Wall clock time and date at job start Tue Mar 31 2020 22:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48495 * 109.47541 * 269.99992 * 3 2 1 5 5 H 1.48498 * 109.47033 * 30.00033 * 3 2 1 6 6 H 1.48500 * 109.47018 * 149.99974 * 3 2 1 7 7 C 1.38949 * 120.00443 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00262 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99641 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99833 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00478 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99918 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47009 * 186.26948 * 12 10 9 14 14 C 1.46848 * 110.99591 * 190.60195 * 13 12 10 15 15 C 1.53037 * 109.51927 * 174.15516 * 14 13 12 16 16 C 1.53112 * 109.27859 * 59.18013 * 15 14 13 17 17 C 1.53122 * 109.16125 * 302.34457 * 16 15 14 18 18 H 1.09006 * 109.53094 * 297.68962 * 17 16 15 19 19 N 1.46500 * 109.50324 * 177.59481 * 17 16 15 20 20 C 1.34783 * 120.00187 * 84.92037 * 19 17 16 21 21 O 1.21567 * 119.99434 * 0.27712 * 20 19 17 22 22 C 1.47753 * 120.00282 * 180.27266 * 20 19 17 23 23 C 1.39350 * 124.11529 * 179.97438 * 22 20 19 24 24 N 1.30092 * 112.14191 * 179.97438 * 23 22 20 25 25 S 1.55919 * 108.75407 * 359.97438 * 24 23 22 26 26 N 1.31485 * 124.11091 * 359.69996 * 22 20 19 27 27 C 1.46844 * 111.00259 * 66.38736 * 13 12 10 28 28 H 0.97000 * 120.00270 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99831 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47022 * 66.26494 * 12 10 9 31 31 H 1.09001 * 109.46776 * 306.26608 * 12 10 9 32 32 H 1.08999 * 109.46000 * 294.17068 * 14 13 12 33 33 H 1.08999 * 109.46258 * 54.14619 * 14 13 12 34 34 H 1.09007 * 109.49938 * 179.11518 * 15 14 13 35 35 H 1.08996 * 109.50676 * 299.19488 * 15 14 13 36 36 H 1.09007 * 109.52660 * 182.43588 * 16 15 14 37 37 H 1.09005 * 109.52456 * 62.25070 * 16 15 14 38 38 H 0.96996 * 120.00002 * 265.18984 * 19 17 16 39 39 H 1.07998 * 123.92859 * 359.97438 * 23 22 20 40 40 H 1.09003 * 109.46081 * 65.82559 * 27 13 12 41 41 H 1.08990 * 109.45388 * 305.85176 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 7 2.1913 -5.9754 0.1492 14 6 1.5327 -7.2646 -0.0970 15 6 2.5758 -8.3842 -0.0745 16 6 3.2732 -8.3981 1.2885 17 6 3.9095 -7.0285 1.5415 18 1 4.6679 -6.8334 0.7833 19 7 4.5298 -7.0151 2.8686 20 6 5.7827 -7.4846 3.0317 21 8 6.3997 -7.9147 2.0766 22 6 6.4061 -7.4766 4.3712 23 6 7.6929 -7.9406 4.6372 24 7 8.0062 -7.8237 5.8944 25 16 6.8000 -7.1934 6.6551 26 7 5.8161 -7.0261 5.4565 27 6 2.8278 -5.9482 1.4722 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 -0.0016 30 1 0.7043 -4.9706 -0.9431 31 1 0.5354 -4.8738 0.8261 32 1 0.7884 -7.4460 0.6784 33 1 1.0443 -7.2428 -1.0712 34 1 2.0844 -9.3427 -0.2416 35 1 3.3124 -8.2111 -0.8591 36 1 4.0469 -9.1659 1.2941 37 1 2.5427 -8.6102 2.0693 38 1 4.0376 -6.6719 3.6306 39 1 8.3533 -8.3497 3.8869 40 1 2.0774 -6.1359 2.2402 41 1 3.2800 -4.9704 1.6375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490427661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:36 Heat of formation + Delta-G solvation = -31.472641 kcal Electronic energy + Delta-G solvation = -26675.199280 eV Core-core repulsion = 22716.137266 eV Total energy + Delta-G solvation = -3959.062014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.24239 -40.95049 -40.12425 -38.96279 -36.16314 -35.79967 -34.72587 -33.64346 -33.20763 -30.89930 -29.00706 -28.40601 -26.50899 -24.90852 -24.21116 -23.11903 -21.57845 -21.04237 -20.83825 -20.40788 -19.85697 -18.90555 -17.72729 -17.41367 -17.18635 -16.69908 -16.53950 -16.34929 -16.08618 -15.78501 -15.71818 -15.37894 -15.15513 -14.78480 -14.52794 -14.36795 -13.78985 -13.55886 -13.33914 -13.23444 -13.04363 -12.74303 -12.58617 -12.41538 -12.34775 -12.30674 -12.13425 -12.13213 -11.94534 -11.76780 -11.63049 -11.44150 -11.21868 -10.39382 -10.26467 -10.09570 -9.98017 -9.19974 -8.46013 -5.94092 -0.69613 0.30811 0.41388 0.60012 1.37279 1.41032 1.53210 1.83474 1.96053 2.07717 2.28771 2.81389 3.21268 3.32599 3.42805 3.58961 3.80479 3.83829 3.99421 4.06209 4.16026 4.26308 4.34306 4.44828 4.45713 4.57187 4.64673 4.68814 4.73795 4.93286 4.99486 5.07243 5.20214 5.21492 5.32268 5.41394 5.43453 5.88883 6.07421 6.23316 6.31485 6.62525 6.93135 7.14725 7.58762 8.15279 8.71438 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010567 B = 0.002773 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.148335 B =10093.595095 C =12102.411555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.989 3.011 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.330 4.330 8 H 0.076 0.924 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.615 6.615 12 C 0.061 3.939 13 N -0.534 5.534 14 C 0.052 3.948 15 C -0.108 4.108 16 C -0.120 4.120 17 C 0.157 3.843 18 H 0.067 0.933 19 N -0.696 5.696 20 C 0.605 3.395 21 O -0.552 6.552 22 C -0.006 4.006 23 C 0.089 3.911 24 N -0.598 5.598 25 S 0.801 5.199 26 N -0.566 5.566 27 C 0.059 3.941 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.414 0.586 39 H 0.225 0.775 40 H 0.049 0.951 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 -19.052 12.113 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.460 4.460 8 H 0.094 0.906 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.501 6.501 12 C -0.070 4.070 13 N -0.259 5.259 14 C -0.075 4.075 15 C -0.146 4.146 16 C -0.159 4.159 17 C 0.052 3.948 18 H 0.086 0.914 19 N -0.347 5.347 20 C 0.386 3.614 21 O -0.429 6.429 22 C -0.179 4.179 23 C -0.102 4.102 24 N -0.440 5.440 25 S 0.842 5.158 26 N -0.418 5.418 27 C -0.070 4.070 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.134 0.866 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.251 0.749 39 H 0.241 0.759 40 H 0.068 0.932 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.375 -18.667 13.094 23.426 hybrid contribution -0.607 0.901 -0.994 1.473 sum 4.768 -17.766 12.100 22.017 Atomic orbital electron populations 1.69660 1.06726 1.29213 1.50546 1.25974 0.96509 1.02226 0.96435 0.84982 0.77885 0.77188 0.78620 1.19736 1.19453 1.19971 1.19613 0.92564 0.84083 1.49742 0.90587 1.41936 1.09290 1.04655 1.65387 1.20858 0.88329 0.86004 0.82113 1.90500 1.15805 1.87816 1.55965 1.21735 0.93170 0.88129 1.04009 1.61286 1.32183 1.02844 1.29627 1.22308 0.95760 0.87085 1.02338 1.21530 0.98038 0.98701 0.96310 1.21919 1.00050 0.95091 0.98809 1.20874 0.94652 0.95886 0.83343 0.91432 1.45745 1.14711 1.62306 1.11921 1.16947 0.81360 0.77727 0.85347 1.90816 1.63348 1.48223 1.40548 1.22225 0.95195 1.06680 0.93767 1.23856 0.94729 0.98993 0.92639 1.72183 1.35633 1.24260 1.11912 1.78782 0.87203 1.35016 1.14813 1.72251 1.39197 1.23088 1.07268 1.22133 0.96066 0.98856 0.89931 0.91334 0.76998 0.86645 0.91153 0.93091 0.89092 0.88067 0.92180 0.91606 0.90294 0.74945 0.75882 0.93249 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 43.17 29.55 68.60 2.03 45.19 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 N -0.57 -29.28 5.29 -306.98 -1.62 -30.90 16 10 C 0.44 20.72 7.31 87.66 0.64 21.37 16 11 O -0.62 -34.12 14.29 -3.06 -0.04 -34.17 16 12 C 0.06 2.02 5.45 85.56 0.47 2.48 16 13 N -0.53 -16.66 4.35 -900.93 -3.92 -20.58 16 14 C 0.05 1.12 5.46 86.33 0.47 1.59 16 15 C -0.11 -2.13 6.09 30.64 0.19 -1.94 16 16 C -0.12 -2.60 5.58 30.67 0.17 -2.43 16 17 C 0.16 4.44 2.62 45.04 0.12 4.56 16 18 H 0.07 2.41 7.58 -2.38 -0.02 2.40 16 19 N -0.70 -17.95 5.08 -445.23 -2.26 -20.21 16 20 C 0.61 16.46 7.79 86.76 0.68 17.14 16 21 O -0.55 -17.96 16.47 -3.93 -0.06 -18.03 16 22 C -0.01 -0.13 6.81 41.98 0.29 0.16 16 23 C 0.09 1.72 11.22 85.22 0.96 2.68 16 24 N -0.60 -10.66 11.41 -92.47 -1.06 -11.72 16 25 S 0.80 10.80 23.69 -56.49 -1.34 9.47 16 26 N -0.57 -11.07 11.00 -80.63 -0.89 -11.96 16 27 C 0.06 1.83 4.59 86.32 0.40 2.23 16 28 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 30 H 0.12 3.33 7.98 -2.39 -0.02 3.31 16 31 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.75 8.01 -2.39 -0.02 1.73 16 34 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.41 9.42 8.19 -92.71 -0.76 8.66 16 39 H 0.22 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 2.38 6.06 -2.39 -0.01 2.36 16 Total: -1.00 -73.36 359.79 -3.62 -76.98 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.39 Total: 35.42 kcal Atomic # 6 Polarization: 24.05 SS G_CDS: 5.65 Total: 29.70 kcal Atomic # 7 Polarization: -135.11 SS G_CDS: -9.46 Total: -144.57 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -0.11 Total: -52.20 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 10.80 SS G_CDS: -1.34 Total: 9.47 kcal Total: -73.36 -3.62 -76.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490427661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.507 kcal (2) G-P(sol) polarization free energy of solvation -73.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds