Wall clock time and date at job start Tue Mar 31 2020 22:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47244 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47205 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47344 * 149.99974 * 3 2 1 7 7 C 1.38795 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46969 * 120.58966 * 359.71383 * 13 11 10 15 15 C 1.53816 * 108.39289 * 124.76089 * 14 13 11 16 16 N 1.46968 * 108.57992 * 49.64095 * 15 14 13 17 17 C 1.34769 * 120.59480 * 124.62316 * 16 15 14 18 18 O 1.21286 * 120.00007 * 180.02562 * 17 16 15 19 19 C 1.50702 * 120.00191 * 0.02562 * 17 16 15 20 20 C 1.50701 * 109.47148 * 180.02562 * 19 17 16 21 21 N 1.33241 * 125.52985 * 89.99421 * 20 19 17 22 22 C 1.30830 * 109.83201 * 179.97438 * 21 20 19 23 23 N 1.34430 * 108.07795 * 0.02562 * 22 21 20 24 24 H 0.96998 * 126.82432 * 179.97438 * 23 22 21 25 25 N 1.30717 * 125.52407 * 269.69427 * 20 19 17 26 26 C 1.46966 * 118.80763 * 304.64116 * 16 15 14 27 27 C 1.46959 * 120.59603 * 180.02562 * 13 11 10 28 28 H 0.97007 * 119.99682 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 30 30 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 31 31 H 1.08994 * 109.61309 * 244.53909 * 14 13 11 32 32 H 1.08996 * 109.61062 * 5.05792 * 14 13 11 33 33 H 1.08998 * 109.74579 * 289.84631 * 15 14 13 34 34 H 1.09012 * 109.67246 * 169.38324 * 15 14 13 35 35 H 1.09004 * 109.46853 * 299.99738 * 19 17 16 36 36 H 1.08999 * 109.47129 * 59.99984 * 19 17 16 37 37 H 1.08000 * 125.96310 * 179.97438 * 22 21 20 38 38 H 1.08993 * 109.61363 * 295.48719 * 26 16 15 39 39 H 1.09004 * 109.60730 * 174.96887 * 26 16 15 40 40 H 1.08998 * 109.60825 * 354.94440 * 27 13 11 41 41 H 1.08998 * 109.61132 * 115.45310 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5729 -3.2327 0.0039 12 8 6.3439 -2.2965 0.0035 13 7 6.0456 -4.4949 0.0045 14 6 5.1230 -5.6389 0.0102 15 6 5.4617 -6.5414 -1.1885 16 7 6.9087 -6.7984 -1.1871 17 6 7.3812 -8.0605 -1.1856 18 8 8.5775 -8.2602 -1.1840 19 6 6.4232 -9.2238 -1.1858 20 6 7.2006 -10.5148 -1.1832 21 7 7.5985 -11.1769 -0.0975 22 6 8.2482 -12.2566 -0.4494 23 7 8.2791 -12.3058 -1.7924 24 1 8.6926 -12.9917 -2.3397 25 7 7.5892 -11.1696 -2.2458 26 6 7.8311 -5.6542 -1.1871 27 6 7.4925 -4.7518 0.0064 28 1 -0.4850 0.8401 -0.0004 29 1 3.6432 -3.4311 0.8927 30 1 3.6439 -3.4323 -0.8873 31 1 5.2405 -6.1990 0.9378 32 1 4.0969 -5.2819 -0.0771 33 1 5.1794 -6.0431 -2.1159 34 1 4.9225 -7.4849 -1.1014 35 1 5.7945 -9.1769 -0.2965 36 1 5.7966 -9.1783 -2.0765 37 1 8.6845 -12.9814 0.2220 38 1 7.7176 -5.0927 -2.1143 39 1 8.8569 -6.0114 -1.0960 40 1 8.0316 -3.8087 -0.0833 41 1 7.7744 -5.2502 0.9339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490988350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:49 Heat of formation + Delta-G solvation = 4.586740 kcal Electronic energy + Delta-G solvation = -26197.757182 eV Core-core repulsion = 22240.258820 eV Total energy + Delta-G solvation = -3957.498362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.07227 -41.56089 -40.43783 -38.06600 -35.20212 -34.63535 -34.40977 -33.09669 -32.54774 -30.82138 -30.25079 -28.24189 -27.76966 -24.91161 -24.08593 -23.63011 -22.08869 -20.96997 -20.03721 -19.40101 -19.17753 -18.54073 -17.63465 -17.31399 -17.08535 -16.87831 -16.77740 -16.65434 -16.15548 -15.92689 -15.68973 -14.99260 -14.98438 -14.88425 -14.66288 -14.47651 -14.33946 -13.53891 -13.46633 -13.31633 -13.16478 -13.03197 -13.00124 -12.70235 -12.63224 -12.54183 -12.34268 -11.84657 -11.27623 -11.14424 -11.07853 -10.97445 -10.94775 -10.61935 -10.47666 -10.36475 -9.43563 -8.96397 -8.48593 -6.18647 0.65036 0.99411 1.32939 1.45138 1.45963 1.52255 1.58511 1.63865 1.85812 1.97944 2.22133 2.27232 2.71913 2.89976 3.14959 3.44900 3.52811 3.68439 3.76709 3.95949 4.13517 4.14966 4.18504 4.21701 4.33673 4.41999 4.45014 4.49994 4.56475 4.65353 4.67343 4.78847 4.97498 5.22982 5.31764 5.37817 5.42390 5.74215 6.14923 6.15889 6.26487 6.30688 6.97349 7.03153 7.06945 7.10239 8.63281 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.030217 B = 0.002045 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.401830 B =13686.191243 C =14305.509883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.238 1.238 7 C -0.523 4.523 8 H 0.068 0.932 9 S -0.184 6.184 10 C -0.105 4.105 11 C 0.536 3.464 12 O -0.563 6.563 13 N -0.608 5.608 14 C 0.083 3.917 15 C 0.089 3.911 16 N -0.608 5.608 17 C 0.527 3.473 18 O -0.579 6.579 19 C -0.047 4.047 20 C 0.231 3.769 21 N -0.574 5.574 22 C 0.274 3.726 23 N -0.476 5.476 24 H 0.457 0.543 25 N -0.342 5.342 26 C 0.107 3.893 27 C 0.105 3.895 28 H 0.276 0.724 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.271 0.729 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.183 -28.265 -2.053 31.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.186 1.186 6 H -0.162 1.162 7 C -0.671 4.671 8 H 0.086 0.914 9 S 0.043 5.957 10 C -0.256 4.256 11 C 0.324 3.676 12 O -0.441 6.441 13 N -0.342 5.342 14 C -0.040 4.040 15 C -0.034 4.034 16 N -0.341 5.341 17 C 0.315 3.685 18 O -0.458 6.458 19 C -0.089 4.089 20 C -0.052 4.052 21 N -0.303 5.303 22 C -0.024 4.024 23 N -0.196 5.196 24 H 0.306 0.694 25 N -0.172 5.172 26 C -0.017 4.017 27 C -0.018 4.018 28 H 0.085 0.915 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.115 0.885 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.157 0.843 35 H 0.169 0.831 36 H 0.162 0.838 37 H 0.286 0.714 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.543 -26.556 -2.433 30.867 hybrid contribution -0.501 -0.678 -0.264 0.883 sum 15.043 -27.235 -2.697 31.229 Atomic orbital electron populations 1.70013 1.07160 1.28879 1.49291 1.25509 0.95231 1.02077 0.93120 0.85915 0.80692 0.79987 0.80080 1.18865 1.18596 1.16226 1.22438 0.90003 0.96750 1.57869 0.91400 1.84844 1.06714 1.06552 1.97576 1.23286 0.95401 0.99311 1.07585 1.20106 0.89734 0.82730 0.75032 1.90687 1.59373 1.43411 1.50642 1.48015 1.07534 1.05173 1.73468 1.22612 0.94666 0.86535 1.00146 1.22581 0.79006 1.02668 0.99134 1.48059 1.08238 1.04776 1.72996 1.20682 0.88936 0.84093 0.74788 1.90707 1.18475 1.85206 1.51431 1.20093 0.96058 0.83656 1.09054 1.23709 0.98038 0.97455 0.86030 1.70353 1.19842 1.08321 1.31823 1.26998 0.94386 0.96272 0.84760 1.48036 1.43318 1.20514 1.07683 0.69425 1.77872 1.16797 0.99135 1.23400 1.21870 0.95130 0.86391 0.98277 1.21943 0.80695 1.00371 0.98819 0.91472 0.86562 0.86238 0.88510 0.86727 0.89498 0.84334 0.83147 0.83783 0.71399 0.90782 0.88658 0.89224 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.46 13.97 21.65 0.30 -54.15 16 2 C 0.05 2.64 5.50 84.86 0.47 3.11 16 3 Si 0.91 44.33 27.74 68.60 1.90 46.23 16 4 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 7 C -0.52 -29.28 10.04 67.95 0.68 -28.60 16 8 H 0.07 3.95 8.03 -2.91 -0.02 3.93 16 9 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 10 C -0.11 -3.64 4.50 71.24 0.32 -3.32 16 11 C 0.54 17.49 7.72 87.66 0.68 18.17 16 12 O -0.56 -23.39 15.27 -3.02 -0.05 -23.43 16 13 N -0.61 -13.83 2.94 -817.08 -2.40 -16.23 16 14 C 0.08 1.13 6.54 86.57 0.57 1.70 16 15 C 0.09 0.89 6.52 86.57 0.56 1.46 16 16 N -0.61 -9.90 2.95 -817.04 -2.41 -12.31 16 17 C 0.53 10.34 7.69 87.66 0.67 11.02 16 18 O -0.58 -16.89 15.44 -3.05 -0.05 -16.94 16 19 C -0.05 -0.62 4.67 29.10 0.14 -0.49 16 20 C 0.23 4.49 6.63 138.63 0.92 5.41 16 21 N -0.57 -10.73 11.19 -191.80 -2.15 -12.88 16 22 C 0.27 2.79 13.13 180.36 2.37 5.16 16 23 N -0.48 -5.35 7.45 -60.49 -0.45 -5.80 16 24 H 0.46 1.53 8.96 -213.09 -1.91 -0.38 16 25 N -0.34 -6.77 12.80 -51.33 -0.66 -7.43 16 26 C 0.11 2.08 6.60 86.43 0.57 2.65 16 27 C 0.11 2.25 6.59 86.43 0.57 2.82 16 28 H 0.28 15.25 8.31 -92.70 -0.77 14.48 16 29 H 0.12 3.62 7.90 -2.39 -0.02 3.60 16 30 H 0.12 3.63 7.73 -2.39 -0.02 3.61 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.11 1.42 5.91 -2.39 -0.01 1.40 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.14 0.35 5.91 -2.38 -0.01 0.34 16 35 H 0.15 1.13 7.72 -2.39 -0.02 1.11 16 36 H 0.14 1.12 7.91 -2.39 -0.02 1.10 16 37 H 0.27 -0.45 8.06 -2.91 -0.02 -0.47 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.10 2.05 6.99 -2.38 -0.02 2.04 16 40 H 0.09 2.27 6.99 -2.39 -0.02 2.25 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -90.69 358.35 0.66 -90.03 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -0.86 Total: 3.81 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 8.51 Total: 19.09 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -7.76 Total: -108.80 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.09 Total: -40.37 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.23 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -90.69 0.66 -90.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490988350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.620 kcal (2) G-P(sol) polarization free energy of solvation -90.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds