Wall clock time and date at job start Tue Mar 31 2020 23:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.99121 * 2 1 4 4 C 1.54332 * 109.99415 * 238.96586 * 2 1 3 5 5 H 1.09011 * 110.51320 * 336.97575 * 4 2 1 6 6 N 1.46503 * 111.00266 * 100.12183 * 4 2 1 7 7 C 1.34777 * 119.99863 * 200.23617 * 6 4 2 8 8 O 1.21282 * 120.00043 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99928 * 180.02562 * 7 6 4 10 10 S 1.81004 * 109.47037 * 179.97438 * 9 7 6 11 11 C 1.76199 * 99.99551 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00294 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99640 * 180.02562 * 11 10 9 14 14 N 1.31629 * 120.00012 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99975 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46909 * 90.00410 * 15 13 11 17 17 H 1.48501 * 109.46961 * 210.00217 * 15 13 11 18 18 H 1.48493 * 109.47188 * 330.00358 * 15 13 11 19 19 C 1.55155 * 103.02002 * 218.66395 * 4 2 1 20 20 C 1.54908 * 101.57995 * 35.30722 * 19 4 2 21 21 N 1.47018 * 109.88116 * 121.09453 * 2 1 3 22 22 C 1.34774 * 125.65146 * 298.39362 * 21 2 1 23 23 O 1.21619 * 119.99799 * 2.09578 * 22 21 2 24 24 C 1.47236 * 120.00202 * 182.08795 * 22 21 2 25 25 C 1.37006 * 127.18869 * 172.40370 * 24 22 21 26 26 N 1.33323 * 106.37010 * 179.97438 * 25 24 22 27 27 N 1.28512 * 109.44038 * 0.02562 * 26 25 24 28 28 N 1.28715 * 110.63587 * 359.97438 * 27 26 25 29 29 H 0.96999 * 126.03391 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.47289 * 300.35815 * 1 2 3 31 31 H 1.09000 * 109.47019 * 60.35876 * 1 2 3 32 32 H 1.08996 * 109.46908 * 180.35624 * 1 2 3 33 33 H 0.96997 * 120.00024 * 20.23544 * 6 4 2 34 34 H 1.08995 * 109.46781 * 299.99983 * 9 7 6 35 35 H 1.08998 * 109.47220 * 59.99800 * 9 7 6 36 36 H 0.97001 * 120.00173 * 180.02562 * 14 13 11 37 37 H 1.08990 * 111.00503 * 277.23119 * 19 4 2 38 38 H 1.09005 * 111.00050 * 153.37884 * 19 4 2 39 39 H 1.09005 * 110.36268 * 204.15006 * 20 19 4 40 40 H 1.09000 * 110.46444 * 81.87342 * 20 19 4 41 41 H 1.07999 * 126.81352 * 0.03956 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0578 -0.7477 -1.2427 5 1 1.3054 -1.4406 -1.6197 6 7 2.4632 0.1940 -2.2892 7 6 2.5609 -0.2208 -3.5679 8 8 2.3128 -1.3734 -3.8522 9 6 2.9785 0.7477 -4.6443 10 16 3.0163 -0.1042 -6.2409 11 6 3.5206 1.2232 -7.2840 12 1 3.7022 2.2013 -6.8637 13 6 3.6836 1.0119 -8.6461 14 7 4.0599 2.0037 -9.4256 15 14 3.3690 -0.6798 -9.3732 16 1 1.9446 -0.7869 -9.7792 17 1 4.2384 -0.8777 -10.5607 18 1 3.6737 -1.7195 -8.3577 19 6 3.2865 -1.5182 -0.6915 20 6 2.8100 -1.8824 0.7368 21 7 2.0300 -0.7140 1.1839 22 6 1.8074 -0.3620 2.4657 23 8 1.1099 0.6015 2.7193 24 6 2.4085 -1.1440 3.5589 25 6 2.4017 -0.8406 4.8949 26 7 3.0597 -1.8253 5.5072 27 7 3.4532 -2.6836 4.6354 28 7 3.0914 -2.3272 3.4526 29 1 3.2710 -2.8106 2.6311 30 1 -0.3634 0.5194 0.8867 31 1 -0.3633 0.5082 -0.8932 32 1 -0.3633 -1.0276 0.0064 33 1 2.6612 1.1159 -2.0619 34 1 2.2659 1.5713 -4.6883 35 1 3.9708 1.1376 -4.4173 36 1 4.1734 1.8562 -10.3776 37 1 4.1670 -0.8767 -0.6579 38 1 3.4808 -2.4154 -1.2792 39 1 3.6656 -2.0411 1.3932 40 1 2.1806 -2.7721 0.7133 41 1 1.9516 0.0240 5.3599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488143620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:50 Heat of formation + Delta-G solvation = 42.428498 kcal Electronic energy + Delta-G solvation = -26289.114068 eV Core-core repulsion = 22333.256648 eV Total energy + Delta-G solvation = -3955.857420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.94898 -41.01828 -39.47093 -37.98639 -34.89592 -33.94819 -32.51175 -32.39822 -31.82828 -31.11403 -29.21656 -26.13012 -25.65032 -25.33713 -23.61688 -23.02045 -22.01482 -20.98480 -20.60071 -18.54703 -18.04114 -17.66012 -17.30473 -16.85896 -16.36877 -16.27572 -15.69758 -15.22396 -15.03876 -14.90497 -14.76889 -14.30806 -13.98868 -13.83115 -13.63663 -13.34009 -12.92419 -12.86822 -12.73653 -12.65923 -12.33370 -12.10932 -11.84468 -11.65066 -11.39659 -11.34391 -11.26954 -11.07652 -10.77664 -10.68008 -10.11904 -9.94316 -9.74758 -9.48384 -9.26753 -9.07126 -8.60447 -7.01193 -6.35738 -4.08693 0.30262 1.73730 1.75487 2.05564 2.43558 2.64010 2.73098 3.15763 3.27079 3.43049 3.43636 3.52214 3.73698 3.82765 4.09761 4.25753 4.29942 4.39526 4.45808 4.48743 4.57542 4.62491 4.63917 4.84468 5.00831 5.03212 5.10675 5.17795 5.41597 5.44201 5.47190 5.57559 5.62868 5.66926 5.83000 5.89424 5.96352 6.25695 6.60161 7.27634 7.34488 7.70024 7.87069 8.25179 8.34778 9.09991 10.73392 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031745 B = 0.002011 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.821677 B =13922.962853 C =14276.177996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 H 0.090 0.910 4 C 0.142 3.858 5 H 0.110 0.890 6 N -0.728 5.728 7 C 0.536 3.464 8 O -0.515 6.515 9 C -0.125 4.125 10 S -0.140 6.140 11 C -0.523 4.523 12 H 0.089 0.911 13 C 0.096 3.904 14 N -0.878 5.878 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.236 1.236 19 C -0.143 4.143 20 C 0.081 3.919 21 N -0.610 5.610 22 C 0.613 3.387 23 O -0.506 6.506 24 C -0.064 4.064 25 C 0.036 3.964 26 N -0.268 5.268 27 N -0.047 5.047 28 N -0.379 5.379 29 H 0.450 0.550 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.403 0.597 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.271 0.729 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 -6.404 25.073 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.107 0.893 4 C 0.036 3.964 5 H 0.128 0.872 6 N -0.383 5.383 7 C 0.322 3.678 8 O -0.388 6.388 9 C -0.276 4.276 10 S 0.086 5.914 11 C -0.671 4.671 12 H 0.107 0.893 13 C -0.113 4.113 14 N -0.515 5.515 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.160 1.160 19 C -0.182 4.182 20 C -0.043 4.043 21 N -0.345 5.345 22 C 0.399 3.601 23 O -0.379 6.379 24 C -0.198 4.198 25 C -0.124 4.124 26 N -0.133 5.133 27 N -0.029 5.029 28 N -0.112 5.112 29 H 0.304 0.696 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.238 0.762 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.475 -8.690 25.546 27.207 hybrid contribution 0.019 1.673 -1.296 2.116 sum -3.455 -7.017 24.251 25.481 Atomic orbital electron populations 1.22169 0.93143 1.03019 1.03911 1.21792 0.95678 0.96538 0.82941 0.89253 1.21894 0.96547 0.91508 0.86472 0.87223 1.45898 1.71929 1.13705 1.06761 1.20328 0.76133 0.89006 0.82305 1.90708 1.47583 1.18936 1.81596 1.23284 1.05044 1.01366 0.97886 1.84786 1.90298 1.18485 0.97819 1.22297 1.53289 0.96847 0.94634 0.89335 1.24723 0.93292 0.97389 0.95926 1.69934 1.44663 1.31423 1.05459 0.86733 0.79431 0.85003 0.80648 1.19185 1.19902 1.15974 1.23252 0.99013 1.02810 0.93140 1.22696 0.94918 0.89528 0.97119 1.48369 1.52726 1.28550 1.04841 1.16324 0.80480 0.83539 0.79742 1.90890 1.37476 1.27087 1.82421 1.22280 1.07554 0.92138 0.97866 1.23963 0.99393 1.00166 0.88860 1.75035 1.12581 1.01286 1.24424 1.78244 1.17233 1.20600 0.86799 1.46430 1.36715 1.17078 1.11006 0.69629 0.90574 0.90658 0.92035 0.76247 0.88297 0.88313 0.91872 0.89388 0.88065 0.90950 0.89644 0.77721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.10 37.16 0.34 -0.90 16 2 C 0.13 0.95 3.23 -66.95 -0.22 0.73 16 3 H 0.09 0.63 7.70 -51.93 -0.40 0.23 16 4 C 0.14 1.13 2.76 -66.09 -0.18 0.95 16 5 H 0.11 1.02 7.39 -51.92 -0.38 0.64 16 6 N -0.73 -7.06 5.21 -52.02 -0.27 -7.33 16 7 C 0.54 7.98 7.85 -10.98 -0.09 7.89 16 8 O -0.51 -9.49 15.59 5.56 0.09 -9.40 16 9 C -0.13 -2.16 6.16 36.01 0.22 -1.94 16 10 S -0.14 -3.33 18.55 -107.50 -1.99 -5.32 16 11 C -0.52 -14.47 10.04 30.94 0.31 -14.16 16 12 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 13 C 0.10 2.71 5.50 -17.43 -0.10 2.62 16 14 N -0.88 -25.82 13.97 55.49 0.78 -25.05 16 15 Si 0.86 21.04 27.74 -169.99 -4.71 16.32 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 19 C -0.14 -0.89 6.77 -24.58 -0.17 -1.06 16 20 C 0.08 0.34 5.55 -2.53 -0.01 0.33 16 21 N -0.61 -4.01 3.06 -164.33 -0.50 -4.51 16 22 C 0.61 5.10 7.64 -12.61 -0.10 5.00 16 23 O -0.51 -5.63 15.89 5.26 0.08 -5.55 16 24 C -0.06 -0.48 6.93 -82.33 -0.57 -1.05 16 25 C 0.04 0.29 11.88 -17.35 -0.21 0.08 16 26 N -0.27 -2.61 12.35 30.47 0.38 -2.23 16 27 N -0.05 -0.41 13.35 60.35 0.81 0.40 16 28 N -0.38 -2.32 6.38 33.31 0.21 -2.11 16 29 H 0.45 1.39 5.38 -190.33 -1.02 0.37 16 30 H 0.08 0.67 6.81 -51.93 -0.35 0.32 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.40 2.95 8.33 -40.82 -0.34 2.61 16 34 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 35 H 0.10 1.58 8.14 -51.92 -0.42 1.15 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.19 5.51 -51.93 -0.29 -0.10 16 40 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.21 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -35.46 358.95 -6.24 -41.70 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.75 Total: -0.81 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.76 Total: -1.51 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 1.40 Total: -40.84 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.17 Total: -14.95 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.32 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.99 Total: -5.32 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.46 -6.24 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488143620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.131 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds