Wall clock time and date at job start Tue Mar 31 2020 23:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.87393 * 2 1 4 4 C 1.54319 * 109.88089 * 238.82582 * 2 1 3 5 5 H 1.08998 * 110.71875 * 144.41399 * 4 2 1 6 6 N 1.46498 * 110.72519 * 21.13928 * 4 2 1 7 7 C 1.34769 * 120.00350 * 155.00184 * 6 4 2 8 8 O 1.21557 * 119.99856 * 359.97438 * 7 6 4 9 9 C 1.47869 * 120.00140 * 180.02562 * 7 6 4 10 10 N 1.34555 * 126.04992 * 179.97438 * 9 7 6 11 11 C 1.30868 * 107.26931 * 180.02562 * 10 9 7 12 12 N 1.34587 * 107.62726 * 359.97438 * 11 10 9 13 13 H 0.96992 * 125.74884 * 180.02562 * 12 11 10 14 14 N 1.28855 * 108.49791 * 359.73636 * 12 11 10 15 15 C 1.55165 * 102.94251 * 262.77311 * 4 2 1 16 16 C 1.55127 * 101.48205 * 324.33548 * 15 4 2 17 17 N 1.47017 * 109.88303 * 121.01388 * 2 1 3 18 18 C 1.34775 * 125.64994 * 300.44439 * 17 2 1 19 19 O 1.21276 * 119.99984 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00022 * 179.97438 * 18 17 2 21 21 S 1.81000 * 109.47429 * 179.97438 * 20 18 17 22 22 C 1.76199 * 100.00325 * 179.97438 * 21 20 18 23 23 H 1.07991 * 119.99794 * 0.02562 * 22 21 20 24 24 C 1.38798 * 119.99771 * 180.02562 * 22 21 20 25 25 N 1.31633 * 120.00311 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99962 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47399 * 119.99822 * 26 24 22 29 29 H 1.48498 * 109.47295 * 240.00429 * 26 24 22 30 30 H 1.09003 * 109.46949 * 300.43821 * 1 2 3 31 31 H 1.09004 * 109.46746 * 60.43580 * 1 2 3 32 32 H 1.08998 * 109.47388 * 180.43699 * 1 2 3 33 33 H 0.97002 * 119.99807 * 335.00013 * 6 4 2 34 34 H 1.08001 * 126.18446 * 180.02562 * 11 10 9 35 35 H 1.08997 * 111.00087 * 82.56942 * 15 4 2 36 36 H 1.08998 * 111.00245 * 206.42793 * 15 4 2 37 37 H 1.09000 * 110.49995 * 278.44879 * 16 15 4 38 38 H 1.09004 * 110.34240 * 156.05790 * 16 15 4 39 39 H 1.09001 * 109.47434 * 59.99478 * 20 18 17 40 40 H 1.08999 * 109.47072 * 299.99957 * 20 18 17 41 41 H 0.97000 * 119.99668 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7512 -1.2417 5 1 2.9656 -0.2854 -1.6178 6 7 1.0293 -0.8058 -2.2864 7 6 1.3896 -0.9416 -3.5779 8 8 2.5655 -1.0184 -3.8760 9 6 0.3545 -0.9961 -4.6325 10 7 0.5757 -1.1282 -5.9531 11 6 -0.5920 -1.1335 -6.5440 12 7 -1.5323 -1.0053 -5.5897 13 1 -2.4904 -0.9788 -5.7382 14 7 -0.9454 -0.9299 -4.4450 15 6 2.3519 -2.1705 -0.6894 16 6 2.8613 -1.8455 0.7394 17 7 2.0300 -0.7123 1.1849 18 6 1.7753 -0.3810 2.4662 19 8 1.0792 0.5798 2.7172 20 6 2.3556 -1.2044 3.5870 21 16 1.8368 -0.5109 5.1764 22 6 2.6330 -1.6348 6.2752 23 1 3.2241 -2.4481 5.8809 24 6 2.5005 -1.4749 7.6476 25 7 1.7797 -0.4839 8.1282 26 14 3.3440 -2.6668 8.8126 27 1 4.0873 -3.6844 8.0269 28 1 4.2918 -1.9233 9.6809 29 1 2.3239 -3.3402 9.6560 30 1 -0.3633 0.5206 0.8861 31 1 -0.3633 0.5071 -0.8939 32 1 -0.3634 -1.0276 0.0078 33 1 0.0909 -0.7441 -2.0486 34 1 -0.7690 -1.2250 -7.6055 35 1 1.4452 -2.7745 -0.6565 36 1 3.1271 -2.6636 -1.2759 37 1 3.9124 -1.5578 0.7137 38 1 2.7178 -2.7028 1.3970 39 1 3.4436 -1.1904 3.5227 40 1 2.0001 -2.2315 3.5050 41 1 1.3408 0.1344 7.5232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488119019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:27 Heat of formation + Delta-G solvation = 27.768173 kcal Electronic energy + Delta-G solvation = -26233.952760 eV Core-core repulsion = 22277.459621 eV Total energy + Delta-G solvation = -3956.493140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.01618 -40.72631 -39.37533 -37.46356 -34.67274 -33.95271 -32.53588 -32.30260 -31.52120 -30.87774 -28.65075 -26.40947 -24.97362 -24.76566 -23.47616 -23.07021 -21.43153 -20.42383 -19.52532 -19.10608 -18.28628 -18.02296 -16.89764 -16.84620 -16.59731 -15.80087 -15.44268 -15.30670 -14.99564 -14.52699 -14.36630 -14.22733 -13.86712 -13.52465 -13.16492 -12.87296 -12.77255 -12.63703 -12.36614 -12.31449 -12.07519 -11.90814 -11.73460 -11.29624 -11.24018 -11.06122 -11.05118 -10.90431 -10.60833 -10.31366 -10.20937 -9.59551 -9.51475 -9.45775 -9.01719 -8.65040 -8.22775 -6.68053 -6.62994 -4.00919 0.80392 1.59575 2.01302 2.37321 2.81532 2.91890 2.93901 3.32550 3.40269 3.42714 3.54422 3.73394 3.91789 4.07713 4.23742 4.29146 4.35475 4.72584 4.83940 4.92687 5.01174 5.14445 5.21706 5.29471 5.35522 5.39682 5.44692 5.50647 5.62555 5.66092 5.72491 5.76883 5.86196 5.99610 6.02160 6.10811 6.13722 6.38567 6.93400 7.42119 7.54015 7.73603 7.92844 8.42877 8.49677 9.26322 10.81093 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032962 B = 0.001973 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.265268 B =14189.438271 C =14555.062630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.133 3.867 3 H 0.085 0.915 4 C 0.139 3.861 5 H 0.113 0.887 6 N -0.705 5.705 7 C 0.616 3.384 8 O -0.506 6.506 9 C 0.151 3.849 10 N -0.461 5.461 11 C 0.198 3.802 12 N -0.397 5.397 13 H 0.453 0.547 14 N -0.275 5.275 15 C -0.143 4.143 16 C 0.100 3.900 17 N -0.621 5.621 18 C 0.550 3.450 19 O -0.513 6.513 20 C -0.125 4.125 21 S -0.116 6.116 22 C -0.607 4.607 23 H 0.067 0.933 24 C 0.035 3.965 25 N -0.885 5.885 26 Si 1.090 2.910 27 H -0.288 1.288 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.412 0.588 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 -3.656 -30.717 31.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.029 3.971 3 H 0.103 0.897 4 C 0.033 3.967 5 H 0.131 0.869 6 N -0.360 5.360 7 C 0.397 3.603 8 O -0.376 6.376 9 C -0.129 4.129 10 N -0.185 5.185 11 C -0.100 4.100 12 N -0.120 5.120 13 H 0.300 0.700 14 N -0.117 5.117 15 C -0.182 4.182 16 C -0.023 4.023 17 N -0.358 5.358 18 C 0.339 3.661 19 O -0.387 6.387 20 C -0.276 4.276 21 S 0.110 5.890 22 C -0.755 4.755 23 H 0.085 0.915 24 C -0.175 4.175 25 N -0.519 5.519 26 Si 0.916 3.084 27 H -0.214 1.214 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.252 0.748 34 H 0.249 0.751 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.150 -2.550 -28.358 29.129 hybrid contribution -0.568 -0.977 -2.330 2.590 sum -6.718 -3.528 -30.688 31.612 Atomic orbital electron populations 1.22183 0.94708 1.02693 1.03581 1.21553 0.95185 0.96429 0.83979 0.89698 1.22039 0.91722 0.96676 0.86226 0.86945 1.45928 1.11399 1.73896 1.04822 1.16272 0.85946 0.77158 0.80908 1.90854 1.16830 1.48192 1.81763 1.23816 0.89264 1.07312 0.92557 1.71329 1.24728 1.18218 1.04227 1.26798 0.83294 1.01012 0.98857 1.45146 1.12035 1.51045 1.03767 0.69993 1.74266 1.08694 1.19953 1.08773 1.23270 1.02876 0.96647 0.95436 1.22368 0.95233 0.89800 0.94918 1.48497 1.51882 1.30954 1.04517 1.19980 0.80074 0.84742 0.81309 1.90693 1.37410 1.27990 1.82572 1.23298 1.03900 1.02335 0.98029 1.84810 1.68410 1.41906 0.93879 1.23755 1.39525 1.17149 0.95038 0.91503 1.26057 0.96179 0.99323 0.95988 1.70741 1.28198 1.14035 1.38970 0.83250 0.75878 0.74491 0.74762 1.21377 1.20873 1.20895 0.89683 0.91620 0.92068 0.74838 0.75136 0.89968 0.88985 0.90655 0.89782 0.88937 0.89008 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 7.93 37.16 0.29 -1.62 16 2 C 0.13 1.54 3.48 -66.96 -0.23 1.31 16 3 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.14 1.35 3.18 -66.09 -0.21 1.14 16 5 H 0.11 1.15 7.55 -51.93 -0.39 0.75 16 6 N -0.70 -6.55 4.89 -52.96 -0.26 -6.81 16 7 C 0.62 7.05 7.83 -12.32 -0.10 6.95 16 8 O -0.51 -7.38 16.74 5.32 0.09 -7.29 16 9 C 0.15 1.54 7.96 -156.35 -1.24 0.30 16 10 N -0.46 -4.47 11.41 -12.36 -0.14 -4.62 16 11 C 0.20 0.82 13.14 -90.48 -1.19 -0.37 16 12 N -0.40 -1.40 6.93 29.56 0.21 -1.19 16 13 H 0.45 -0.39 8.96 -190.22 -1.70 -2.09 16 14 N -0.28 -2.08 11.98 32.07 0.38 -1.69 16 15 C -0.14 -1.28 6.78 -24.46 -0.17 -1.45 16 16 C 0.10 1.05 6.70 -2.41 -0.02 1.03 16 17 N -0.62 -8.54 3.08 -162.88 -0.50 -9.05 16 18 C 0.55 10.24 7.65 -10.99 -0.08 10.15 16 19 O -0.51 -11.31 14.76 5.56 0.08 -11.23 16 20 C -0.12 -2.52 5.16 36.00 0.19 -2.34 16 21 S -0.12 -3.12 19.60 -107.50 -2.11 -5.23 16 22 C -0.61 -17.45 9.50 30.94 0.29 -17.16 16 23 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 24 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 25 N -0.89 -27.52 13.67 55.49 0.76 -26.77 16 26 Si 1.09 25.06 29.92 -169.99 -5.09 19.97 16 27 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 H 0.08 1.21 6.75 -51.93 -0.35 0.86 16 31 H 0.07 0.57 6.82 -51.93 -0.35 0.22 16 32 H 0.06 0.64 8.01 -51.93 -0.42 0.22 16 33 H 0.41 3.36 5.57 -40.82 -0.23 3.14 16 34 H 0.23 -0.27 8.06 -52.49 -0.42 -0.70 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.85 7.48 -51.93 -0.39 0.47 16 39 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 40 H 0.09 1.73 7.85 -51.92 -0.41 1.32 16 41 H 0.28 8.83 7.12 -40.82 -0.29 8.54 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -40.22 361.77 -9.96 -50.18 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.27 Total: -0.61 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.56 Total: -1.12 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.45 Total: -50.12 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.17 Total: -18.52 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.09 Total: 19.97 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -40.22 -9.96 -50.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488119019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.943 kcal (2) G-P(sol) polarization free energy of solvation -40.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds