Wall clock time and date at job start Tue Mar 31 2020 22:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 120.00266 * 2 1 4 4 H 1.48501 * 109.46949 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47185 * 299.99865 * 3 2 1 6 6 H 1.48504 * 109.47022 * 59.99709 * 3 2 1 7 7 C 1.38944 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00043 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00237 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99727 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00243 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99682 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47276 * 179.97438 * 12 10 9 14 14 C 1.46899 * 111.00287 * 179.97438 * 13 12 10 15 15 H 1.08999 * 112.90661 * 336.25759 * 14 13 12 16 16 C 1.53781 * 113.61474 * 107.50463 * 14 13 12 17 17 C 1.54049 * 87.08031 * 139.97870 * 16 14 13 18 18 H 1.09000 * 113.61076 * 89.06984 * 17 16 14 19 19 C 1.52990 * 113.70090 * 220.05426 * 17 16 14 20 20 N 1.46497 * 109.47171 * 272.42414 * 19 17 16 21 21 C 1.34777 * 120.00242 * 179.97438 * 20 19 17 22 22 O 1.21601 * 119.99838 * 0.02562 * 21 20 19 23 23 C 1.47450 * 120.00119 * 179.97438 * 21 20 19 24 24 C 1.37982 * 124.15385 * 180.02562 * 23 21 20 25 25 S 1.72108 * 104.03164 * 180.02562 * 24 23 21 26 26 N 1.56408 * 96.15445 * 0.02562 * 25 24 23 27 27 N 1.27416 * 109.87150 * 359.72569 * 26 25 24 28 28 C 1.53781 * 113.61699 * 205.00285 * 14 13 12 29 29 H 0.97003 * 119.99748 * 0.02562 * 1 2 3 30 30 H 0.96991 * 119.99978 * 0.02562 * 9 7 2 31 31 H 1.09010 * 109.47264 * 59.99560 * 12 10 9 32 32 H 1.09002 * 109.47126 * 300.00339 * 12 10 9 33 33 H 1.00905 * 111.00118 * 56.04967 * 13 12 10 34 34 H 1.09005 * 113.61471 * 254.53452 * 16 14 13 35 35 H 1.08996 * 113.61178 * 25.34795 * 16 14 13 36 36 H 1.09007 * 109.47036 * 32.41747 * 19 17 16 37 37 H 1.08994 * 109.47734 * 152.42153 * 19 17 16 38 38 H 0.97003 * 120.00176 * 359.97438 * 20 19 17 39 39 H 1.07994 * 127.98420 * 0.03954 * 24 23 21 40 40 H 1.09002 * 113.61445 * 334.56913 * 28 14 13 41 41 H 1.09002 * 113.61408 * 105.38644 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3232 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0030 12 6 1.2436 -4.8629 0.0010 13 7 2.1981 -5.9795 0.0017 14 6 1.4978 -7.2708 0.0018 15 1 0.4875 -7.2055 0.4056 16 6 1.5773 -8.0148 -1.3417 17 6 1.7629 -9.3077 -0.5250 18 1 0.8249 -9.7982 -0.2649 19 6 2.7925 -10.2694 -1.1215 20 7 2.1353 -11.1474 -2.0927 21 6 2.8513 -12.0818 -2.7490 22 8 4.0427 -12.1964 -2.5345 23 6 2.1897 -12.9659 -3.7261 24 6 2.8383 -13.9496 -4.4442 25 16 1.5968 -14.6488 -5.4096 26 7 0.4422 -13.7317 -4.8879 27 7 0.8954 -12.9161 -4.0202 28 6 2.3264 -8.4210 0.5980 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 -0.0002 31 1 0.6179 -4.9209 -0.8897 32 1 0.6159 -4.9204 0.8902 33 1 2.8324 -5.9125 0.7837 34 1 0.6484 -7.9876 -1.9115 35 1 2.4482 -7.7453 -1.9391 36 1 3.5765 -9.6990 -1.6197 37 1 3.2310 -10.8716 -0.3258 38 1 1.1848 -11.0563 -2.2636 39 1 3.8835 -14.2187 -4.4086 40 1 3.4029 -8.2637 0.5316 41 1 2.0032 -8.7208 1.5949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488761776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:10 Heat of formation + Delta-G solvation = 21.602469 kcal Electronic energy + Delta-G solvation = -25029.609613 eV Core-core repulsion = 21072.849108 eV Total energy + Delta-G solvation = -3956.760505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57467 -39.95097 -39.08953 -38.03054 -35.23535 -34.05726 -33.25013 -32.63464 -31.18966 -28.79697 -27.43327 -26.37162 -25.73838 -24.29865 -23.60020 -21.57638 -21.32924 -20.05587 -19.43837 -18.99147 -17.85836 -17.39765 -16.57832 -16.43444 -16.22808 -15.91924 -15.57782 -15.30599 -15.11857 -14.56439 -14.33143 -14.29874 -13.81665 -13.61694 -13.37841 -13.14838 -12.61371 -12.55005 -12.41777 -12.27480 -11.64578 -11.52653 -11.51151 -11.07244 -11.01731 -10.92467 -10.78926 -10.62484 -10.47046 -10.46795 -10.35785 -10.33114 -10.20570 -9.50915 -9.43598 -8.42750 -8.05197 -7.94494 -6.40721 -3.81438 -0.47967 0.37266 0.93703 0.99173 2.66676 2.70772 3.17249 3.27712 3.31946 3.35205 3.92535 4.11133 4.14449 4.29173 4.35310 4.41326 4.56642 4.71853 4.76301 4.81798 5.02148 5.21756 5.24898 5.28685 5.44861 5.59716 5.66422 5.78876 5.82188 5.91706 5.94867 6.01576 6.18423 6.23899 6.38746 6.83187 7.13044 7.30913 7.56518 7.67255 7.69140 8.07994 8.62631 9.19235 9.55831 10.07316 10.77132 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.001491 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.955397 B =18773.953694 C =19145.645337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.656 5.656 14 C 0.059 3.941 15 H 0.072 0.928 16 C -0.121 4.121 17 C -0.127 4.127 18 H 0.096 0.904 19 C 0.130 3.870 20 N -0.705 5.705 21 C 0.602 3.398 22 O -0.525 6.525 23 C -0.023 4.023 24 C -0.236 4.236 25 S 0.465 5.535 26 N -0.288 5.288 27 N -0.211 5.211 28 C -0.130 4.130 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.350 0.650 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.411 0.589 39 H 0.209 0.791 40 H 0.094 0.906 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -31.371 -7.010 32.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.083 4.083 13 N -0.288 5.288 14 C -0.052 4.052 15 H 0.089 0.911 16 C -0.160 4.160 17 C -0.146 4.146 18 H 0.114 0.886 19 C 0.007 3.993 20 N -0.356 5.356 21 C 0.383 3.617 22 O -0.400 6.400 23 C -0.170 4.170 24 C -0.393 4.393 25 S 0.600 5.400 26 N -0.269 5.269 27 N -0.082 5.082 28 C -0.169 4.169 29 H 0.080 0.920 30 H 0.225 0.775 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.171 0.829 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.247 0.753 39 H 0.226 0.774 40 H 0.113 0.887 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.661 -31.676 -8.347 32.764 hybrid contribution 0.062 1.485 1.611 2.192 sum -0.599 -30.191 -6.736 30.939 Atomic orbital electron populations 1.69623 1.05938 1.28020 1.50776 1.25263 0.95638 0.99723 0.97370 0.85798 0.79719 0.81132 0.77680 1.19216 1.20754 1.20789 1.19763 0.93414 0.82255 1.47406 0.87866 1.41877 1.09196 1.04632 1.64431 1.19847 0.88398 0.84764 0.84373 1.90522 1.13778 1.87089 1.55359 1.21735 0.94438 0.91053 1.01072 1.60237 1.18360 0.99472 1.50764 1.22974 0.96644 0.88495 0.97039 0.91050 1.23255 1.02822 0.93169 0.96730 1.22708 0.98853 0.94642 0.98393 0.88576 1.21524 0.95385 0.91327 0.91015 1.45859 1.13449 1.34498 1.41792 1.16633 0.85764 0.79717 0.79574 1.90863 1.13885 1.70289 1.64967 1.22707 0.89718 1.01113 1.03456 1.28922 1.09279 0.99972 1.01171 1.81623 0.92770 1.32234 1.33333 1.78661 1.25622 1.09266 1.13351 1.71528 1.11351 1.16297 1.08982 1.23190 1.01260 0.95119 0.97318 0.91951 0.77478 0.89678 0.93902 0.82923 0.91692 0.88821 0.90353 0.90912 0.75294 0.77355 0.88749 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 9 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 10 C 0.44 10.49 7.82 -10.98 -0.09 10.40 16 11 O -0.58 -15.98 15.78 5.55 0.09 -15.89 16 12 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 13 N -0.66 -10.39 6.18 -107.13 -0.66 -11.05 16 14 C 0.06 0.68 4.14 -66.90 -0.28 0.41 16 15 H 0.07 0.78 7.87 -51.93 -0.41 0.38 16 16 C -0.12 -1.27 7.44 -25.78 -0.19 -1.46 16 17 C -0.13 -1.03 3.76 -89.67 -0.34 -1.37 16 18 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 19 C 0.13 1.14 5.52 -4.05 -0.02 1.12 16 20 N -0.71 -6.15 5.55 -61.38 -0.34 -6.49 16 21 C 0.60 6.18 7.81 -12.51 -0.10 6.08 16 22 O -0.52 -6.79 16.80 5.28 0.09 -6.70 16 23 C -0.02 -0.20 6.87 -83.78 -0.58 -0.77 16 24 C -0.24 -1.37 11.21 30.64 0.34 -1.03 16 25 S 0.46 2.03 23.38 -107.50 -2.51 -0.48 16 26 N -0.29 -2.40 12.49 60.35 0.75 -1.65 16 27 N -0.21 -1.96 11.24 32.74 0.37 -1.59 16 28 C -0.13 -1.21 7.20 -25.92 -0.19 -1.39 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 31 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 32 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.35 5.72 8.24 -39.29 -0.32 5.40 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.14 7.91 -51.93 -0.41 0.73 16 36 H 0.08 0.79 7.85 -51.93 -0.41 0.38 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.41 3.09 8.06 -40.82 -0.33 2.76 16 39 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -34.41 371.89 -7.77 -42.17 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.09 Total: 13.62 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.70 Total: 4.75 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.78 Total: -59.25 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.18 Total: -22.60 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.51 Total: -0.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.41 -7.77 -42.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488761776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.775 kcal (2) G-P(sol) polarization free energy of solvation -34.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds