Wall clock time and date at job start Tue Mar 31 2020 23:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.99590 * 2 1 4 4 C 1.54321 * 109.88198 * 238.90855 * 2 1 3 5 5 H 1.09006 * 110.72181 * 144.23233 * 4 2 1 6 6 N 1.46501 * 110.72507 * 21.13977 * 4 2 1 7 7 C 1.34768 * 120.00585 * 154.99958 * 6 4 2 8 8 O 1.21281 * 119.99825 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00120 * 180.02562 * 7 6 4 10 10 S 1.81003 * 109.47183 * 180.02562 * 9 7 6 11 11 C 1.76197 * 100.00108 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00123 * 359.97438 * 11 10 9 13 13 C 1.38797 * 120.00090 * 180.02562 * 11 10 9 14 14 N 1.31629 * 120.00263 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99921 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47385 * 90.00353 * 15 13 11 17 17 H 1.48503 * 109.47265 * 210.00280 * 15 13 11 18 18 H 1.48494 * 109.47348 * 330.00019 * 15 13 11 19 19 C 1.55438 * 102.97013 * 262.76923 * 4 2 1 20 20 C 1.54906 * 101.45444 * 324.52267 * 19 4 2 21 21 N 1.47020 * 109.88493 * 121.09889 * 2 1 3 22 22 C 1.34777 * 125.64573 * 300.46015 * 21 2 1 23 23 O 1.21620 * 120.00239 * 357.55105 * 22 21 2 24 24 C 1.47240 * 119.99594 * 177.55931 * 22 21 2 25 25 C 1.37004 * 127.18324 * 187.32189 * 24 22 21 26 26 N 1.33329 * 106.36860 * 179.90194 * 25 24 22 27 27 N 1.28515 * 109.43807 * 0.36828 * 26 25 24 28 28 N 1.28720 * 110.63966 * 359.76592 * 27 26 25 29 29 H 0.96990 * 126.03587 * 179.97438 * 28 27 26 30 30 H 1.08995 * 109.47253 * 300.35377 * 1 2 3 31 31 H 1.08998 * 109.47633 * 60.35827 * 1 2 3 32 32 H 1.09006 * 109.46888 * 180.34975 * 1 2 3 33 33 H 0.97008 * 119.99230 * 334.99524 * 6 4 2 34 34 H 1.08999 * 109.47120 * 299.99183 * 9 7 6 35 35 H 1.09000 * 109.47583 * 59.99736 * 9 7 6 36 36 H 0.97002 * 120.00667 * 179.97438 * 14 13 11 37 37 H 1.09001 * 111.11897 * 206.45939 * 19 4 2 38 38 H 1.09004 * 111.01331 * 82.52857 * 19 4 2 39 39 H 1.09000 * 110.36107 * 278.10668 * 20 19 4 40 40 H 1.09000 * 110.36990 * 155.89711 * 20 19 4 41 41 H 1.07994 * 126.82038 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2427 5 1 2.9639 -0.2811 -1.6202 6 7 1.0293 -0.8025 -2.2876 7 6 1.3896 -0.9364 -3.5793 8 8 2.5628 -1.0125 -3.8769 9 6 0.3346 -0.9903 -4.6541 10 16 1.1287 -1.1732 -6.2704 11 6 -0.2947 -1.2088 -7.3083 12 1 -1.2808 -1.1276 -6.8756 13 6 -0.1486 -1.3425 -8.6821 14 7 -1.2119 -1.3696 -9.4575 15 14 1.5570 -1.4838 -9.4307 16 1 1.9502 -2.9141 -9.4999 17 1 1.5465 -0.9065 -10.7989 18 1 2.5301 -0.7430 -8.5884 19 6 2.3528 -2.1722 -0.6922 20 6 2.8569 -1.8498 0.7366 21 7 2.0301 -0.7141 1.1838 22 6 1.7751 -0.3848 2.4656 23 8 1.1133 0.6036 2.7195 24 6 2.2979 -1.2214 3.5586 25 6 2.0176 -1.1082 4.8949 26 7 2.7077 -2.0711 5.5065 27 7 3.3778 -2.7367 4.6349 28 7 3.1710 -2.2723 3.4524 29 1 3.5641 -2.6068 2.6312 30 1 -0.3633 0.5193 0.8867 31 1 -0.3634 0.5082 -0.8931 32 1 -0.3633 -1.0277 0.0063 33 1 0.0909 -0.7412 -2.0496 34 1 -0.3235 -1.8406 -4.4749 35 1 -0.2486 -0.0696 -4.6375 36 1 -1.1099 -1.4626 -10.4177 37 1 3.1282 -2.6656 -1.2781 38 1 1.4461 -2.7764 -0.6595 39 1 3.9092 -1.5667 0.7127 40 1 2.7104 -2.7074 1.3932 41 1 1.3654 -0.3841 5.3602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488143623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:59 Heat of formation + Delta-G solvation = 49.144027 kcal Electronic energy + Delta-G solvation = -26377.878785 eV Core-core repulsion = 22422.312572 eV Total energy + Delta-G solvation = -3955.566213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.94981 -41.09291 -39.48112 -37.99762 -35.02246 -33.92832 -32.51005 -32.25497 -31.85383 -31.01822 -29.10857 -26.42118 -25.67866 -25.40811 -23.61912 -23.13438 -21.98267 -21.00249 -20.11911 -18.79701 -18.14103 -17.51320 -17.19550 -16.80842 -16.57956 -16.35790 -15.68905 -15.19861 -15.03357 -14.91872 -14.88106 -14.33199 -13.92581 -13.82594 -13.60977 -13.29903 -12.93706 -12.87073 -12.77088 -12.68184 -12.38869 -12.13745 -11.81700 -11.55183 -11.39400 -11.34044 -11.28337 -11.07552 -10.76765 -10.67703 -10.11789 -9.93968 -9.73327 -9.49023 -9.25559 -9.07011 -8.60090 -7.00922 -6.35595 -4.08513 0.30104 1.73849 1.75520 2.06461 2.43437 2.64372 2.73526 3.16594 3.26999 3.43493 3.44007 3.52617 3.74336 3.82539 4.10310 4.25963 4.28593 4.38485 4.43871 4.54270 4.55101 4.61285 4.63832 4.84260 4.95891 5.03350 5.04059 5.18783 5.40401 5.41704 5.47056 5.51906 5.58900 5.63562 5.83476 5.89104 5.96229 6.26614 6.60291 7.27676 7.35367 7.69763 7.87180 8.26139 8.34842 9.10153 10.73529 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.002017 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.830544 B =13879.587908 C =14321.283260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.132 3.868 3 H 0.094 0.906 4 C 0.142 3.858 5 H 0.112 0.888 6 N -0.730 5.730 7 C 0.534 3.466 8 O -0.515 6.515 9 C -0.126 4.126 10 S -0.140 6.140 11 C -0.523 4.523 12 H 0.089 0.911 13 C 0.096 3.904 14 N -0.879 5.879 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.236 1.236 19 C -0.142 4.142 20 C 0.080 3.920 21 N -0.610 5.610 22 C 0.613 3.387 23 O -0.506 6.506 24 C -0.064 4.064 25 C 0.036 3.964 26 N -0.268 5.268 27 N -0.047 5.047 28 N -0.379 5.379 29 H 0.450 0.550 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.404 0.596 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.271 0.729 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.466 -0.396 25.229 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.029 3.971 3 H 0.112 0.888 4 C 0.035 3.965 5 H 0.130 0.870 6 N -0.387 5.387 7 C 0.320 3.680 8 O -0.389 6.389 9 C -0.276 4.276 10 S 0.086 5.914 11 C -0.671 4.671 12 H 0.107 0.893 13 C -0.113 4.113 14 N -0.515 5.515 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.160 1.160 19 C -0.181 4.181 20 C -0.043 4.043 21 N -0.345 5.345 22 C 0.399 3.601 23 O -0.379 6.379 24 C -0.198 4.198 25 C -0.124 4.124 26 N -0.133 5.133 27 N -0.029 5.029 28 N -0.112 5.112 29 H 0.304 0.696 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.242 0.758 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.630 -0.959 25.679 27.107 hybrid contribution -1.552 0.429 -1.275 2.054 sum 7.078 -0.530 24.404 25.415 Atomic orbital electron populations 1.22195 0.93908 1.03051 1.04145 1.21782 0.95687 0.96562 0.83041 0.88831 1.21874 0.93153 0.94935 0.86530 0.87019 1.46166 1.09905 1.77001 1.05620 1.20359 0.90228 0.74838 0.82539 1.90705 1.18967 1.47412 1.81833 1.23285 1.00445 1.05957 0.97928 1.84788 1.14030 1.96502 0.96035 1.22297 0.92578 1.58406 0.93789 0.89339 1.24719 0.97385 0.93207 0.96016 1.69932 1.28907 1.47520 1.05130 0.86733 0.84901 0.80116 0.80068 1.19209 1.19894 1.15954 1.23297 1.03490 0.98173 0.93145 1.22684 0.96085 0.88422 0.97129 1.48389 1.50738 1.30506 1.04850 1.16323 0.80200 0.83805 0.79738 1.90891 1.38951 1.25609 1.82437 1.22289 1.03050 0.96635 0.97868 1.23964 1.00621 0.98944 0.88861 1.75039 1.07992 1.05867 1.24430 1.78245 1.18267 1.19556 0.86824 1.46433 1.31497 1.22294 1.11014 0.69627 0.90148 0.90348 0.91786 0.75756 0.88383 0.88281 0.91873 0.88133 0.89452 0.89568 0.91004 0.77727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 7.93 37.16 0.29 -0.92 16 2 C 0.13 0.94 3.47 -66.96 -0.23 0.71 16 3 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.14 1.13 3.20 -65.94 -0.21 0.92 16 5 H 0.11 1.04 7.55 -51.93 -0.39 0.65 16 6 N -0.73 -7.18 4.90 -51.88 -0.25 -7.43 16 7 C 0.53 8.02 7.85 -10.99 -0.09 7.93 16 8 O -0.52 -9.57 15.51 5.56 0.09 -9.48 16 9 C -0.13 -2.18 6.16 36.01 0.22 -1.96 16 10 S -0.14 -3.33 18.55 -107.50 -1.99 -5.32 16 11 C -0.52 -14.48 10.04 30.94 0.31 -14.17 16 12 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 13 C 0.10 2.71 5.50 -17.43 -0.10 2.62 16 14 N -0.88 -25.83 13.97 55.49 0.78 -25.06 16 15 Si 0.86 21.06 27.74 -169.99 -4.71 16.34 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.24 -5.75 6.74 56.52 0.38 -5.37 16 19 C -0.14 -0.85 6.79 -24.43 -0.17 -1.01 16 20 C 0.08 0.33 5.55 -2.53 -0.01 0.31 16 21 N -0.61 -3.95 3.08 -164.35 -0.51 -4.45 16 22 C 0.61 5.06 7.60 -12.60 -0.10 4.97 16 23 O -0.51 -5.62 15.92 5.26 0.08 -5.54 16 24 C -0.06 -0.48 6.93 -82.33 -0.57 -1.05 16 25 C 0.04 0.28 11.87 -17.35 -0.21 0.08 16 26 N -0.27 -2.60 12.35 30.47 0.38 -2.22 16 27 N -0.05 -0.41 13.35 60.35 0.81 0.40 16 28 N -0.38 -2.30 6.38 33.31 0.21 -2.08 16 29 H 0.45 1.35 5.38 -190.34 -1.02 0.32 16 30 H 0.08 0.68 6.82 -51.93 -0.35 0.32 16 31 H 0.08 0.49 6.82 -51.93 -0.35 0.14 16 32 H 0.06 0.41 8.01 -51.93 -0.42 -0.01 16 33 H 0.40 3.14 5.87 -40.82 -0.24 2.90 16 34 H 0.10 1.57 8.14 -51.92 -0.42 1.15 16 35 H 0.10 1.60 8.14 -51.92 -0.42 1.17 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.07 0.17 5.49 -51.93 -0.29 -0.11 16 41 H 0.21 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -35.50 354.73 -6.23 -41.74 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.60 Total: -0.66 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.85 Total: -1.57 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 1.41 Total: -40.86 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.17 Total: -15.02 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.71 Total: 16.34 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.99 Total: -5.32 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.50 -6.23 -41.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488143623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.881 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds