Wall clock time and date at job start Tue Mar 31 2020 23:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.87393 * 2 1 4 4 C 1.54319 * 109.88089 * 238.82582 * 2 1 3 5 5 H 1.08998 * 110.71875 * 144.41399 * 4 2 1 6 6 N 1.46498 * 110.72519 * 21.13928 * 4 2 1 7 7 C 1.34769 * 120.00350 * 155.00184 * 6 4 2 8 8 O 1.21557 * 119.99856 * 359.97438 * 7 6 4 9 9 C 1.47869 * 120.00140 * 180.02562 * 7 6 4 10 10 N 1.34555 * 126.04992 * 179.97438 * 9 7 6 11 11 C 1.30868 * 107.26931 * 180.02562 * 10 9 7 12 12 N 1.34587 * 107.62726 * 359.97438 * 11 10 9 13 13 H 0.96992 * 125.74884 * 180.02562 * 12 11 10 14 14 N 1.28855 * 108.49791 * 359.73636 * 12 11 10 15 15 C 1.55165 * 102.94251 * 262.77311 * 4 2 1 16 16 C 1.55127 * 101.48205 * 324.33548 * 15 4 2 17 17 N 1.47017 * 109.88303 * 121.01388 * 2 1 3 18 18 C 1.34775 * 125.64994 * 300.44439 * 17 2 1 19 19 O 1.21276 * 119.99984 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00022 * 179.97438 * 18 17 2 21 21 S 1.81000 * 109.47429 * 179.97438 * 20 18 17 22 22 C 1.76199 * 100.00325 * 179.97438 * 21 20 18 23 23 H 1.07991 * 119.99794 * 0.02562 * 22 21 20 24 24 C 1.38798 * 119.99771 * 180.02562 * 22 21 20 25 25 N 1.31633 * 120.00311 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99962 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47399 * 119.99822 * 26 24 22 29 29 H 1.48498 * 109.47295 * 240.00429 * 26 24 22 30 30 H 1.09003 * 109.46949 * 300.43821 * 1 2 3 31 31 H 1.09004 * 109.46746 * 60.43580 * 1 2 3 32 32 H 1.08998 * 109.47388 * 180.43699 * 1 2 3 33 33 H 0.97002 * 119.99807 * 335.00013 * 6 4 2 34 34 H 1.08001 * 126.18446 * 180.02562 * 11 10 9 35 35 H 1.08997 * 111.00087 * 82.56942 * 15 4 2 36 36 H 1.08998 * 111.00245 * 206.42793 * 15 4 2 37 37 H 1.09000 * 110.49995 * 278.44879 * 16 15 4 38 38 H 1.09004 * 110.34240 * 156.05790 * 16 15 4 39 39 H 1.09001 * 109.47434 * 59.99478 * 20 18 17 40 40 H 1.08999 * 109.47072 * 299.99957 * 20 18 17 41 41 H 0.97000 * 119.99668 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7512 -1.2417 5 1 2.9656 -0.2854 -1.6178 6 7 1.0293 -0.8058 -2.2864 7 6 1.3896 -0.9416 -3.5779 8 8 2.5655 -1.0184 -3.8760 9 6 0.3545 -0.9961 -4.6325 10 7 0.5757 -1.1282 -5.9531 11 6 -0.5920 -1.1335 -6.5440 12 7 -1.5323 -1.0053 -5.5897 13 1 -2.4904 -0.9788 -5.7382 14 7 -0.9454 -0.9299 -4.4450 15 6 2.3519 -2.1705 -0.6894 16 6 2.8613 -1.8455 0.7394 17 7 2.0300 -0.7123 1.1849 18 6 1.7753 -0.3810 2.4662 19 8 1.0792 0.5798 2.7172 20 6 2.3556 -1.2044 3.5870 21 16 1.8368 -0.5109 5.1764 22 6 2.6330 -1.6348 6.2752 23 1 3.2241 -2.4481 5.8809 24 6 2.5005 -1.4749 7.6476 25 7 1.7797 -0.4839 8.1282 26 14 3.3440 -2.6668 8.8126 27 1 4.0873 -3.6844 8.0269 28 1 4.2918 -1.9233 9.6809 29 1 2.3239 -3.3402 9.6560 30 1 -0.3633 0.5206 0.8861 31 1 -0.3633 0.5071 -0.8939 32 1 -0.3634 -1.0276 0.0078 33 1 0.0909 -0.7441 -2.0486 34 1 -0.7690 -1.2250 -7.6055 35 1 1.4452 -2.7745 -0.6565 36 1 3.1271 -2.6636 -1.2759 37 1 3.9124 -1.5578 0.7137 38 1 2.7178 -2.7028 1.3970 39 1 3.4436 -1.1904 3.5227 40 1 2.0001 -2.2315 3.5050 41 1 1.3408 0.1344 7.5232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488119019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:26 Heat of formation + Delta-G solvation = -2.458057 kcal Electronic energy + Delta-G solvation = -26235.263468 eV Core-core repulsion = 22277.459621 eV Total energy + Delta-G solvation = -3957.803847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.48851 -41.74548 -40.46212 -38.67725 -35.65137 -34.74818 -34.46541 -33.07579 -32.41128 -31.89731 -30.02494 -27.26554 -27.08224 -25.61795 -24.15957 -23.86643 -22.22546 -21.34128 -20.64573 -20.01516 -19.90201 -18.76635 -18.14109 -17.53615 -17.41144 -17.14648 -16.69134 -16.16993 -15.89217 -15.78087 -15.68649 -15.54745 -15.21244 -14.77782 -14.48664 -14.21441 -13.94347 -13.85554 -13.70467 -13.27973 -13.26605 -13.15307 -12.84028 -12.75569 -12.18006 -11.93376 -11.91034 -11.80003 -11.67457 -11.55463 -11.42463 -11.11533 -10.99808 -10.81809 -10.33400 -10.28861 -9.83041 -8.92590 -8.87019 -6.27633 0.20819 1.09595 1.13082 1.45483 1.49549 1.54263 1.62145 1.78424 1.88244 2.08955 2.18414 2.33251 3.02468 3.04344 3.13475 3.22238 3.43447 3.51231 3.71636 3.86089 4.01490 4.04128 4.12204 4.19420 4.21054 4.33590 4.43802 4.56034 4.66157 4.83165 4.86216 4.91634 4.97972 5.12367 5.22119 5.24054 5.33941 5.65422 5.90818 6.15239 6.19709 6.28324 6.84799 7.01404 7.03873 7.06312 8.51003 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032962 B = 0.001973 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.265268 B =14189.438271 C =14555.062630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.130 3.870 3 H 0.077 0.923 4 C 0.148 3.852 5 H 0.111 0.889 6 N -0.692 5.692 7 C 0.616 3.384 8 O -0.546 6.546 9 C 0.121 3.879 10 N -0.513 5.513 11 C 0.220 3.780 12 N -0.378 5.378 13 H 0.473 0.527 14 N -0.277 5.277 15 C -0.132 4.132 16 C 0.093 3.907 17 N -0.610 5.610 18 C 0.551 3.449 19 O -0.557 6.557 20 C -0.102 4.102 21 S -0.192 6.192 22 C -0.612 4.612 23 H 0.075 0.925 24 C -0.019 4.019 25 N -0.914 5.914 26 Si 1.141 2.859 27 H -0.263 1.263 28 H -0.275 1.275 29 H -0.274 1.274 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.418 0.582 34 H 0.283 0.717 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.476 -5.697 -33.106 34.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.026 3.974 3 H 0.096 0.904 4 C 0.042 3.958 5 H 0.129 0.871 6 N -0.348 5.348 7 C 0.399 3.601 8 O -0.420 6.420 9 C -0.159 4.159 10 N -0.238 5.238 11 C -0.077 4.077 12 N -0.104 5.104 13 H 0.325 0.675 14 N -0.121 5.121 15 C -0.171 4.171 16 C -0.030 4.030 17 N -0.345 5.345 18 C 0.339 3.661 19 O -0.435 6.435 20 C -0.253 4.253 21 S 0.034 5.966 22 C -0.760 4.760 23 H 0.093 0.907 24 C -0.222 4.222 25 N -0.549 5.549 26 Si 0.959 3.041 27 H -0.187 1.187 28 H -0.200 1.200 29 H -0.200 1.200 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.259 0.741 34 H 0.298 0.702 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.254 -4.608 -30.811 31.775 hybrid contribution -0.639 -0.333 -1.833 1.969 sum -6.892 -4.941 -32.644 33.727 Atomic orbital electron populations 1.22105 0.94149 1.03107 1.03139 1.21676 0.95655 0.96203 0.83838 0.90449 1.21902 0.91593 0.96991 0.85310 0.87148 1.45802 1.11542 1.73189 1.04260 1.16498 0.85839 0.76284 0.81460 1.90819 1.18464 1.50263 1.82421 1.23544 0.89735 1.09913 0.92682 1.71265 1.27776 1.20396 1.04394 1.27679 0.81716 0.97838 1.00436 1.45186 1.13127 1.49372 1.02699 0.67531 1.74173 1.07756 1.19606 1.10549 1.23230 1.03569 0.96011 0.94251 1.22687 0.95569 0.88825 0.95870 1.48379 1.51119 1.31539 1.03480 1.19635 0.79899 0.84123 0.82489 1.90683 1.39543 1.29797 1.83493 1.23172 1.04748 1.02833 0.94544 1.85035 1.69383 1.43517 0.98622 1.24076 1.39107 1.17148 0.95633 0.90688 1.27822 0.95905 1.00070 0.98442 1.70864 1.30074 1.15273 1.38705 0.82656 0.75366 0.72911 0.73154 1.18675 1.20049 1.19980 0.92982 0.89221 0.91145 0.74078 0.70158 0.89304 0.87661 0.89068 0.88882 0.87358 0.87217 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 7.93 71.98 0.57 -3.02 16 2 C 0.13 2.93 3.48 45.34 0.16 3.08 16 3 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 4 C 0.15 2.67 3.18 46.18 0.15 2.82 16 5 H 0.11 2.13 7.55 -2.39 -0.02 2.12 16 6 N -0.69 -12.04 4.89 -439.76 -2.15 -14.19 16 7 C 0.62 13.76 7.83 86.79 0.68 14.44 16 8 O -0.55 -15.92 16.74 -3.90 -0.07 -15.99 16 9 C 0.12 2.34 7.96 137.13 1.09 3.44 16 10 N -0.51 -9.25 11.41 -193.03 -2.20 -11.45 16 11 C 0.22 1.16 13.14 180.30 2.37 3.52 16 12 N -0.38 -1.56 6.93 -60.38 -0.42 -1.98 16 13 H 0.47 -2.42 8.96 -219.80 -1.97 -4.39 16 14 N -0.28 -3.66 11.98 -52.44 -0.63 -4.29 16 15 C -0.13 -2.05 6.78 32.07 0.22 -1.84 16 16 C 0.09 1.72 6.70 86.93 0.58 2.30 16 17 N -0.61 -16.16 3.08 -787.63 -2.42 -18.59 16 18 C 0.55 20.49 7.65 87.66 0.67 21.16 16 19 O -0.56 -25.41 14.76 -3.02 -0.04 -25.45 16 20 C -0.10 -4.06 5.16 71.24 0.37 -3.70 16 21 S -0.19 -10.60 19.60 -56.49 -1.11 -11.70 16 22 C -0.61 -35.30 9.50 67.95 0.65 -34.66 16 23 H 0.07 4.07 7.80 -2.92 -0.02 4.04 16 24 C -0.02 -1.12 5.49 84.86 0.47 -0.65 16 25 N -0.91 -58.11 13.67 21.65 0.30 -57.81 16 26 Si 1.14 49.53 29.92 68.60 2.05 51.58 16 27 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 28 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 29 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 30 H 0.05 1.51 6.75 -2.39 -0.02 1.50 16 31 H 0.09 1.46 6.82 -2.39 -0.02 1.44 16 32 H 0.07 1.37 8.01 -2.39 -0.02 1.35 16 33 H 0.42 6.18 5.57 -92.71 -0.52 5.67 16 34 H 0.28 -1.97 8.06 -2.91 -0.02 -1.99 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.62 7.48 -2.39 -0.02 1.60 16 39 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 40 H 0.11 3.98 7.85 -2.40 -0.02 3.96 16 41 H 0.26 17.26 7.12 -92.71 -0.66 16.60 16 Total: -1.00 -92.10 361.77 0.00 -92.10 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -1.28 Total: 10.88 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 7.96 Total: 6.89 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -7.53 Total: -108.31 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -0.11 Total: -41.44 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.05 Total: 51.58 kcal Atomic # 16 Polarization: -10.60 SS G_CDS: -1.11 Total: -11.70 kcal Total: -92.10 0.00 -92.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488119019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.643 kcal (2) G-P(sol) polarization free energy of solvation -92.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds