Wall clock time and date at job start Tue Mar 31 2020 23:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.00191 * 2 1 4 4 C 1.54326 * 109.88514 * 121.09553 * 2 1 3 5 5 H 1.08998 * 110.72086 * 215.76813 * 4 2 1 6 6 N 1.46497 * 110.71829 * 338.85984 * 4 2 1 7 7 C 1.34772 * 120.00258 * 204.99869 * 6 4 2 8 8 O 1.21286 * 120.00024 * 0.02562 * 7 6 4 9 9 C 1.50704 * 120.00418 * 179.97438 * 7 6 4 10 10 S 1.80996 * 109.47443 * 180.02562 * 9 7 6 11 11 C 1.76196 * 99.99983 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00244 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99836 * 179.72921 * 11 10 9 14 14 N 1.31637 * 120.00159 * 0.27319 * 13 11 10 15 15 Si 1.86800 * 119.99949 * 180.27820 * 13 11 10 16 16 H 1.48491 * 109.47420 * 89.99644 * 15 13 11 17 17 H 1.48508 * 109.47120 * 209.99681 * 15 13 11 18 18 H 1.48501 * 109.46987 * 329.99450 * 15 13 11 19 19 C 1.55157 * 102.94344 * 97.22561 * 4 2 1 20 20 C 1.54905 * 101.58302 * 35.50406 * 19 4 2 21 21 N 1.47022 * 109.88546 * 238.90032 * 2 1 3 22 22 C 1.34779 * 125.64510 * 59.55783 * 21 2 1 23 23 O 1.21623 * 120.00051 * 354.52359 * 22 21 2 24 24 C 1.47236 * 120.00190 * 174.52457 * 22 21 2 25 25 C 1.37005 * 127.18927 * 173.55144 * 24 22 21 26 26 N 1.33323 * 106.37184 * 179.97438 * 25 24 22 27 27 N 1.28523 * 109.43637 * 0.02562 * 26 25 24 28 28 N 1.28710 * 110.63801 * 359.71007 * 27 26 25 29 29 H 0.96996 * 126.03666 * 180.29742 * 28 27 26 30 30 H 1.08997 * 109.47127 * 298.90357 * 1 2 3 31 31 H 1.08998 * 109.47322 * 58.90931 * 1 2 3 32 32 H 1.09002 * 109.46752 * 178.90688 * 1 2 3 33 33 H 0.97001 * 119.99948 * 24.99976 * 6 4 2 34 34 H 1.09006 * 109.46608 * 60.00365 * 9 7 6 35 35 H 1.08996 * 109.47336 * 300.00850 * 9 7 6 36 36 H 0.97004 * 119.99900 * 180.02562 * 14 13 11 37 37 H 1.09003 * 111.00191 * 153.58085 * 19 4 2 38 38 H 1.09004 * 111.00190 * 277.42718 * 19 4 2 39 39 H 1.09001 * 110.36530 * 204.15309 * 20 19 4 40 40 H 1.08994 * 110.37179 * 81.83005 * 20 19 4 41 41 H 1.07999 * 126.81621 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.9639 -0.2812 1.6201 6 7 1.0294 -0.8026 2.2875 7 6 1.3896 -0.9366 3.5793 8 8 2.5629 -1.0128 3.8768 9 6 0.3347 -0.9906 4.6541 10 16 1.1288 -1.1720 6.2704 11 6 -0.2945 -1.2079 7.3083 12 1 -1.2807 -1.1266 6.8756 13 6 -0.1486 -1.3458 8.6817 14 7 1.0534 -1.4443 9.2094 15 14 -1.6579 -1.3916 9.7814 16 1 -2.1132 -2.7962 9.9389 17 1 -1.3174 -0.8294 11.1131 18 1 -2.7430 -0.5855 9.1665 19 6 2.3520 -2.1695 0.6924 20 6 2.8569 -1.8498 -0.7367 21 7 2.0301 -0.7141 -1.1838 22 6 1.7754 -0.3846 -2.4657 23 8 0.9980 0.5158 -2.7192 24 6 2.4381 -1.1146 -3.5591 25 6 2.1999 -0.9889 -4.9025 26 7 3.0266 -1.8392 -5.5118 27 7 3.7317 -2.4552 -4.6314 28 7 3.4262 -2.0574 -3.4461 29 1 3.8235 -2.3712 -2.6188 30 1 -0.3633 0.4967 0.8996 31 1 -0.3634 0.5307 -0.8800 32 1 -0.3633 -1.0275 -0.0196 33 1 0.0910 -0.7413 2.0496 34 1 -0.3235 -1.8408 4.4748 35 1 -0.2485 -0.0699 4.6375 36 1 1.1553 -1.5410 10.1692 37 1 3.1271 -2.6618 1.2797 38 1 1.4452 -2.7737 0.6604 39 1 2.7089 -2.7081 -1.3922 40 1 3.9092 -1.5667 -0.7129 41 1 1.4845 -0.3316 -5.3742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488143622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:56 Heat of formation + Delta-G solvation = 18.052295 kcal Electronic energy + Delta-G solvation = -26318.280057 eV Core-core repulsion = 22361.365605 eV Total energy + Delta-G solvation = -3956.914452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.53198 -41.76555 -40.44829 -38.77453 -35.78367 -34.62369 -34.56614 -32.93753 -32.40102 -31.83366 -30.15924 -27.68547 -26.95063 -25.99530 -24.22680 -23.67292 -22.69308 -21.81428 -20.86960 -19.89801 -19.32609 -18.29593 -17.94409 -17.66361 -17.33481 -17.10787 -16.86910 -16.55141 -16.35832 -15.78341 -15.46498 -15.33030 -14.94365 -14.87329 -14.46416 -14.32022 -13.96416 -13.66101 -13.43248 -13.29578 -13.21097 -13.13492 -12.90057 -12.86144 -12.61257 -12.42526 -12.16881 -11.98429 -11.85763 -11.72096 -11.37420 -11.13663 -10.97136 -10.73074 -10.26286 -10.19390 -9.98910 -8.64481 -8.34338 -6.11228 -0.28576 1.11191 1.18170 1.29335 1.42541 1.45860 1.54161 1.59368 1.63433 1.83681 2.25835 2.30491 2.92937 3.00140 3.20234 3.32125 3.34330 3.54064 3.80648 3.84339 3.91389 3.97923 4.01999 4.04725 4.18906 4.30197 4.34162 4.42663 4.53541 4.57149 4.85287 4.87194 4.91848 4.97269 5.03676 5.27669 5.41073 5.43192 5.53865 6.05329 6.20475 6.42811 6.67582 7.07775 7.09540 7.20474 8.74481 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.035875 B = 0.001935 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.293963 B =14465.433764 C =14899.989731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.138 3.862 3 H 0.089 0.911 4 C 0.138 3.862 5 H 0.099 0.901 6 N -0.706 5.706 7 C 0.541 3.459 8 O -0.556 6.556 9 C -0.133 4.133 10 S -0.146 6.146 11 C -0.546 4.546 12 H 0.083 0.917 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.995 3.005 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.259 1.259 19 C -0.136 4.136 20 C 0.078 3.922 21 N -0.605 5.605 22 C 0.617 3.383 23 O -0.537 6.537 24 C -0.062 4.062 25 C 0.032 3.968 26 N -0.295 5.295 27 N -0.059 5.059 28 N -0.357 5.357 29 H 0.463 0.537 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.416 0.584 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 -0.616 -25.292 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.034 3.966 3 H 0.107 0.893 4 C 0.032 3.968 5 H 0.117 0.883 6 N -0.363 5.363 7 C 0.327 3.673 8 O -0.434 6.434 9 C -0.284 4.284 10 S 0.081 5.919 11 C -0.694 4.694 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.817 3.183 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.183 1.183 19 C -0.175 4.175 20 C -0.044 4.044 21 N -0.339 5.339 22 C 0.404 3.596 23 O -0.413 6.413 24 C -0.197 4.197 25 C -0.128 4.128 26 N -0.159 5.159 27 N -0.041 5.041 28 N -0.091 5.091 29 H 0.318 0.682 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.257 0.743 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.574 -1.130 -25.801 25.954 hybrid contribution -2.634 0.569 1.663 3.166 sum -0.060 -0.562 -24.139 24.145 Atomic orbital electron populations 1.22172 0.93568 1.03457 1.03827 1.21685 0.95971 0.96138 0.82788 0.89254 1.21913 0.92068 0.96715 0.86072 0.88314 1.45915 1.11098 1.75066 1.04234 1.19974 0.88948 0.74820 0.83582 1.90702 1.20361 1.49681 1.82634 1.23394 1.01258 1.06805 0.96986 1.85522 1.13768 1.96042 0.96578 1.23209 0.93699 1.58021 0.94481 0.89936 1.26085 1.00261 0.93869 0.98886 1.70174 1.24024 1.47550 1.12915 0.84994 0.77441 0.78884 0.76932 1.19377 1.20461 1.18265 1.23176 1.03720 0.96589 0.94060 1.22858 0.96605 0.88612 0.96369 1.48349 1.50633 1.30758 1.04167 1.16320 0.80897 0.82294 0.80111 1.90874 1.35975 1.31480 1.82935 1.22133 0.99536 1.00733 0.97280 1.24299 1.00046 0.99265 0.89193 1.75031 1.07058 1.08668 1.25171 1.78204 1.19581 1.19169 0.87174 1.46192 1.25606 1.26543 1.10717 0.68209 0.89831 0.91215 0.91068 0.74277 0.87142 0.87280 0.92041 0.88469 0.89091 0.88444 0.87511 0.76265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 7.92 71.98 0.57 -1.63 16 2 C 0.14 1.81 3.51 45.34 0.16 1.97 16 3 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 4 C 0.14 2.14 3.19 46.18 0.15 2.29 16 5 H 0.10 1.88 7.55 -2.39 -0.02 1.86 16 6 N -0.71 -13.65 4.89 -436.92 -2.14 -15.78 16 7 C 0.54 16.85 7.85 87.66 0.69 17.54 16 8 O -0.56 -22.20 15.51 -3.05 -0.05 -22.25 16 9 C -0.13 -4.73 6.16 71.24 0.44 -4.29 16 10 S -0.15 -7.65 20.57 -56.49 -1.16 -8.81 16 11 C -0.55 -29.97 9.50 67.95 0.65 -29.32 16 12 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 13 C 0.01 0.77 5.49 84.86 0.47 1.23 16 14 N -0.91 -54.37 13.22 21.65 0.29 -54.08 16 15 Si 1.00 42.34 29.55 68.60 2.03 44.37 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 18 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 19 C -0.14 -1.48 6.77 31.98 0.22 -1.26 16 20 C 0.08 0.47 5.29 86.85 0.46 0.93 16 21 N -0.61 -6.85 3.08 -792.12 -2.44 -9.29 16 22 C 0.62 9.33 7.65 86.61 0.66 9.99 16 23 O -0.54 -11.47 15.66 -4.10 -0.06 -11.53 16 24 C -0.06 -0.82 6.90 40.41 0.28 -0.54 16 25 C 0.03 0.48 11.87 84.18 1.00 1.48 16 26 N -0.30 -5.46 12.35 -57.50 -0.71 -6.17 16 27 N -0.06 -0.96 13.35 37.02 0.49 -0.47 16 28 N -0.36 -3.64 6.36 -48.52 -0.31 -3.94 16 29 H 0.46 1.60 5.56 -219.91 -1.22 0.38 16 30 H 0.08 0.93 6.76 -2.39 -0.02 0.92 16 31 H 0.07 1.14 6.61 -2.39 -0.02 1.13 16 32 H 0.07 0.80 8.03 -2.39 -0.02 0.78 16 33 H 0.42 5.92 5.86 -92.71 -0.54 5.37 16 34 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.11 3.49 8.14 -2.40 -0.02 3.47 16 36 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.10 0.21 6.24 -2.39 -0.01 0.20 16 40 H 0.11 0.21 7.89 -2.39 -0.02 0.19 16 41 H 0.22 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -79.55 357.35 1.01 -78.54 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -0.66 Total: 11.05 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 5.73 Total: -1.62 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -4.81 Total: -89.73 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.11 Total: -33.78 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -7.65 SS G_CDS: -1.16 Total: -8.81 kcal Total: -79.55 1.01 -78.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488143622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.589 kcal (2) G-P(sol) polarization free energy of solvation -79.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds