Wall clock time and date at job start Tue Mar 31 2020 23:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.00191 * 2 1 4 4 C 1.54326 * 109.88514 * 121.09553 * 2 1 3 5 5 H 1.08998 * 110.72086 * 215.76813 * 4 2 1 6 6 N 1.46497 * 110.71829 * 338.85984 * 4 2 1 7 7 C 1.34772 * 120.00258 * 204.99869 * 6 4 2 8 8 O 1.21286 * 120.00024 * 0.02562 * 7 6 4 9 9 C 1.50704 * 120.00418 * 179.97438 * 7 6 4 10 10 S 1.80996 * 109.47443 * 180.02562 * 9 7 6 11 11 C 1.76196 * 99.99983 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00244 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99836 * 179.72921 * 11 10 9 14 14 N 1.31637 * 120.00159 * 0.27319 * 13 11 10 15 15 Si 1.86800 * 119.99949 * 180.27820 * 13 11 10 16 16 H 1.48491 * 109.47420 * 89.99644 * 15 13 11 17 17 H 1.48508 * 109.47120 * 209.99681 * 15 13 11 18 18 H 1.48501 * 109.46987 * 329.99450 * 15 13 11 19 19 C 1.55157 * 102.94344 * 97.22561 * 4 2 1 20 20 C 1.54905 * 101.58302 * 35.50406 * 19 4 2 21 21 N 1.47022 * 109.88546 * 238.90032 * 2 1 3 22 22 C 1.34779 * 125.64510 * 59.55783 * 21 2 1 23 23 O 1.21623 * 120.00051 * 354.52359 * 22 21 2 24 24 C 1.47236 * 120.00190 * 174.52457 * 22 21 2 25 25 C 1.37005 * 127.18927 * 173.55144 * 24 22 21 26 26 N 1.33323 * 106.37184 * 179.97438 * 25 24 22 27 27 N 1.28523 * 109.43637 * 0.02562 * 26 25 24 28 28 N 1.28710 * 110.63801 * 359.71007 * 27 26 25 29 29 H 0.96996 * 126.03666 * 180.29742 * 28 27 26 30 30 H 1.08997 * 109.47127 * 298.90357 * 1 2 3 31 31 H 1.08998 * 109.47322 * 58.90931 * 1 2 3 32 32 H 1.09002 * 109.46752 * 178.90688 * 1 2 3 33 33 H 0.97001 * 119.99948 * 24.99976 * 6 4 2 34 34 H 1.09006 * 109.46608 * 60.00365 * 9 7 6 35 35 H 1.08996 * 109.47336 * 300.00850 * 9 7 6 36 36 H 0.97004 * 119.99900 * 180.02562 * 14 13 11 37 37 H 1.09003 * 111.00191 * 153.58085 * 19 4 2 38 38 H 1.09004 * 111.00190 * 277.42718 * 19 4 2 39 39 H 1.09001 * 110.36530 * 204.15309 * 20 19 4 40 40 H 1.08994 * 110.37179 * 81.83005 * 20 19 4 41 41 H 1.07999 * 126.81621 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.9639 -0.2812 1.6201 6 7 1.0294 -0.8026 2.2875 7 6 1.3896 -0.9366 3.5793 8 8 2.5629 -1.0128 3.8768 9 6 0.3347 -0.9906 4.6541 10 16 1.1288 -1.1720 6.2704 11 6 -0.2945 -1.2079 7.3083 12 1 -1.2807 -1.1266 6.8756 13 6 -0.1486 -1.3458 8.6817 14 7 1.0534 -1.4443 9.2094 15 14 -1.6579 -1.3916 9.7814 16 1 -2.1132 -2.7962 9.9389 17 1 -1.3174 -0.8294 11.1131 18 1 -2.7430 -0.5855 9.1665 19 6 2.3520 -2.1695 0.6924 20 6 2.8569 -1.8498 -0.7367 21 7 2.0301 -0.7141 -1.1838 22 6 1.7754 -0.3846 -2.4657 23 8 0.9980 0.5158 -2.7192 24 6 2.4381 -1.1146 -3.5591 25 6 2.1999 -0.9889 -4.9025 26 7 3.0266 -1.8392 -5.5118 27 7 3.7317 -2.4552 -4.6314 28 7 3.4262 -2.0574 -3.4461 29 1 3.8235 -2.3712 -2.6188 30 1 -0.3633 0.4967 0.8996 31 1 -0.3634 0.5307 -0.8800 32 1 -0.3633 -1.0275 -0.0196 33 1 0.0910 -0.7413 2.0496 34 1 -0.3235 -1.8408 4.4748 35 1 -0.2485 -0.0699 4.6375 36 1 1.1553 -1.5410 10.1692 37 1 3.1271 -2.6618 1.2797 38 1 1.4452 -2.7737 0.6604 39 1 2.7089 -2.7081 -1.3922 40 1 3.9092 -1.5667 -0.7129 41 1 1.4845 -0.3316 -5.3742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488143622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:56 Heat of formation + Delta-G solvation = 45.425062 kcal Electronic energy + Delta-G solvation = -26317.093084 eV Core-core repulsion = 22361.365605 eV Total energy + Delta-G solvation = -3955.727480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.92204 -41.04235 -39.38572 -37.92107 -34.93542 -33.87738 -32.49643 -32.22196 -31.79047 -30.94005 -28.97530 -26.34306 -25.54772 -25.34276 -23.56962 -23.10052 -21.91055 -20.91867 -20.04138 -18.75549 -18.08534 -17.46550 -17.17623 -16.71360 -16.56538 -16.28657 -15.66444 -15.06534 -14.88846 -14.86404 -14.71763 -14.31887 -14.01314 -13.78125 -13.50198 -13.24064 -12.90304 -12.72054 -12.66322 -12.59677 -12.31935 -12.01864 -11.79743 -11.48224 -11.34842 -11.24718 -11.12289 -11.08933 -10.82652 -10.67071 -10.09572 -9.89310 -9.60707 -9.44215 -9.17365 -9.11131 -8.33472 -6.58609 -6.28673 -3.99999 0.32165 1.75378 1.79873 2.10575 2.46399 2.86658 2.89465 3.17602 3.22524 3.26182 3.49805 3.55113 3.79560 3.89839 4.13489 4.15519 4.34103 4.40699 4.49499 4.59393 4.62331 4.65890 4.89138 4.97601 5.02203 5.06905 5.18573 5.42936 5.45941 5.46920 5.54371 5.61068 5.67174 5.76512 5.90604 5.99397 6.02645 6.37027 6.64926 7.31333 7.46318 7.53185 7.71695 8.28261 8.39881 9.16994 10.78658 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.035875 B = 0.001935 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.293963 B =14465.433764 C =14899.989731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.132 3.868 3 H 0.092 0.908 4 C 0.142 3.858 5 H 0.111 0.889 6 N -0.732 5.732 7 C 0.535 3.465 8 O -0.514 6.514 9 C -0.155 4.155 10 S -0.058 6.058 11 C -0.537 4.537 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.141 4.141 20 C 0.079 3.921 21 N -0.610 5.610 22 C 0.613 3.387 23 O -0.506 6.506 24 C -0.064 4.064 25 C 0.035 3.965 26 N -0.269 5.269 27 N -0.046 5.046 28 N -0.378 5.378 29 H 0.451 0.549 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.403 0.597 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.269 0.731 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 -0.224 -24.235 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.029 3.971 3 H 0.110 0.890 4 C 0.035 3.965 5 H 0.129 0.871 6 N -0.389 5.389 7 C 0.321 3.679 8 O -0.387 6.387 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.180 4.180 20 C -0.045 4.045 21 N -0.345 5.345 22 C 0.399 3.601 23 O -0.379 6.379 24 C -0.198 4.198 25 C -0.124 4.124 26 N -0.134 5.134 27 N -0.028 5.028 28 N -0.109 5.109 29 H 0.302 0.698 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.241 0.759 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.974 -0.715 -24.704 25.032 hybrid contribution -3.082 0.429 1.443 3.430 sum 0.891 -0.286 -23.261 23.280 Atomic orbital electron populations 1.22206 0.93921 1.03067 1.04078 1.21800 0.95767 0.96400 0.83106 0.88964 1.21813 0.93238 0.94917 0.86558 0.87077 1.46212 1.09748 1.77237 1.05702 1.20393 0.90301 0.74746 0.82413 1.90708 1.19003 1.47213 1.81785 1.23541 1.00967 1.05108 1.00908 1.85388 1.11112 1.95676 0.91013 1.22856 0.93324 1.58465 0.93851 0.90879 1.24997 0.96956 0.94464 0.97148 1.70013 1.21451 1.46220 1.12546 0.86161 0.81521 0.78471 0.79318 1.20254 1.20716 1.19671 1.23238 1.03468 0.98236 0.93083 1.22664 0.95782 0.88603 0.97431 1.48389 1.50828 1.30490 1.04816 1.16321 0.81292 0.82696 0.79763 1.90881 1.34525 1.30063 1.82455 1.22292 0.99295 1.00530 0.97712 1.23956 1.00133 0.99475 0.88852 1.75039 1.06193 1.07746 1.24388 1.78249 1.19294 1.18783 0.86515 1.46232 1.26461 1.27517 1.10696 0.69780 0.90525 0.89959 0.91857 0.75909 0.89116 0.89058 0.92128 0.88155 0.89506 0.90619 0.89897 0.77738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 7.92 37.16 0.29 -1.00 16 2 C 0.13 1.00 3.51 -66.95 -0.24 0.77 16 3 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.14 1.22 3.19 -66.10 -0.21 1.01 16 5 H 0.11 1.12 7.55 -51.93 -0.39 0.72 16 6 N -0.73 -7.79 4.89 -52.03 -0.25 -8.04 16 7 C 0.53 8.60 7.85 -10.99 -0.09 8.51 16 8 O -0.51 -10.19 15.51 5.55 0.09 -10.11 16 9 C -0.15 -2.83 6.16 36.01 0.22 -2.61 16 10 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 11 C -0.54 -14.72 9.50 30.94 0.29 -14.43 16 12 H 0.07 1.89 7.80 -52.49 -0.41 1.49 16 13 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 14 N -0.87 -25.41 13.22 55.49 0.73 -24.68 16 15 Si 0.92 20.81 29.55 -169.99 -5.02 15.78 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 C -0.14 -0.94 6.77 -24.58 -0.17 -1.10 16 20 C 0.08 0.35 5.29 -2.53 -0.01 0.34 16 21 N -0.61 -4.17 3.08 -164.35 -0.51 -4.67 16 22 C 0.61 5.21 7.65 -12.60 -0.10 5.11 16 23 O -0.51 -5.70 15.66 5.26 0.08 -5.62 16 24 C -0.06 -0.49 6.90 -82.33 -0.57 -1.05 16 25 C 0.04 0.29 11.87 -17.35 -0.21 0.08 16 26 N -0.27 -2.64 12.35 30.47 0.38 -2.26 16 27 N -0.05 -0.41 13.35 60.35 0.81 0.39 16 28 N -0.38 -2.35 6.36 33.31 0.21 -2.14 16 29 H 0.45 1.44 5.56 -190.34 -1.06 0.39 16 30 H 0.08 0.52 6.76 -51.93 -0.35 0.17 16 31 H 0.08 0.73 6.61 -51.93 -0.34 0.39 16 32 H 0.06 0.44 8.03 -51.93 -0.42 0.03 16 33 H 0.40 3.42 5.86 -40.82 -0.24 3.18 16 34 H 0.09 1.52 8.14 -51.91 -0.42 1.10 16 35 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.22 6.24 -51.93 -0.32 -0.10 16 40 H 0.08 0.23 7.89 -51.93 -0.41 -0.18 16 41 H 0.21 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -35.69 357.35 -6.80 -42.49 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.62 Total: -0.39 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.87 Total: -2.42 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 1.37 Total: -41.40 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.17 Total: -15.73 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.69 -6.80 -42.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488143622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.913 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds