.7116 38 1 2.7079 -2.7111 -1.3884 39 1 3.4447 -1.1987 -3.5191 40 1 2.0016 -2.2406 -3.4993 41 1 1.6890 -0.3958 -9.0863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488119017.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:23 Heat of formation + Delta-G solvation = 4.178465 kcal Electronic energy + Delta-G solvation = -26207.181621 eV Core-core repulsion = 22249.665555 eV Total energy + Delta-G solvation = -3957.516066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.47154 -41.69022 -40.40210 -38.60663 -35.60714 -34.58041 -34.44856 -33.02363 -32.37506 -31.83569 -29.91132 -27.65626 -27.22834 -25.59506 -24.09791 -23.84803 -22.21723 -21.25077 -20.41998 -19.88763 -19.56573 -18.70331 -18.02701 -17.50757 -17.38737 -16.88033 -16.78455 -16.56704 -15.89277 -15.84526 -15.69441 -15.47578 -15.16734 -14.63021 -14.47570 -14.10707 -13.84535 -13.66778 -13.24792 -13.21967 -13.15201 -13.07601 -12.89384 -12.80823 -12.59825 -12.13075 -11.87936 -11.78384 -11.71946 -11.65022 -11.40347 -11.13739 -10.88991 -10.80006 -10.29613 -10.24844 -9.75804 -8.66315 -8.34194 -6.12112 0.22926 1.14678 1.20607 1.41132 1.42861 1.52498 1.57383 1.61614 1.93136 2.15208 2.20767 2.27939 2.99988 3.11879 3.18565 3.33650 3.49119 3.53395 3.82457 3.91531 4.04815 4.07494 4.21844 4.25209 4.28030 4.45149 4.49830 4.60290 4.71743 4.87540 4.87950 4.95228 5.02304 5.17551 5.24255 5.27098 5.40008 5.42597 5.92525 6.20357 6.22831 6.36184 6.87281 7.05878 7.07193 7.11914 8.74946 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.001972 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.150229 B =14195.228645 C =14571.801671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.131 3.869 3 H 0.079 0.921 4 C 0.148 3.852 5 H 0.109 0.891 6 N -0.693 5.693 7 C 0.616 3.384 8 O -0.545 6.545 9 C 0.121 3.879 10 N -0.513 5.513 11 C 0.220 3.780 12 N -0.378 5.378 13 H 0.473 0.527 14 N -0.278 5.278 15 C -0.132 4.132 16 C 0.094 3.906 17 N -0.611 5.611 18 C 0.551 3.449 19 O -0.557 6.557 20 C -0.122 4.122 21 S -0.147 6.147 22 C -0.546 4.546 23 H 0.083 0.917 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.998 3.002 27 H -0.268 1.268 28 H -0.278 1.278 29 H -0.258 1.258 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.418 0.582 34 H 0.283 0.717 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 -5.052 32.155 33.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.027 3.973 3 H 0.097 0.903 4 C 0.043 3.957 5 H 0.127 0.873 6 N -0.349 5.349 7 C 0.399 3.601 8 O -0.419 6.419 9 C -0.159 4.159 10 N -0.238 5.238 11 C -0.077 4.077 12 N -0.104 5.104 13 H 0.325 0.675 14 N -0.121 5.121 15 C -0.171 4.171 16 C -0.028 4.028 17 N -0.347 5.347 18 C 0.340 3.660 19 O -0.435 6.435 20 C -0.273 4.273 21 S 0.080 5.920 22 C -0.694 4.694 23 H 0.101 0.899 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.820 3.180 27 H -0.193 1.193 28 H -0.203 1.203 29 H -0.182 1.182 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.259 0.741 34 H 0.298 0.702 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.720 -3.578 31.265 32.178 hybrid contribution 0.007 -1.254 -0.490 1.347 sum -6.713 -4.832 30.775 31.867 Atomic orbital electron populations 1.22108 0.94214 1.03075 1.03124 1.21639 0.95600 0.96209 0.83861 0.90310 1.21898 0.91490 0.96966 0.85370 0.87300 1.45856 1.12134 1.71679 1.05240 1.16499 0.85747 0.76535 0.81361 1.90817 1.18877 1.49978 1.82255 1.23558 0.90011 1.09261 0.93028 1.71261 1.27564 1.20624 1.04379 1.27677 0.81911 0.97638 1.00474 1.45186 1.13419 1.48330 1.03460 0.67539 1.74178 1.07737 1.19704 1.10488 1.23181 1.03475 0.96086 0.94394 1.22619 0.95654 0.88879 0.95654 1.48414 1.51413 1.31314 1.03563 1.19696 0.79800 0.84134 0.82394 1.90680 1.39482 1.29915 1.83404 1.23327 1.04717 1.02972 0.96261 1.85549 1.68352 1.42435 0.95690 1.23197 1.36510 1.15963 0.93686 0.89923 1.26118 0.95830 0.97870 0.99305 1.70178 1.39065 1.31392 1.14093 0.84963 0.78683 0.77549 0.76850 1.19283 1.20331 1.18209 0.89213 0.92841 0.91279 0.74065 0.70167 0.87853 0.89523 0.89158 0.88889 0.87553 0.87437 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 7.95 71.98 0.57 -3.07 16 2 C 0.13 2.98 3.48 45.34 0.16 3.13 16 3 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 4 C 0.15 2.74 3.10 46.18 0.14 2.88 16 5 H 0.11 2.12 7.70 -2.38 -0.02 2.10 16 6 N -0.69 -12.32 4.97 -439.76 -2.19 -14.51 16 7 C 0.62 13.92 7.83 86.80 0.68 14.60 16 8 O -0.55 -16.00 16.82 -3.89 -0.07 -16.07 16 9 C 0.12 2.38 7.96 137.13 1.09 3.47 16 10 N -0.51 -9.35 11.41 -193.02 -2.20 -11.55 16 11 C 0.22 1.20 13.14 180.30 2.37 3.57 16 12 N -0.38 -1.64 6.93 -60.37 -0.42 -2.06 16 13 H 0.47 -2.33 8.96 -219.80 -1.97 -4.30 16 14 N -0.28 -3.74 11.98 -52.43 -0.63 -4.37 16 15 C -0.13 -2.18 6.76 31.98 0.22 -1.96 16 16 C 0.09 1.80 6.69 86.85 0.58 2.38 16 17 N -0.61 -16.46 3.08 -787.96 -2.43 -18.89 16 18 C 0.55 20.73 7.65 87.66 0.67 21.40 16 19 O -0.56 -25.64 14.77 -3.02 -0.04 -25.69 16 20 C -0.12 -4.88 5.16 71.24 0.37 -4.51 16 21 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 22 C -0.55 -31.16 9.50 67.95 0.65 -30.51 16 23 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 24 C 0.01 0.77 5.49 84.86 0.47 1.24 16 25 N -0.91 -55.97 13.22 21.65 0.29 -55.68 16 26 Si 1.00 43.62 29.55 68.60 2.03 45.64 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 29 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 30 H 0.09 1.46 6.67 -2.38 -0.02 1.44 16 31 H 0.05 1.57 6.77 -2.39 -0.02 1.55 16 32 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 33 H 0.42 6.36 5.43 -92.70 -0.50 5.85 16 34 H 0.28 -1.92 8.06 -2.91 -0.02 -1.94 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.09 1.67 7.48 -2.39 -0.02 1.65 16 39 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 40 H 0.11 3.89 7.85 -2.40 -0.02 3.87 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -90.43 363.18 -0.23 -90.66 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -1.37 Total: 9.26 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 7.96 Total: 12.62 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -7.58 Total: -107.07 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.11 Total: -41.75 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -90.43 -0.23 -90.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488119017.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.837 kcal (2) G-P(sol) polarization free energy of solvation -90.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds