Wall clock time and date at job start Tue Mar 31 2020 23:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.99121 * 2 1 4 4 C 1.54332 * 109.99415 * 238.96586 * 2 1 3 5 5 H 1.09011 * 110.51320 * 336.97575 * 4 2 1 6 6 N 1.46503 * 111.00266 * 100.12183 * 4 2 1 7 7 C 1.34777 * 119.99863 * 200.23617 * 6 4 2 8 8 O 1.21282 * 120.00043 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99928 * 180.02562 * 7 6 4 10 10 S 1.81004 * 109.47037 * 179.97438 * 9 7 6 11 11 C 1.76199 * 99.99551 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00294 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99640 * 180.02562 * 11 10 9 14 14 N 1.31629 * 120.00012 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99975 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46909 * 90.00410 * 15 13 11 17 17 H 1.48501 * 109.46961 * 210.00217 * 15 13 11 18 18 H 1.48493 * 109.47188 * 330.00358 * 15 13 11 19 19 C 1.55155 * 103.02002 * 218.66395 * 4 2 1 20 20 C 1.54908 * 101.57995 * 35.30722 * 19 4 2 21 21 N 1.47018 * 109.88116 * 121.09453 * 2 1 3 22 22 C 1.34774 * 125.65146 * 298.39362 * 21 2 1 23 23 O 1.21619 * 119.99799 * 2.09578 * 22 21 2 24 24 C 1.47236 * 120.00202 * 182.08795 * 22 21 2 25 25 C 1.37006 * 127.18869 * 172.40370 * 24 22 21 26 26 N 1.33323 * 106.37010 * 179.97438 * 25 24 22 27 27 N 1.28512 * 109.44038 * 0.02562 * 26 25 24 28 28 N 1.28715 * 110.63587 * 359.97438 * 27 26 25 29 29 H 0.96999 * 126.03391 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.47289 * 300.35815 * 1 2 3 31 31 H 1.09000 * 109.47019 * 60.35876 * 1 2 3 32 32 H 1.08996 * 109.46908 * 180.35624 * 1 2 3 33 33 H 0.96997 * 120.00024 * 20.23544 * 6 4 2 34 34 H 1.08995 * 109.46781 * 299.99983 * 9 7 6 35 35 H 1.08998 * 109.47220 * 59.99800 * 9 7 6 36 36 H 0.97001 * 120.00173 * 180.02562 * 14 13 11 37 37 H 1.08990 * 111.00503 * 277.23119 * 19 4 2 38 38 H 1.09005 * 111.00050 * 153.37884 * 19 4 2 39 39 H 1.09005 * 110.36268 * 204.15006 * 20 19 4 40 40 H 1.09000 * 110.46444 * 81.87342 * 20 19 4 41 41 H 1.07999 * 126.81352 * 0.03956 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0578 -0.7477 -1.2427 5 1 1.3054 -1.4406 -1.6197 6 7 2.4632 0.1940 -2.2892 7 6 2.5609 -0.2208 -3.5679 8 8 2.3128 -1.3734 -3.8522 9 6 2.9785 0.7477 -4.6443 10 16 3.0163 -0.1042 -6.2409 11 6 3.5206 1.2232 -7.2840 12 1 3.7022 2.2013 -6.8637 13 6 3.6836 1.0119 -8.6461 14 7 4.0599 2.0037 -9.4256 15 14 3.3690 -0.6798 -9.3732 16 1 1.9446 -0.7869 -9.7792 17 1 4.2384 -0.8777 -10.5607 18 1 3.6737 -1.7195 -8.3577 19 6 3.2865 -1.5182 -0.6915 20 6 2.8100 -1.8824 0.7368 21 7 2.0300 -0.7140 1.1839 22 6 1.8074 -0.3620 2.4657 23 8 1.1099 0.6015 2.7193 24 6 2.4085 -1.1440 3.5589 25 6 2.4017 -0.8406 4.8949 26 7 3.0597 -1.8253 5.5072 27 7 3.4532 -2.6836 4.6354 28 7 3.0914 -2.3272 3.4526 29 1 3.2710 -2.8106 2.6311 30 1 -0.3634 0.5194 0.8867 31 1 -0.3633 0.5082 -0.8932 32 1 -0.3633 -1.0276 0.0064 33 1 2.6612 1.1159 -2.0619 34 1 2.2659 1.5713 -4.6883 35 1 3.9708 1.1376 -4.4173 36 1 4.1734 1.8562 -10.3776 37 1 4.1670 -0.8767 -0.6579 38 1 3.4808 -2.4154 -1.2792 39 1 3.6656 -2.0411 1.3932 40 1 2.1806 -2.7721 0.7133 41 1 1.9516 0.0240 5.3599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488143620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:49 Heat of formation + Delta-G solvation = 14.764205 kcal Electronic energy + Delta-G solvation = -26290.313682 eV Core-core repulsion = 22333.256648 eV Total energy + Delta-G solvation = -3957.057034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.54629 -41.69835 -40.48733 -38.76917 -35.70095 -34.69481 -34.64529 -33.05971 -32.43689 -31.91118 -30.34536 -27.86173 -26.72501 -25.94772 -24.26147 -23.58802 -22.69668 -21.79576 -21.44777 -19.88526 -19.11332 -18.34976 -18.13929 -17.62383 -17.33431 -17.14108 -17.02077 -16.45720 -16.38130 -15.74470 -15.46296 -15.28784 -14.99864 -14.85162 -14.75568 -14.48710 -14.08014 -13.69424 -13.44838 -13.35422 -13.32892 -13.18909 -13.00303 -12.72426 -12.65493 -12.45641 -12.32980 -11.99231 -11.86702 -11.84305 -11.44488 -11.16238 -11.02549 -10.74198 -10.52394 -10.21662 -10.00617 -8.97501 -8.50521 -6.20938 -0.29127 0.97841 1.10910 1.19406 1.32689 1.45251 1.51044 1.54497 1.63813 1.82491 2.22693 2.26625 2.71982 2.87910 2.89762 3.17958 3.29942 3.53184 3.76670 3.82280 3.85648 3.94893 4.00138 4.02848 4.18049 4.24879 4.29589 4.45704 4.50749 4.56874 4.84254 4.87600 4.91796 4.97409 5.06316 5.20210 5.39657 5.52299 5.71418 6.02701 6.12899 6.39928 6.66173 6.94668 7.09002 7.15139 8.61724 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031745 B = 0.002011 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.821677 B =13922.962853 C =14276.177996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.094 0.906 4 C 0.141 3.859 5 H 0.101 0.899 6 N -0.705 5.705 7 C 0.545 3.455 8 O -0.552 6.552 9 C -0.114 4.114 10 S -0.171 6.171 11 C -0.529 4.529 12 H 0.062 0.938 13 C 0.043 3.957 14 N -0.918 5.918 15 Si 0.915 3.085 16 H -0.263 1.263 17 H -0.262 1.262 18 H -0.233 1.233 19 C -0.138 4.138 20 C 0.081 3.919 21 N -0.605 5.605 22 C 0.617 3.383 23 O -0.538 6.538 24 C -0.062 4.062 25 C 0.032 3.968 26 N -0.295 5.295 27 N -0.060 5.060 28 N -0.358 5.358 29 H 0.463 0.537 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.417 0.583 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.276 0.724 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.382 -7.599 26.326 27.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.111 0.889 4 C 0.035 3.965 5 H 0.119 0.881 6 N -0.359 5.359 7 C 0.330 3.670 8 O -0.429 6.429 9 C -0.265 4.265 10 S 0.055 5.945 11 C -0.677 4.677 12 H 0.080 0.920 13 C -0.162 4.162 14 N -0.556 5.556 15 Si 0.737 3.263 16 H -0.188 1.188 17 H -0.187 1.187 18 H -0.157 1.157 19 C -0.178 4.178 20 C -0.042 4.042 21 N -0.339 5.339 22 C 0.403 3.597 23 O -0.413 6.413 24 C -0.197 4.197 25 C -0.128 4.128 26 N -0.159 5.159 27 N -0.042 5.042 28 N -0.094 5.094 29 H 0.319 0.681 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.255 0.745 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.429 -9.887 26.827 28.796 hybrid contribution -0.002 2.133 -1.564 2.645 sum -3.431 -7.754 25.263 26.648 Atomic orbital electron populations 1.22118 0.93411 1.03050 1.03289 1.21683 0.95362 0.96689 0.82696 0.88857 1.21978 0.97448 0.91143 0.85931 0.88127 1.45608 1.70050 1.14831 1.05371 1.19802 0.76111 0.87788 0.83259 1.90704 1.49737 1.20140 1.82358 1.23285 1.06679 1.01661 0.94906 1.84655 1.90145 1.18331 1.01332 1.22481 1.52598 0.97061 0.95557 0.92017 1.25600 0.93232 1.00876 0.96520 1.70021 1.46071 1.33454 1.06036 0.85851 0.79544 0.80741 0.80135 1.18794 1.18660 1.15702 1.23192 0.98110 1.02444 0.94009 1.22885 0.95849 0.89290 0.96178 1.48334 1.52363 1.28988 1.04195 1.16320 0.80085 0.83120 0.80130 1.90882 1.38993 1.28505 1.82922 1.22133 1.07697 0.92389 0.97455 1.24305 0.99005 1.00311 0.89214 1.75026 1.13621 1.02038 1.25225 1.78197 1.17753 1.20771 0.87468 1.46393 1.35496 1.16489 1.10992 0.68071 0.91854 0.90592 0.91705 0.74517 0.86909 0.86759 0.91447 0.89077 0.88304 0.88879 0.87358 0.76272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.10 71.98 0.66 -1.51 16 2 C 0.14 1.65 3.23 45.35 0.15 1.80 16 3 H 0.09 1.09 7.70 -2.38 -0.02 1.07 16 4 C 0.14 1.89 2.76 46.18 0.13 2.02 16 5 H 0.10 1.66 7.39 -2.38 -0.02 1.64 16 6 N -0.70 -11.91 5.21 -436.88 -2.28 -14.18 16 7 C 0.54 15.17 7.85 87.66 0.69 15.86 16 8 O -0.55 -19.57 15.59 -3.04 -0.05 -19.62 16 9 C -0.11 -3.77 6.16 71.24 0.44 -3.34 16 10 S -0.17 -8.03 18.55 -56.49 -1.05 -9.08 16 11 C -0.53 -29.57 10.04 67.95 0.68 -28.89 16 12 H 0.06 3.65 8.03 -2.91 -0.02 3.63 16 13 C 0.04 2.45 5.50 84.86 0.47 2.92 16 14 N -0.92 -54.67 13.97 21.65 0.30 -54.37 16 15 Si 0.92 43.40 27.74 68.60 1.90 45.31 16 16 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.23 -10.88 6.74 99.48 0.67 -10.21 16 19 C -0.14 -1.31 6.77 31.99 0.22 -1.10 16 20 C 0.08 0.41 5.55 86.85 0.48 0.89 16 21 N -0.60 -6.37 3.06 -792.08 -2.43 -8.80 16 22 C 0.62 9.03 7.64 86.61 0.66 9.69 16 23 O -0.54 -11.30 15.89 -4.09 -0.07 -11.37 16 24 C -0.06 -0.80 6.93 40.41 0.28 -0.52 16 25 C 0.03 0.46 11.88 84.18 1.00 1.46 16 26 N -0.29 -5.40 12.35 -57.50 -0.71 -6.11 16 27 N -0.06 -0.95 13.35 37.02 0.49 -0.46 16 28 N -0.36 -3.53 6.38 -48.52 -0.31 -3.84 16 29 H 0.46 1.41 5.38 -219.90 -1.18 0.23 16 30 H 0.06 1.05 6.81 -2.39 -0.02 1.04 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.42 4.87 8.33 -92.71 -0.77 4.10 16 34 H 0.11 3.43 8.14 -2.40 -0.02 3.41 16 35 H 0.11 3.44 8.14 -2.40 -0.02 3.42 16 36 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.09 0.12 5.51 -2.38 -0.01 0.11 16 40 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.22 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -77.57 358.95 0.77 -76.80 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -0.89 Total: 6.43 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 5.84 Total: -0.71 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -4.93 Total: -87.76 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.11 Total: -30.98 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.90 Total: 45.31 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.05 Total: -9.08 kcal Total: -77.57 0.77 -76.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488143620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.565 kcal (2) G-P(sol) polarization free energy of solvation -77.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds