Wall clock time and date at job start Tue Mar 31 2020 23:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.99590 * 2 1 4 4 C 1.54321 * 109.88198 * 238.90855 * 2 1 3 5 5 H 1.09006 * 110.72181 * 144.23233 * 4 2 1 6 6 N 1.46501 * 110.72507 * 21.13977 * 4 2 1 7 7 C 1.34768 * 120.00585 * 154.99958 * 6 4 2 8 8 O 1.21281 * 119.99825 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00120 * 180.02562 * 7 6 4 10 10 S 1.81003 * 109.47183 * 180.02562 * 9 7 6 11 11 C 1.76197 * 100.00108 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00123 * 359.97438 * 11 10 9 13 13 C 1.38797 * 120.00090 * 180.02562 * 11 10 9 14 14 N 1.31629 * 120.00263 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99921 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47385 * 90.00353 * 15 13 11 17 17 H 1.48503 * 109.47265 * 210.00280 * 15 13 11 18 18 H 1.48494 * 109.47348 * 330.00019 * 15 13 11 19 19 C 1.55438 * 102.97013 * 262.76923 * 4 2 1 20 20 C 1.54906 * 101.45444 * 324.52267 * 19 4 2 21 21 N 1.47020 * 109.88493 * 121.09889 * 2 1 3 22 22 C 1.34777 * 125.64573 * 300.46015 * 21 2 1 23 23 O 1.21620 * 120.00239 * 357.55105 * 22 21 2 24 24 C 1.47240 * 119.99594 * 177.55931 * 22 21 2 25 25 C 1.37004 * 127.18324 * 187.32189 * 24 22 21 26 26 N 1.33329 * 106.36860 * 179.90194 * 25 24 22 27 27 N 1.28515 * 109.43807 * 0.36828 * 26 25 24 28 28 N 1.28720 * 110.63966 * 359.76592 * 27 26 25 29 29 H 0.96990 * 126.03587 * 179.97438 * 28 27 26 30 30 H 1.08995 * 109.47253 * 300.35377 * 1 2 3 31 31 H 1.08998 * 109.47633 * 60.35827 * 1 2 3 32 32 H 1.09006 * 109.46888 * 180.34975 * 1 2 3 33 33 H 0.97008 * 119.99230 * 334.99524 * 6 4 2 34 34 H 1.08999 * 109.47120 * 299.99183 * 9 7 6 35 35 H 1.09000 * 109.47583 * 59.99736 * 9 7 6 36 36 H 0.97002 * 120.00667 * 179.97438 * 14 13 11 37 37 H 1.09001 * 111.11897 * 206.45939 * 19 4 2 38 38 H 1.09004 * 111.01331 * 82.52857 * 19 4 2 39 39 H 1.09000 * 110.36107 * 278.10668 * 20 19 4 40 40 H 1.09000 * 110.36990 * 155.89711 * 20 19 4 41 41 H 1.07994 * 126.82038 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2427 5 1 2.9639 -0.2811 -1.6202 6 7 1.0293 -0.8025 -2.2876 7 6 1.3896 -0.9364 -3.5793 8 8 2.5628 -1.0125 -3.8769 9 6 0.3346 -0.9903 -4.6541 10 16 1.1287 -1.1732 -6.2704 11 6 -0.2947 -1.2088 -7.3083 12 1 -1.2808 -1.1276 -6.8756 13 6 -0.1486 -1.3425 -8.6821 14 7 -1.2119 -1.3696 -9.4575 15 14 1.5570 -1.4838 -9.4307 16 1 1.9502 -2.9141 -9.4999 17 1 1.5465 -0.9065 -10.7989 18 1 2.5301 -0.7430 -8.5884 19 6 2.3528 -2.1722 -0.6922 20 6 2.8569 -1.8498 0.7366 21 7 2.0301 -0.7141 1.1838 22 6 1.7751 -0.3848 2.4656 23 8 1.1133 0.6036 2.7195 24 6 2.2979 -1.2214 3.5586 25 6 2.0176 -1.1082 4.8949 26 7 2.7077 -2.0711 5.5065 27 7 3.3778 -2.7367 4.6349 28 7 3.1710 -2.2723 3.4524 29 1 3.5641 -2.6068 2.6312 30 1 -0.3633 0.5193 0.8867 31 1 -0.3634 0.5082 -0.8931 32 1 -0.3633 -1.0277 0.0063 33 1 0.0909 -0.7412 -2.0496 34 1 -0.3235 -1.8406 -4.4749 35 1 -0.2486 -0.0696 -4.6375 36 1 -1.1099 -1.4626 -10.4177 37 1 3.1282 -2.6656 -1.2781 38 1 1.4461 -2.7764 -0.6595 39 1 3.9092 -1.5667 0.7127 40 1 2.7104 -2.7074 1.3932 41 1 1.3654 -0.3841 5.3602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488143623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:59 Heat of formation + Delta-G solvation = 21.715958 kcal Electronic energy + Delta-G solvation = -26379.068156 eV Core-core repulsion = 22422.312572 eV Total energy + Delta-G solvation = -3956.755583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.54400 -41.77565 -40.48416 -38.79667 -35.82116 -34.67360 -34.62399 -32.94331 -32.41805 -31.86819 -30.21624 -27.86133 -27.00269 -26.02439 -24.25867 -23.66837 -22.72851 -21.84911 -20.87995 -19.95318 -19.33900 -18.33005 -17.99170 -17.67417 -17.34929 -17.14967 -17.04002 -16.53089 -16.38379 -15.74886 -15.48384 -15.36626 -15.01331 -14.90177 -14.80666 -14.33603 -13.97109 -13.69949 -13.44819 -13.33891 -13.29673 -13.22786 -13.00866 -12.87680 -12.64965 -12.42472 -12.17255 -11.98008 -11.86743 -11.85122 -11.42326 -11.16115 -11.02660 -10.73830 -10.52323 -10.21782 -10.00061 -8.97537 -8.50472 -6.20907 -0.28971 0.98466 1.10965 1.20208 1.32451 1.45848 1.51603 1.54156 1.63446 1.82956 2.22643 2.26654 2.72057 2.87947 2.90771 3.20012 3.29926 3.52638 3.76899 3.81812 3.88682 3.92536 4.00254 4.04257 4.17489 4.24700 4.31119 4.41633 4.49666 4.55736 4.83817 4.86660 4.91139 4.96640 5.02805 5.25045 5.37951 5.52597 5.71475 6.03677 6.12941 6.38446 6.66722 6.94738 7.09026 7.14588 8.61752 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.002017 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.830544 B =13879.587908 C =14321.283260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.137 3.863 3 H 0.090 0.910 4 C 0.140 3.860 5 H 0.102 0.898 6 N -0.706 5.706 7 C 0.542 3.458 8 O -0.553 6.553 9 C -0.115 4.115 10 S -0.171 6.171 11 C -0.529 4.529 12 H 0.062 0.938 13 C 0.043 3.957 14 N -0.918 5.918 15 Si 0.915 3.085 16 H -0.262 1.262 17 H -0.263 1.263 18 H -0.234 1.234 19 C -0.137 4.137 20 C 0.079 3.921 21 N -0.605 5.605 22 C 0.617 3.383 23 O -0.539 6.539 24 C -0.062 4.062 25 C 0.031 3.969 26 N -0.295 5.295 27 N -0.060 5.060 28 N -0.358 5.358 29 H 0.463 0.537 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.417 0.583 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.276 0.724 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.553 -0.902 26.432 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.033 3.967 3 H 0.108 0.892 4 C 0.034 3.966 5 H 0.120 0.880 6 N -0.362 5.362 7 C 0.328 3.672 8 O -0.431 6.431 9 C -0.266 4.266 10 S 0.055 5.945 11 C -0.677 4.677 12 H 0.080 0.920 13 C -0.162 4.162 14 N -0.556 5.556 15 Si 0.737 3.263 16 H -0.187 1.187 17 H -0.187 1.187 18 H -0.158 1.158 19 C -0.176 4.176 20 C -0.043 4.043 21 N -0.339 5.339 22 C 0.403 3.597 23 O -0.414 6.414 24 C -0.197 4.197 25 C -0.129 4.129 26 N -0.159 5.159 27 N -0.042 5.042 28 N -0.094 5.094 29 H 0.319 0.681 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.258 0.742 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 9.713 -1.491 26.909 28.647 hybrid contribution -1.971 0.606 -1.521 2.562 sum 7.743 -0.886 25.387 26.557 Atomic orbital electron populations 1.22168 0.93624 1.03487 1.03839 1.21679 0.95848 0.96295 0.82829 0.89249 1.21974 0.92041 0.96691 0.85939 0.87986 1.45900 1.11213 1.74880 1.04246 1.19855 0.88823 0.74972 0.83536 1.90701 1.20047 1.49733 1.82574 1.23291 1.01050 1.07449 0.94809 1.84664 1.13410 1.96689 0.99704 1.22480 0.93036 1.57479 0.94689 0.91980 1.25592 1.00896 0.93062 0.96655 1.70019 1.30955 1.48898 1.05697 0.85853 0.80535 0.80311 0.79584 1.18675 1.18701 1.15814 1.23244 1.03831 0.96543 0.93956 1.22884 0.96839 0.88342 0.96241 1.48357 1.50489 1.30830 1.04179 1.16323 0.79783 0.83410 0.80141 1.90882 1.40524 1.27035 1.82951 1.22140 1.03272 0.96809 0.97447 1.24301 1.00516 0.98822 0.89226 1.75029 1.08906 1.06746 1.25235 1.78197 1.18586 1.19917 0.87495 1.46395 1.30557 1.21401 1.11000 0.68051 0.91500 0.89664 0.90932 0.74238 0.86770 0.86865 0.91444 0.88136 0.89033 0.87261 0.88918 0.76306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 7.93 71.98 0.57 -1.47 16 2 C 0.14 1.65 3.47 45.34 0.16 1.81 16 3 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.14 1.89 3.20 46.28 0.15 2.03 16 5 H 0.10 1.69 7.55 -2.38 -0.02 1.68 16 6 N -0.71 -12.17 4.90 -436.46 -2.14 -14.31 16 7 C 0.54 15.27 7.85 87.66 0.69 15.96 16 8 O -0.55 -19.79 15.51 -3.03 -0.05 -19.84 16 9 C -0.12 -3.82 6.16 71.24 0.44 -3.38 16 10 S -0.17 -8.05 18.55 -56.49 -1.05 -9.10 16 11 C -0.53 -29.56 10.04 67.95 0.68 -28.88 16 12 H 0.06 3.67 8.03 -2.91 -0.02 3.64 16 13 C 0.04 2.46 5.50 84.86 0.47 2.93 16 14 N -0.92 -54.64 13.97 21.65 0.30 -54.34 16 15 Si 0.92 43.44 27.74 68.60 1.90 45.34 16 16 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.23 -10.99 6.74 99.48 0.67 -10.32 16 19 C -0.14 -1.22 6.79 32.08 0.22 -1.00 16 20 C 0.08 0.38 5.55 86.85 0.48 0.86 16 21 N -0.60 -6.33 3.08 -792.12 -2.44 -8.77 16 22 C 0.62 9.03 7.60 86.61 0.66 9.69 16 23 O -0.54 -11.38 15.92 -4.09 -0.07 -11.44 16 24 C -0.06 -0.80 6.93 40.41 0.28 -0.52 16 25 C 0.03 0.46 11.87 84.18 1.00 1.46 16 26 N -0.29 -5.38 12.35 -57.50 -0.71 -6.09 16 27 N -0.06 -0.95 13.35 37.02 0.49 -0.46 16 28 N -0.36 -3.48 6.38 -48.52 -0.31 -3.79 16 29 H 0.46 1.31 5.38 -219.91 -1.18 0.13 16 30 H 0.07 1.04 6.82 -2.39 -0.02 1.02 16 31 H 0.08 0.87 6.82 -2.39 -0.02 0.85 16 32 H 0.07 0.73 8.01 -2.38 -0.02 0.71 16 33 H 0.42 5.27 5.87 -92.70 -0.54 4.72 16 34 H 0.11 3.44 8.14 -2.40 -0.02 3.42 16 35 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.11 0.11 8.14 -2.39 -0.02 0.10 16 40 H 0.09 0.09 5.49 -2.39 -0.01 0.08 16 41 H 0.22 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -77.73 354.73 1.07 -76.66 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -0.66 Total: 6.64 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 5.79 Total: -0.51 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -4.80 Total: -87.75 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.11 Total: -31.28 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.90 Total: 45.34 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.05 Total: -9.10 kcal Total: -77.73 1.07 -76.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488143623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.374 kcal (2) G-P(sol) polarization free energy of solvation -77.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds