Wall clock time and date at job start Tue Mar 31 2020 22:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99617 * 2 1 4 4 H 1.48497 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47637 * 300.00480 * 3 2 1 6 6 H 1.48503 * 109.46923 * 60.00452 * 3 2 1 7 7 C 1.38950 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00132 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00183 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00184 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00008 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47151 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00056 * 66.04430 * 13 12 10 15 15 C 1.53035 * 109.52744 * 185.84176 * 14 13 12 16 16 C 1.53124 * 109.27475 * 300.82106 * 15 14 13 17 17 C 1.53123 * 109.16220 * 57.64849 * 16 15 14 18 18 H 1.09005 * 109.53033 * 62.30918 * 17 16 15 19 19 N 1.46497 * 109.50370 * 182.40465 * 17 16 15 20 20 C 1.34785 * 120.00123 * 274.80838 * 19 17 16 21 21 O 1.21624 * 119.99523 * 359.97438 * 20 19 17 22 22 C 1.47164 * 120.00101 * 179.97438 * 20 19 17 23 23 C 1.38243 * 128.47579 * 179.97438 * 22 20 19 24 24 N 1.31246 * 111.89050 * 180.02562 * 23 22 20 25 25 N 1.27335 * 120.03315 * 0.02562 * 24 23 22 26 26 S 1.56639 * 109.74555 * 359.69413 * 25 24 23 27 27 C 1.46846 * 110.99964 * 190.25398 * 13 12 10 28 28 H 0.96993 * 120.00642 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99814 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47234 * 59.99638 * 12 10 9 31 31 H 1.09004 * 109.46525 * 299.99963 * 12 10 9 32 32 H 1.09008 * 109.46456 * 305.85644 * 14 13 12 33 33 H 1.09003 * 109.46474 * 65.82149 * 14 13 12 34 34 H 1.08993 * 109.50220 * 60.75645 * 15 14 13 35 35 H 1.08992 * 109.50519 * 180.88040 * 15 14 13 36 36 H 1.09001 * 109.52183 * 297.74731 * 16 15 14 37 37 H 1.08995 * 109.52235 * 177.55901 * 16 15 14 38 38 H 0.96998 * 120.00245 * 94.80578 * 19 17 16 39 39 H 1.08002 * 124.05758 * 0.03499 * 23 22 20 40 40 H 1.09009 * 109.46169 * 294.17270 * 27 13 12 41 41 H 1.08995 * 109.46669 * 54.15371 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8892 2.3966 -1.2123 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9637 -6.0183 1.2512 15 6 4.0440 -7.0982 1.1576 16 6 3.3818 -8.4546 0.8999 17 6 2.5522 -8.3729 -0.3846 18 1 3.2077 -8.1585 -1.2287 19 7 1.8692 -9.6496 -0.6076 20 6 2.5071 -10.6534 -1.2418 21 8 3.6496 -10.4991 -1.6291 22 6 1.8212 -11.9361 -1.4654 23 6 2.3028 -13.0717 -2.0895 24 7 1.4109 -14.0342 -2.1103 25 7 0.2626 -13.8504 -1.5915 26 16 0.1769 -12.4047 -0.9947 27 6 1.5153 -7.2560 -0.2462 28 1 -0.4851 0.8399 0.0004 29 1 0.3535 -2.3907 -0.0005 30 1 0.6177 -4.9205 -0.8913 31 1 0.6170 -4.9208 0.8887 32 1 3.4329 -5.0490 1.4205 33 1 2.2929 -6.2464 2.0795 34 1 4.7232 -6.8633 0.3382 35 1 4.6015 -7.1373 2.0933 36 1 2.7321 -8.7077 1.7376 37 1 4.1501 -9.2198 0.7894 38 1 0.9579 -9.7725 -0.2990 39 1 3.2942 -13.1567 -2.5094 40 1 0.8513 -7.4784 0.5892 41 1 0.9325 -7.1859 -1.1647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490428019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:17 Heat of formation + Delta-G solvation = 11.068938 kcal Electronic energy + Delta-G solvation = -26195.463483 eV Core-core repulsion = 22238.246210 eV Total energy + Delta-G solvation = -3957.217273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32964 -40.30426 -38.99764 -37.62182 -35.05961 -33.90692 -32.96082 -32.44076 -31.23436 -30.00997 -27.91204 -27.43469 -24.75718 -24.07629 -22.94072 -22.29423 -21.05433 -20.09415 -19.64468 -19.22075 -17.98620 -17.81477 -16.62085 -16.37873 -16.04307 -15.73239 -15.25119 -15.06324 -14.94898 -14.70940 -14.47578 -14.03909 -13.90207 -13.54019 -13.32465 -13.28941 -13.18252 -12.57988 -12.46271 -12.13348 -11.58936 -11.51256 -11.43592 -11.12654 -10.95384 -10.84599 -10.71979 -10.62617 -10.59561 -10.40231 -10.36009 -10.34509 -10.25073 -9.50819 -9.47102 -8.50651 -8.02423 -7.92651 -6.44743 -3.85448 -0.78309 0.28062 0.95909 1.48244 2.44148 2.52797 3.14262 3.25343 3.32348 3.51267 3.85690 3.92841 4.15893 4.19837 4.24414 4.63105 4.68727 4.98018 5.01227 5.08837 5.19673 5.22232 5.25840 5.47300 5.52268 5.62867 5.72509 5.82177 5.83227 5.96890 5.99740 6.04549 6.22989 6.39817 6.48894 6.88088 7.12931 7.18680 7.29638 7.52883 7.59648 8.03524 8.58380 9.15384 9.51115 10.02559 10.73005 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027893 B = 0.001943 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.577836 B =14406.491883 C =14930.653954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.576 6.576 12 C 0.048 3.952 13 N -0.510 5.510 14 C 0.049 3.951 15 C -0.110 4.110 16 C -0.129 4.129 17 C 0.149 3.851 18 H 0.106 0.894 19 N -0.715 5.715 20 C 0.603 3.397 21 O -0.509 6.509 22 C -0.285 4.285 23 C 0.075 3.925 24 N -0.250 5.250 25 N -0.254 5.254 26 S 0.421 5.579 27 C 0.049 3.951 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.107 0.893 33 H 0.023 0.977 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.397 0.603 39 H 0.217 0.783 40 H 0.036 0.964 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.594 -23.043 1.203 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.460 6.460 12 C -0.083 4.083 13 N -0.235 5.235 14 C -0.078 4.078 15 C -0.149 4.149 16 C -0.168 4.168 17 C 0.045 3.955 18 H 0.124 0.876 19 N -0.366 5.366 20 C 0.385 3.615 21 O -0.384 6.384 22 C -0.426 4.426 23 C -0.092 4.092 24 N -0.115 5.115 25 N -0.236 5.236 26 S 0.555 5.445 27 C -0.080 4.080 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.232 0.768 39 H 0.234 0.766 40 H 0.054 0.946 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.434 -23.617 0.840 23.757 hybrid contribution -0.053 1.068 0.402 1.142 sum -2.488 -22.549 1.242 22.720 Atomic orbital electron populations 1.69613 1.05937 1.28073 1.50702 1.25264 0.95639 0.99745 0.97349 0.85803 0.79736 0.81141 0.77695 1.19195 1.20759 1.20796 1.19745 0.93397 0.82148 1.47418 0.87814 1.41869 1.09188 1.04595 1.64416 1.19689 0.88420 0.84489 0.84557 1.90494 1.13631 1.86817 1.55010 1.21840 0.93804 0.91073 1.01611 1.61376 1.25104 1.00586 1.36415 1.22339 0.95178 1.01941 0.88366 1.21505 0.98160 0.92738 1.02476 1.21998 0.99445 0.98855 0.96521 1.21102 0.94211 0.80269 0.99899 0.87615 1.45918 1.17727 1.14035 1.58931 1.16428 0.85515 0.81198 0.78335 1.90894 1.16515 1.80901 1.50061 1.28114 1.00983 1.01907 1.11579 1.24520 1.01632 0.85956 0.97058 1.70720 0.96049 1.28396 1.16319 1.78912 1.16101 1.13939 1.14627 1.82619 1.09538 1.09317 1.42999 1.22259 0.94768 0.89718 1.01226 0.91924 0.77515 0.89255 0.93330 0.87481 0.95868 0.90438 0.91253 0.92140 0.91337 0.76841 0.76630 0.94596 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.07 9.68 -14.94 -0.14 -8.21 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -13.76 5.29 -10.97 -0.06 -13.81 16 10 C 0.44 9.94 7.46 -10.98 -0.08 9.86 16 11 O -0.58 -14.82 13.92 5.55 0.08 -14.74 16 12 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 13 N -0.51 -7.70 4.39 -236.11 -1.04 -8.73 16 14 C 0.05 0.73 5.11 -3.84 -0.02 0.71 16 15 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 16 C -0.13 -1.36 5.58 -26.60 -0.15 -1.50 16 17 C 0.15 1.56 2.62 -67.85 -0.18 1.38 16 18 H 0.11 1.37 7.58 -51.93 -0.39 0.98 16 19 N -0.71 -5.70 5.08 -54.89 -0.28 -5.98 16 20 C 0.60 5.73 7.77 -12.63 -0.10 5.63 16 21 O -0.51 -6.67 16.64 5.26 0.09 -6.58 16 22 C -0.28 -2.17 6.81 -35.96 -0.25 -2.41 16 23 C 0.08 0.59 11.55 -17.80 -0.21 0.38 16 24 N -0.25 -2.35 11.54 30.36 0.35 -2.00 16 25 N -0.25 -2.27 12.51 60.35 0.75 -1.51 16 26 S 0.42 2.43 23.05 -107.50 -2.48 -0.05 16 27 C 0.05 0.53 4.93 -3.84 -0.02 0.52 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.39 9.12 7.90 -40.82 -0.32 8.80 16 30 H 0.09 1.31 7.98 -51.93 -0.41 0.89 16 31 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.11 2.00 5.80 -51.92 -0.30 1.69 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.40 2.04 8.03 -40.82 -0.33 1.71 16 39 H 0.22 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 41 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -32.83 360.69 -7.94 -40.77 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.07 Total: 8.81 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.43 Total: 6.04 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.46 Total: -55.32 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: 0.16 Total: -21.33 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.48 Total: -0.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.83 -7.94 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490428019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.834 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds