Wall clock time and date at job start Tue Mar 31 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.87530 * 2 1 4 4 C 1.54322 * 109.88270 * 121.01980 * 2 1 3 5 5 H 1.08996 * 110.72258 * 23.40238 * 4 2 1 6 6 N 1.46494 * 110.71975 * 260.30186 * 4 2 1 7 7 C 1.34778 * 119.99982 * 157.44273 * 6 4 2 8 8 O 1.21283 * 119.99956 * 0.02562 * 7 6 4 9 9 C 1.50703 * 119.99832 * 180.02562 * 7 6 4 10 10 S 1.80998 * 109.46838 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99988 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00422 * 359.97438 * 11 10 9 13 13 C 1.38806 * 120.00179 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99840 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99962 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47503 * 59.99366 * 15 13 11 17 17 H 1.48503 * 109.46850 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46681 * 299.99384 * 15 13 11 19 19 C 1.55157 * 102.94247 * 141.76379 * 4 2 1 20 20 C 1.54912 * 101.58101 * 324.49659 * 19 4 2 21 21 N 1.47030 * 110.00732 * 238.90494 * 2 1 3 22 22 C 1.34772 * 125.65002 * 61.60770 * 21 2 1 23 23 O 1.21621 * 119.99865 * 357.68619 * 22 21 2 24 24 C 1.47226 * 120.00316 * 177.69202 * 22 21 2 25 25 C 1.37001 * 127.19327 * 187.63053 * 24 22 21 26 26 N 1.33324 * 106.37622 * 179.97438 * 25 24 22 27 27 N 1.28509 * 109.43809 * 359.97438 * 26 25 24 28 28 N 1.28718 * 110.63740 * 359.75822 * 27 26 25 29 29 H 0.97001 * 126.03984 * 180.26227 * 28 27 26 30 30 H 1.09001 * 109.46820 * 298.97963 * 1 2 3 31 31 H 1.08993 * 109.47041 * 58.98134 * 1 2 3 32 32 H 1.09003 * 109.46928 * 178.98247 * 1 2 3 33 33 H 0.97005 * 120.00020 * 337.44256 * 6 4 2 34 34 H 1.09001 * 109.46937 * 299.99888 * 9 7 6 35 35 H 1.08995 * 109.47295 * 60.00195 * 9 7 6 36 36 H 0.97000 * 120.00153 * 179.97438 * 14 13 11 37 37 H 1.08996 * 111.00787 * 82.56977 * 19 4 2 38 38 H 1.08999 * 111.00867 * 206.42552 * 19 4 2 39 39 H 1.09003 * 110.36724 * 278.16810 * 20 19 4 40 40 H 1.08997 * 110.36702 * 155.84786 * 20 19 4 41 41 H 1.08004 * 126.81594 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 1.3062 -1.4458 1.6185 6 7 2.4482 0.1989 2.2901 7 6 2.4966 -0.2003 3.5765 8 8 2.2149 -1.3435 3.8677 9 6 2.9007 0.7738 4.6531 10 16 2.8697 -0.0569 6.2608 11 6 3.3677 1.2740 7.3026 12 1 3.5836 2.2423 6.8757 13 6 3.4836 1.0778 8.6718 14 7 3.2209 -0.1024 9.1921 15 14 4.0108 2.4891 9.7762 16 1 3.0369 3.6034 9.6546 17 1 4.0567 2.0239 11.1858 18 1 5.3576 2.9617 9.3663 19 6 3.2900 -1.5102 0.6953 20 6 2.8195 -1.8770 -0.7344 21 7 2.0331 -0.7135 -1.1830 22 6 1.8125 -0.3617 -2.4652 23 8 1.1112 0.5986 -2.7203 24 6 2.4204 -1.1400 -3.5572 25 6 2.4166 -0.8356 -4.8929 26 7 3.0817 -1.8163 -5.5039 27 7 3.4768 -2.6732 -4.6315 28 7 3.1139 -2.3170 -3.4490 29 1 3.2970 -2.7979 -2.6267 30 1 -0.3633 0.4979 0.8990 31 1 -0.3633 0.5295 -0.8807 32 1 -0.3633 -1.0275 -0.0183 33 1 2.6739 1.1131 2.0572 34 1 3.9078 1.1394 4.4528 35 1 2.2049 1.6127 4.6637 36 1 3.3023 -0.2397 10.1489 37 1 4.1665 -0.8629 0.6641 38 1 3.4888 -2.4063 1.2831 39 1 2.1956 -2.7704 -0.7108 40 1 3.6778 -2.0298 -1.3886 41 1 1.9645 0.0276 -5.3587 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488143621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:53 Heat of formation + Delta-G solvation = 42.047164 kcal Electronic energy + Delta-G solvation = -26232.426242 eV Core-core repulsion = 22276.552286 eV Total energy + Delta-G solvation = -3955.873956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.92435 -40.96628 -39.37395 -37.92304 -34.83653 -33.89195 -32.49819 -32.35661 -31.78081 -31.04901 -29.08607 -26.08146 -25.50348 -25.30238 -23.58064 -22.97054 -21.95620 -20.93418 -20.51198 -18.50791 -17.99913 -17.61992 -17.26334 -16.81663 -16.28096 -16.21990 -15.64249 -15.09311 -14.88455 -14.86503 -14.73147 -14.26484 -14.03597 -13.82856 -13.49213 -13.24955 -12.89479 -12.72717 -12.67575 -12.55267 -12.22412 -12.04741 -11.81090 -11.57930 -11.35467 -11.23603 -11.11859 -11.09166 -10.83834 -10.71502 -10.09526 -9.90538 -9.62877 -9.43816 -9.18356 -9.11064 -8.34319 -6.58967 -6.28647 -4.00155 0.32798 1.76139 1.78535 2.09752 2.46618 2.85651 2.88432 3.18728 3.22125 3.24882 3.47166 3.54001 3.78373 3.87232 4.13188 4.14412 4.33763 4.43041 4.50592 4.53993 4.62415 4.66838 4.89175 4.97202 5.06801 5.11888 5.17220 5.44276 5.46479 5.50057 5.52356 5.65800 5.72327 5.76788 5.87798 5.98947 6.02530 6.35196 6.64126 7.31184 7.44736 7.52758 7.72296 8.27945 8.38410 9.16840 10.78644 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032078 B = 0.001925 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.662392 B =14539.055584 C =14795.701083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 H 0.089 0.911 4 C 0.142 3.858 5 H 0.111 0.889 6 N -0.730 5.730 7 C 0.537 3.463 8 O -0.513 6.513 9 C -0.154 4.154 10 S -0.058 6.058 11 C -0.538 4.538 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.274 1.274 19 C -0.143 4.143 20 C 0.081 3.919 21 N -0.609 5.609 22 C 0.613 3.387 23 O -0.507 6.507 24 C -0.064 4.064 25 C 0.035 3.965 26 N -0.269 5.269 27 N -0.047 5.047 28 N -0.379 5.379 29 H 0.451 0.549 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.401 0.599 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.270 0.730 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.305 -1.683 -24.013 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 H 0.107 0.893 4 C 0.036 3.964 5 H 0.129 0.871 6 N -0.385 5.385 7 C 0.323 3.677 8 O -0.386 6.386 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.686 4.686 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.183 4.183 20 C -0.043 4.043 21 N -0.344 5.344 22 C 0.399 3.601 23 O -0.379 6.379 24 C -0.198 4.198 25 C -0.124 4.124 26 N -0.134 5.134 27 N -0.029 5.029 28 N -0.112 5.112 29 H 0.304 0.696 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.236 0.764 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.492 -4.142 -24.487 24.880 hybrid contribution 0.478 3.046 1.428 3.398 sum -1.013 -1.096 -23.059 23.108 Atomic orbital electron populations 1.22164 0.93182 1.03033 1.03835 1.21810 0.95690 0.96496 0.83004 0.89336 1.21889 0.96561 0.91569 0.86428 0.87079 1.45946 1.71995 1.14332 1.06213 1.20364 0.76092 0.88961 0.82241 1.90711 1.46592 1.19609 1.81676 1.23540 1.04272 1.01871 1.00823 1.85385 1.89497 1.16633 0.91670 1.22816 1.53561 0.98015 0.94177 0.90928 1.24995 0.94813 0.96582 0.97148 1.69998 1.45496 1.21755 1.12984 0.86218 0.79175 0.81174 0.78915 1.19904 1.20780 1.19920 1.23258 0.99036 1.02848 0.93121 1.22699 0.94783 0.89670 0.97103 1.48375 1.52404 1.28826 1.04841 1.16323 0.80550 0.83487 0.79757 1.90888 1.37418 1.27251 1.82392 1.22288 1.07225 0.92416 0.97873 1.23958 0.99364 1.00206 0.88906 1.75032 1.12558 1.01332 1.24434 1.78241 1.17361 1.20492 0.86803 1.46445 1.36376 1.17416 1.10993 0.69602 0.90658 0.90655 0.92027 0.76418 0.89088 0.89024 0.92065 0.89456 0.88066 0.89607 0.90992 0.77740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.10 37.16 0.34 -0.99 16 2 C 0.13 1.01 3.21 -66.95 -0.22 0.79 16 3 H 0.09 0.67 7.70 -51.93 -0.40 0.27 16 4 C 0.14 1.22 2.79 -66.10 -0.18 1.04 16 5 H 0.11 1.13 7.33 -51.93 -0.38 0.75 16 6 N -0.73 -7.61 5.20 -52.03 -0.27 -7.89 16 7 C 0.54 8.54 7.85 -10.98 -0.09 8.45 16 8 O -0.51 -10.10 15.55 5.55 0.09 -10.01 16 9 C -0.15 -2.81 6.16 36.01 0.22 -2.58 16 10 S -0.06 -1.49 20.57 -107.50 -2.21 -3.71 16 11 C -0.54 -14.72 9.50 30.94 0.29 -14.42 16 12 H 0.07 1.87 7.80 -52.49 -0.41 1.47 16 13 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 14 N -0.87 -25.39 13.22 55.49 0.73 -24.65 16 15 Si 0.92 20.78 29.55 -169.99 -5.02 15.76 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 C -0.14 -0.96 6.78 -24.58 -0.17 -1.12 16 20 C 0.08 0.37 5.55 -2.53 -0.01 0.36 16 21 N -0.61 -4.23 3.07 -164.34 -0.50 -4.73 16 22 C 0.61 5.28 7.65 -12.61 -0.10 5.18 16 23 O -0.51 -5.78 15.91 5.26 0.08 -5.70 16 24 C -0.06 -0.49 6.93 -82.34 -0.57 -1.06 16 25 C 0.04 0.29 11.87 -17.35 -0.21 0.08 16 26 N -0.27 -2.66 12.35 30.47 0.38 -2.29 16 27 N -0.05 -0.42 13.35 60.35 0.81 0.38 16 28 N -0.38 -2.42 6.39 33.31 0.21 -2.20 16 29 H 0.45 1.52 5.37 -190.33 -1.02 0.49 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.70 6.84 -51.93 -0.36 0.34 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.40 3.19 8.34 -40.82 -0.34 2.85 16 34 H 0.09 1.52 8.14 -51.91 -0.42 1.10 16 35 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.21 5.50 -51.93 -0.29 -0.08 16 41 H 0.21 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -35.67 361.59 -6.75 -42.42 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.71 Total: -0.51 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -0.78 Total: -2.32 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 1.35 Total: -41.38 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.17 Total: -15.71 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.67 -6.75 -42.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488143621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.468 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds