Wall clock time and date at job start Tue Mar 31 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.87530 * 2 1 4 4 C 1.54322 * 109.88270 * 121.01980 * 2 1 3 5 5 H 1.08996 * 110.72258 * 23.40238 * 4 2 1 6 6 N 1.46494 * 110.71975 * 260.30186 * 4 2 1 7 7 C 1.34778 * 119.99982 * 157.44273 * 6 4 2 8 8 O 1.21283 * 119.99956 * 0.02562 * 7 6 4 9 9 C 1.50703 * 119.99832 * 180.02562 * 7 6 4 10 10 S 1.80998 * 109.46838 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99988 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00422 * 359.97438 * 11 10 9 13 13 C 1.38806 * 120.00179 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99840 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99962 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47503 * 59.99366 * 15 13 11 17 17 H 1.48503 * 109.46850 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46681 * 299.99384 * 15 13 11 19 19 C 1.55157 * 102.94247 * 141.76379 * 4 2 1 20 20 C 1.54912 * 101.58101 * 324.49659 * 19 4 2 21 21 N 1.47030 * 110.00732 * 238.90494 * 2 1 3 22 22 C 1.34772 * 125.65002 * 61.60770 * 21 2 1 23 23 O 1.21621 * 119.99865 * 357.68619 * 22 21 2 24 24 C 1.47226 * 120.00316 * 177.69202 * 22 21 2 25 25 C 1.37001 * 127.19327 * 187.63053 * 24 22 21 26 26 N 1.33324 * 106.37622 * 179.97438 * 25 24 22 27 27 N 1.28509 * 109.43809 * 359.97438 * 26 25 24 28 28 N 1.28718 * 110.63740 * 359.75822 * 27 26 25 29 29 H 0.97001 * 126.03984 * 180.26227 * 28 27 26 30 30 H 1.09001 * 109.46820 * 298.97963 * 1 2 3 31 31 H 1.08993 * 109.47041 * 58.98134 * 1 2 3 32 32 H 1.09003 * 109.46928 * 178.98247 * 1 2 3 33 33 H 0.97005 * 120.00020 * 337.44256 * 6 4 2 34 34 H 1.09001 * 109.46937 * 299.99888 * 9 7 6 35 35 H 1.08995 * 109.47295 * 60.00195 * 9 7 6 36 36 H 0.97000 * 120.00153 * 179.97438 * 14 13 11 37 37 H 1.08996 * 111.00787 * 82.56977 * 19 4 2 38 38 H 1.08999 * 111.00867 * 206.42552 * 19 4 2 39 39 H 1.09003 * 110.36724 * 278.16810 * 20 19 4 40 40 H 1.08997 * 110.36702 * 155.84786 * 20 19 4 41 41 H 1.08004 * 126.81594 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 1.3062 -1.4458 1.6185 6 7 2.4482 0.1989 2.2901 7 6 2.4966 -0.2003 3.5765 8 8 2.2149 -1.3435 3.8677 9 6 2.9007 0.7738 4.6531 10 16 2.8697 -0.0569 6.2608 11 6 3.3677 1.2740 7.3026 12 1 3.5836 2.2423 6.8757 13 6 3.4836 1.0778 8.6718 14 7 3.2209 -0.1024 9.1921 15 14 4.0108 2.4891 9.7762 16 1 3.0369 3.6034 9.6546 17 1 4.0567 2.0239 11.1858 18 1 5.3576 2.9617 9.3663 19 6 3.2900 -1.5102 0.6953 20 6 2.8195 -1.8770 -0.7344 21 7 2.0331 -0.7135 -1.1830 22 6 1.8125 -0.3617 -2.4652 23 8 1.1112 0.5986 -2.7203 24 6 2.4204 -1.1400 -3.5572 25 6 2.4166 -0.8356 -4.8929 26 7 3.0817 -1.8163 -5.5039 27 7 3.4768 -2.6732 -4.6315 28 7 3.1139 -2.3170 -3.4490 29 1 3.2970 -2.7979 -2.6267 30 1 -0.3633 0.4979 0.8990 31 1 -0.3633 0.5295 -0.8807 32 1 -0.3633 -1.0275 -0.0183 33 1 2.6739 1.1131 2.0572 34 1 3.9078 1.1394 4.4528 35 1 2.2049 1.6127 4.6637 36 1 3.3023 -0.2397 10.1489 37 1 4.1665 -0.8629 0.6641 38 1 3.4888 -2.4063 1.2831 39 1 2.1956 -2.7704 -0.7108 40 1 3.6778 -2.0298 -1.3886 41 1 1.9645 0.0276 -5.3587 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488143621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:53 Heat of formation + Delta-G solvation = 14.414657 kcal Electronic energy + Delta-G solvation = -26233.624477 eV Core-core repulsion = 22276.552286 eV Total energy + Delta-G solvation = -3957.072192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.54279 -41.68677 -40.45305 -38.75904 -35.68566 -34.67148 -34.56789 -33.05186 -32.42983 -31.88905 -30.28998 -27.68164 -26.69638 -25.94441 -24.25049 -23.57543 -22.67120 -21.79233 -21.42844 -19.83085 -19.10686 -18.33798 -18.11229 -17.60470 -17.29056 -17.09189 -16.86632 -16.42723 -16.36397 -15.81369 -15.45866 -15.32331 -14.89859 -14.78708 -14.52384 -14.39996 -14.03311 -13.66538 -13.43085 -13.34075 -13.17144 -13.15701 -12.86823 -12.72392 -12.63229 -12.46014 -12.32970 -11.99630 -11.85669 -11.73540 -11.44198 -11.12148 -10.97195 -10.73923 -10.26487 -10.19181 -10.00140 -8.64323 -8.34023 -6.10985 -0.28858 1.11106 1.15321 1.29122 1.43985 1.45253 1.52791 1.59599 1.63518 1.82839 2.26010 2.30627 2.90022 3.00315 3.18309 3.30146 3.33048 3.53951 3.78691 3.85336 3.87044 3.96946 4.02276 4.04257 4.18324 4.28040 4.33829 4.45837 4.54848 4.57308 4.84178 4.87862 4.92613 4.97470 5.06215 5.19789 5.42056 5.43065 5.52390 6.03273 6.20374 6.44195 6.66408 7.07910 7.09276 7.20997 8.74538 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032078 B = 0.001925 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.662392 B =14539.055584 C =14795.701083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.095 0.905 4 C 0.140 3.860 5 H 0.098 0.902 6 N -0.705 5.705 7 C 0.543 3.457 8 O -0.556 6.556 9 C -0.133 4.133 10 S -0.146 6.146 11 C -0.547 4.547 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.995 3.005 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.262 1.262 19 C -0.139 4.139 20 C 0.081 3.919 21 N -0.605 5.605 22 C 0.617 3.383 23 O -0.538 6.538 24 C -0.062 4.062 25 C 0.032 3.968 26 N -0.295 5.295 27 N -0.060 5.060 28 N -0.358 5.358 29 H 0.463 0.537 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.417 0.583 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 -0.454 -25.110 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.112 0.888 4 C 0.034 3.966 5 H 0.116 0.884 6 N -0.359 5.359 7 C 0.329 3.671 8 O -0.433 6.433 9 C -0.284 4.284 10 S 0.081 5.919 11 C -0.695 4.695 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.546 5.546 15 Si 0.817 3.183 16 H -0.188 1.188 17 H -0.205 1.205 18 H -0.187 1.187 19 C -0.178 4.178 20 C -0.041 4.041 21 N -0.338 5.338 22 C 0.404 3.596 23 O -0.413 6.413 24 C -0.197 4.197 25 C -0.128 4.128 26 N -0.159 5.159 27 N -0.042 5.042 28 N -0.094 5.094 29 H 0.319 0.681 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.255 0.745 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.696 -2.913 -25.624 25.799 hybrid contribution 0.210 2.656 1.660 3.139 sum -0.486 -0.257 -23.964 23.970 Atomic orbital electron populations 1.22114 0.93526 1.02979 1.03234 1.21681 0.95307 0.96690 0.82692 0.88750 1.21967 0.97498 0.91198 0.85955 0.88392 1.45619 1.70098 1.15480 1.04706 1.19926 0.76005 0.87766 0.83393 1.90706 1.48923 1.21111 1.82544 1.23388 1.06107 1.01934 0.96946 1.85517 1.89831 1.19380 0.97208 1.23178 1.53146 0.98371 0.94809 0.89949 1.26083 0.94705 0.99384 0.98907 1.70163 1.46959 1.24205 1.13310 0.85052 0.79220 0.77562 0.76490 1.18779 1.20547 1.18699 1.23195 0.98114 1.02444 0.94035 1.22876 0.95733 0.89428 0.96097 1.48333 1.52077 1.29230 1.04206 1.16320 0.80145 0.83073 0.80102 1.90880 1.38894 1.28646 1.82872 1.22133 1.07411 0.92674 0.97462 1.24306 0.98927 1.00345 0.89219 1.75025 1.13585 1.02074 1.25210 1.78196 1.17866 1.20662 0.87457 1.46408 1.35187 1.16831 1.10983 0.68079 0.90736 0.91742 0.91842 0.74538 0.87133 0.87264 0.92036 0.88935 0.88492 0.87452 0.88768 0.76234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.10 71.98 0.66 -1.73 16 2 C 0.14 1.83 3.21 45.34 0.15 1.97 16 3 H 0.09 1.18 7.70 -2.39 -0.02 1.16 16 4 C 0.14 2.14 2.79 46.18 0.13 2.27 16 5 H 0.10 1.87 7.33 -2.39 -0.02 1.85 16 6 N -0.70 -13.24 5.20 -436.93 -2.27 -15.51 16 7 C 0.54 16.71 7.85 87.66 0.69 17.39 16 8 O -0.56 -21.99 15.55 -3.04 -0.05 -22.03 16 9 C -0.13 -4.67 6.16 71.24 0.44 -4.23 16 10 S -0.15 -7.64 20.57 -56.49 -1.16 -8.80 16 11 C -0.55 -29.98 9.50 67.96 0.65 -29.33 16 12 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 13 C 0.01 0.78 5.49 84.86 0.47 1.25 16 14 N -0.91 -54.32 13.22 21.65 0.29 -54.03 16 15 Si 0.99 42.28 29.55 68.60 2.03 44.31 16 16 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 17 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 19 C -0.14 -1.51 6.78 31.99 0.22 -1.29 16 20 C 0.08 0.50 5.55 86.86 0.48 0.98 16 21 N -0.60 -6.92 3.07 -792.10 -2.43 -9.35 16 22 C 0.62 9.42 7.65 86.61 0.66 10.08 16 23 O -0.54 -11.57 15.91 -4.10 -0.07 -11.64 16 24 C -0.06 -0.83 6.93 40.40 0.28 -0.55 16 25 C 0.03 0.48 11.87 84.18 1.00 1.48 16 26 N -0.29 -5.50 12.35 -57.50 -0.71 -6.21 16 27 N -0.06 -0.98 13.35 37.02 0.49 -0.49 16 28 N -0.36 -3.74 6.39 -48.53 -0.31 -4.05 16 29 H 0.46 1.74 5.37 -219.90 -1.18 0.56 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.13 6.84 -2.39 -0.02 1.12 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.42 5.40 8.34 -92.70 -0.77 4.63 16 34 H 0.11 3.47 8.14 -2.40 -0.02 3.45 16 35 H 0.11 3.47 8.14 -2.40 -0.02 3.45 16 36 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.11 0.29 8.14 -2.39 -0.02 0.28 16 40 H 0.09 0.20 5.50 -2.39 -0.01 0.18 16 41 H 0.22 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -79.48 361.59 0.77 -78.71 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -0.85 Total: 10.81 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.81 Total: -1.71 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -4.94 Total: -89.64 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.11 Total: -33.67 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: -7.64 SS G_CDS: -1.16 Total: -8.80 kcal Total: -79.48 0.77 -78.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488143621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.125 kcal (2) G-P(sol) polarization free energy of solvation -79.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds