Wall clock time and date at job start Tue Mar 31 2020 22:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99617 * 2 1 4 4 H 1.48497 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47637 * 300.00480 * 3 2 1 6 6 H 1.48503 * 109.46923 * 60.00452 * 3 2 1 7 7 C 1.38950 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00132 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00183 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00184 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00008 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47151 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00056 * 66.04430 * 13 12 10 15 15 C 1.53035 * 109.52744 * 185.84176 * 14 13 12 16 16 C 1.53124 * 109.27475 * 300.82106 * 15 14 13 17 17 C 1.53123 * 109.16220 * 57.64849 * 16 15 14 18 18 H 1.09005 * 109.53033 * 62.30918 * 17 16 15 19 19 N 1.46497 * 109.50370 * 182.40465 * 17 16 15 20 20 C 1.34785 * 120.00123 * 274.80838 * 19 17 16 21 21 O 1.21624 * 119.99523 * 359.97438 * 20 19 17 22 22 C 1.47164 * 120.00101 * 179.97438 * 20 19 17 23 23 C 1.38243 * 128.47579 * 179.97438 * 22 20 19 24 24 N 1.31246 * 111.89050 * 180.02562 * 23 22 20 25 25 N 1.27335 * 120.03315 * 0.02562 * 24 23 22 26 26 S 1.56639 * 109.74555 * 359.69413 * 25 24 23 27 27 C 1.46846 * 110.99964 * 190.25398 * 13 12 10 28 28 H 0.96993 * 120.00642 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99814 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47234 * 59.99638 * 12 10 9 31 31 H 1.09004 * 109.46525 * 299.99963 * 12 10 9 32 32 H 1.09008 * 109.46456 * 305.85644 * 14 13 12 33 33 H 1.09003 * 109.46474 * 65.82149 * 14 13 12 34 34 H 1.08993 * 109.50220 * 60.75645 * 15 14 13 35 35 H 1.08992 * 109.50519 * 180.88040 * 15 14 13 36 36 H 1.09001 * 109.52183 * 297.74731 * 16 15 14 37 37 H 1.08995 * 109.52235 * 177.55901 * 16 15 14 38 38 H 0.96998 * 120.00245 * 94.80578 * 19 17 16 39 39 H 1.08002 * 124.05758 * 0.03499 * 23 22 20 40 40 H 1.09009 * 109.46169 * 294.17270 * 27 13 12 41 41 H 1.08995 * 109.46669 * 54.15371 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8892 2.3966 -1.2123 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9637 -6.0183 1.2512 15 6 4.0440 -7.0982 1.1576 16 6 3.3818 -8.4546 0.8999 17 6 2.5522 -8.3729 -0.3846 18 1 3.2077 -8.1585 -1.2287 19 7 1.8692 -9.6496 -0.6076 20 6 2.5071 -10.6534 -1.2418 21 8 3.6496 -10.4991 -1.6291 22 6 1.8212 -11.9361 -1.4654 23 6 2.3028 -13.0717 -2.0895 24 7 1.4109 -14.0342 -2.1103 25 7 0.2626 -13.8504 -1.5915 26 16 0.1769 -12.4047 -0.9947 27 6 1.5153 -7.2560 -0.2462 28 1 -0.4851 0.8399 0.0004 29 1 0.3535 -2.3907 -0.0005 30 1 0.6177 -4.9205 -0.8913 31 1 0.6170 -4.9208 0.8887 32 1 3.4329 -5.0490 1.4205 33 1 2.2929 -6.2464 2.0795 34 1 4.7232 -6.8633 0.3382 35 1 4.6015 -7.1373 2.0933 36 1 2.7321 -8.7077 1.7376 37 1 4.1501 -9.2198 0.7894 38 1 0.9579 -9.7725 -0.2990 39 1 3.2942 -13.1567 -2.5094 40 1 0.8513 -7.4784 0.5892 41 1 0.9325 -7.1859 -1.1647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490428019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:17 Heat of formation + Delta-G solvation = -15.503957 kcal Electronic energy + Delta-G solvation = -26196.615770 eV Core-core repulsion = 22238.246210 eV Total energy + Delta-G solvation = -3958.369560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.95018 -41.16950 -40.33498 -39.01400 -36.19383 -35.65993 -33.95667 -33.25621 -33.08689 -30.89934 -29.00825 -28.40800 -26.48956 -24.89663 -24.04558 -23.18765 -21.78811 -21.08363 -20.86523 -20.24810 -19.83713 -18.64423 -17.67723 -17.45445 -17.00852 -16.70326 -16.51194 -16.25124 -15.98641 -15.79173 -15.71250 -15.36799 -15.19142 -14.80535 -14.50909 -14.42505 -13.85247 -13.82504 -13.49243 -13.42744 -13.03166 -12.96822 -12.66641 -12.37944 -12.37308 -12.11868 -11.94426 -11.80217 -11.59997 -11.50259 -11.37716 -11.20888 -11.19031 -10.92526 -10.27217 -10.20297 -9.96052 -9.16845 -8.44309 -5.91944 -1.37389 -0.25782 0.40840 0.86398 1.37522 1.43039 1.56426 1.69073 1.82363 2.10022 2.30738 2.82538 2.96552 3.23207 3.41667 3.53027 3.62652 3.77679 3.85836 4.06157 4.18563 4.33268 4.38227 4.46464 4.57133 4.57554 4.61838 4.64545 4.75262 4.91219 5.02161 5.04976 5.19918 5.29281 5.42359 5.44663 5.91474 6.10863 6.23404 6.25921 6.55627 6.64536 6.91869 7.16986 7.61192 8.17540 8.73223 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027893 B = 0.001943 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.577836 B =14406.491883 C =14930.653954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.990 3.010 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.328 4.328 8 H 0.077 0.923 9 N -0.576 5.576 10 C 0.440 3.560 11 O -0.614 6.614 12 C 0.061 3.939 13 N -0.535 5.535 14 C 0.053 3.947 15 C -0.105 4.105 16 C -0.120 4.120 17 C 0.156 3.844 18 H 0.076 0.924 19 N -0.699 5.699 20 C 0.607 3.393 21 O -0.550 6.550 22 C -0.302 4.302 23 C 0.076 3.924 24 N -0.278 5.278 25 N -0.290 5.290 26 S 0.514 5.486 27 C 0.053 3.947 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.415 0.585 39 H 0.227 0.773 40 H 0.067 0.933 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 -24.072 1.962 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.458 4.458 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.228 3.772 11 O -0.500 6.500 12 C -0.070 4.070 13 N -0.260 5.260 14 C -0.075 4.075 15 C -0.144 4.144 16 C -0.159 4.159 17 C 0.051 3.949 18 H 0.094 0.906 19 N -0.351 5.351 20 C 0.391 3.609 21 O -0.428 6.428 22 C -0.443 4.443 23 C -0.092 4.092 24 N -0.140 5.140 25 N -0.272 5.272 26 S 0.649 5.351 27 C -0.075 4.075 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.131 0.869 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.252 0.748 39 H 0.244 0.756 40 H 0.085 0.915 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.537 -24.683 1.609 25.148 hybrid contribution 0.554 1.363 0.199 1.484 sum -3.983 -23.320 1.808 23.727 Atomic orbital electron populations 1.69664 1.06691 1.29093 1.50716 1.25980 0.96533 1.02254 0.96571 0.84914 0.78040 0.77423 0.78235 1.19943 1.19796 1.19663 1.19652 0.92607 0.84048 1.49473 0.90466 1.41932 1.09313 1.04657 1.65443 1.20846 0.88338 0.86024 0.82005 1.90480 1.15811 1.87760 1.55938 1.21699 0.93369 0.88023 1.03870 1.61258 1.25861 1.02134 1.36794 1.22187 0.95899 1.00206 0.89169 1.21435 0.97377 0.93420 1.02164 1.21910 0.99589 0.97075 0.97320 1.20833 0.94022 0.81247 0.98800 0.90605 1.45659 1.18313 1.12783 1.58374 1.16567 0.84991 0.81721 0.77598 1.90882 1.18463 1.81718 1.51780 1.27928 1.02630 1.01075 1.12690 1.24748 1.01974 0.85798 0.96678 1.70786 0.96411 1.29323 1.17524 1.78649 1.16406 1.16385 1.15724 1.82204 1.06628 1.06470 1.39795 1.22306 0.94811 0.87346 1.03084 0.91405 0.76981 0.86877 0.90803 0.92081 0.93836 0.93075 0.89984 0.89732 0.91800 0.74757 0.75642 0.91482 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.70 13.05 21.66 0.28 -48.42 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.33 -18.27 9.68 84.04 0.81 -17.46 16 8 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 9 N -0.58 -28.51 5.29 -306.99 -1.62 -30.13 16 10 C 0.44 20.00 7.46 87.66 0.65 20.65 16 11 O -0.61 -32.85 13.92 -3.04 -0.04 -32.90 16 12 C 0.06 1.90 5.45 85.56 0.47 2.37 16 13 N -0.54 -15.34 4.39 -900.92 -3.96 -19.30 16 14 C 0.05 1.53 5.11 86.33 0.44 1.97 16 15 C -0.11 -2.59 6.09 30.65 0.19 -2.40 16 16 C -0.12 -2.28 5.58 30.68 0.17 -2.11 16 17 C 0.16 2.94 2.62 45.04 0.12 3.06 16 18 H 0.08 1.95 7.58 -2.38 -0.02 1.93 16 19 N -0.70 -9.18 5.08 -445.80 -2.26 -11.45 16 20 C 0.61 10.56 7.77 86.59 0.67 11.23 16 21 O -0.55 -14.27 16.64 -4.11 -0.07 -14.34 16 22 C -0.30 -4.02 6.81 24.62 0.17 -3.85 16 23 C 0.08 1.11 11.55 84.78 0.98 2.09 16 24 N -0.28 -4.93 11.54 -57.86 -0.67 -5.60 16 25 N -0.29 -4.66 12.51 37.02 0.46 -4.19 16 26 S 0.51 4.40 23.05 -56.49 -1.30 3.10 16 27 C 0.05 0.96 4.93 86.32 0.43 1.39 16 28 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 29 H 0.40 18.49 7.90 -92.71 -0.73 17.76 16 30 H 0.11 2.99 7.98 -2.39 -0.02 2.97 16 31 H 0.07 1.95 8.12 -2.38 -0.02 1.93 16 32 H 0.06 2.35 5.80 -2.38 -0.01 2.34 16 33 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.42 2.51 8.03 -92.71 -0.74 1.76 16 39 H 0.23 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.09 1.52 8.01 -2.39 -0.02 1.50 16 Total: -1.00 -74.43 360.69 -1.96 -76.40 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.38 Total: 25.59 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 5.56 Total: 16.68 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -7.77 Total: -119.09 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -0.11 Total: -47.24 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.30 Total: 3.10 kcal Total: -74.43 -1.96 -76.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490428019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.894 kcal (2) G-P(sol) polarization free energy of solvation -74.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds