Wall clock time and date at job start Tue Mar 31 2020 22:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.47161 * 269.99775 * 3 2 1 5 5 H 1.48500 * 109.46998 * 29.99546 * 3 2 1 6 6 H 1.48498 * 109.47091 * 149.99682 * 3 2 1 7 7 C 1.38801 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99656 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99930 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46885 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00218 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99533 * 180.02562 * 11 10 9 14 14 C 1.47022 * 125.65178 * 359.95139 * 13 11 10 15 15 C 1.54321 * 107.27140 * 181.09876 * 14 13 11 16 16 C 1.55162 * 102.94395 * 22.19352 * 15 14 13 17 17 H 1.08997 * 111.03037 * 82.58516 * 16 15 14 18 18 N 1.46496 * 111.00464 * 206.42394 * 16 15 14 19 19 C 1.34775 * 119.99642 * 198.65283 * 18 16 15 20 20 O 1.21279 * 120.00300 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99773 * 180.02562 * 19 18 16 22 22 N 1.46506 * 109.47289 * 179.97438 * 21 19 18 23 23 C 1.34423 * 126.82268 * 124.99738 * 22 21 19 24 24 N 1.30831 * 108.07627 * 179.97438 * 23 22 21 25 25 C 1.33244 * 109.82874 * 359.97438 * 24 23 22 26 26 N 1.30712 * 108.94503 * 359.75908 * 25 24 23 27 27 C 1.47430 * 125.64668 * 179.97438 * 13 11 10 28 28 H 0.97002 * 120.00078 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46977 * 59.99646 * 10 9 7 30 30 H 1.09001 * 109.46870 * 299.99596 * 10 9 7 31 31 H 1.08995 * 109.88217 * 300.52037 * 14 13 11 32 32 H 1.09002 * 109.87562 * 61.52901 * 14 13 11 33 33 H 1.09004 * 110.72242 * 263.83437 * 15 14 13 34 34 H 1.09001 * 110.71954 * 140.56028 * 15 14 13 35 35 H 0.96998 * 120.00192 * 18.64807 * 18 16 15 36 36 H 1.09001 * 109.47438 * 59.99564 * 21 19 18 37 37 H 1.09004 * 109.47113 * 299.99819 * 21 19 18 38 38 H 1.08000 * 125.96246 * 0.02562 * 23 22 21 39 39 H 1.07995 * 125.52387 * 179.97438 * 25 24 23 40 40 H 1.09001 * 110.36157 * 36.99416 * 27 13 11 41 41 H 1.08997 * 110.36558 * 274.67481 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0021 13 7 2.8441 -6.3431 0.0018 14 6 4.3111 -6.2450 0.0009 15 6 4.8665 -7.6846 -0.0261 16 6 3.6842 -8.5023 -0.6101 17 1 3.6685 -8.4447 -1.6984 18 7 3.7373 -9.8959 -0.1615 19 6 3.0514 -10.8451 -0.8286 20 8 2.3898 -10.5455 -1.7999 21 6 3.1056 -12.2786 -0.3668 22 7 2.2823 -13.1078 -1.2505 23 6 2.6743 -14.2037 -1.9230 24 7 1.6478 -14.6552 -2.5970 25 6 0.5876 -13.8778 -2.3804 26 7 0.9249 -12.9195 -1.5580 27 6 2.4656 -7.7679 0.0030 28 1 -0.4850 0.8401 -0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1244 -3.7313 -0.8895 31 1 4.6458 -5.7019 -0.8828 32 1 4.6488 -5.7318 0.9013 33 1 5.1093 -8.0233 0.9811 34 1 5.7387 -7.7493 -0.6766 35 1 4.2662 -10.1355 0.6155 36 1 2.7257 -12.3466 0.6527 37 1 4.1369 -12.6305 -0.3944 38 1 3.6637 -14.6365 -1.9088 39 1 -0.3925 -14.0189 -2.8115 40 1 1.5792 -7.9254 -0.6116 41 1 2.2879 -8.1123 1.0217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491793289.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:06 Heat of formation + Delta-G solvation = 5.285791 kcal Electronic energy + Delta-G solvation = -25641.331724 eV Core-core repulsion = 21683.863676 eV Total energy + Delta-G solvation = -3957.468049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.99429 -41.41649 -40.48970 -38.53271 -35.48920 -34.99466 -34.60492 -32.38757 -32.14368 -30.89832 -29.80096 -28.31720 -27.64299 -24.75800 -23.44932 -22.89022 -22.20055 -21.65871 -20.77530 -19.67892 -18.51983 -18.46440 -18.07463 -17.65882 -16.96375 -16.89659 -16.59119 -16.44231 -16.07171 -15.75257 -15.63333 -15.30275 -15.03747 -14.67197 -14.53027 -14.42056 -14.24662 -13.90400 -13.68045 -13.44331 -13.18221 -12.90170 -12.83781 -12.77746 -12.63048 -12.58243 -11.89450 -11.76138 -11.41308 -11.15893 -11.09507 -11.00833 -10.78180 -10.53884 -10.34008 -10.30552 -9.77168 -8.71699 -8.36140 -6.15977 0.68745 1.17397 1.32371 1.41272 1.42183 1.46053 1.49739 1.55124 1.87077 2.03722 2.23405 2.25772 2.98075 3.17502 3.35051 3.48355 3.54530 3.56744 3.73766 3.85675 3.95181 4.09757 4.15422 4.17942 4.21126 4.29725 4.40358 4.43065 4.58004 4.71215 4.75973 4.92743 5.06840 5.19758 5.25850 5.39701 5.39969 5.45648 5.90666 6.18026 6.29141 6.44893 7.03239 7.04627 7.12267 7.17220 8.73294 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028674 B = 0.001829 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.262188 B =15304.936957 C =16021.076883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.002 2.998 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.544 4.544 8 H 0.086 0.914 9 S -0.159 6.159 10 C -0.116 4.116 11 C 0.543 3.457 12 O -0.572 6.572 13 N -0.617 5.617 14 C 0.087 3.913 15 C -0.111 4.111 16 C 0.146 3.854 17 H 0.082 0.918 18 N -0.695 5.695 19 C 0.494 3.506 20 O -0.569 6.569 21 C 0.112 3.888 22 N -0.379 5.379 23 C 0.266 3.734 24 N -0.579 5.579 25 C 0.183 3.817 26 N -0.342 5.342 27 C 0.095 3.905 28 H 0.271 0.729 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.429 0.571 36 H 0.145 0.855 37 H 0.195 0.805 38 H 0.273 0.727 39 H 0.228 0.772 40 H 0.035 0.965 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.322 -29.310 3.408 36.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.068 5.932 10 C -0.267 4.267 11 C 0.331 3.669 12 O -0.450 6.450 13 N -0.352 5.352 14 C -0.035 4.035 15 C -0.149 4.149 16 C 0.039 3.961 17 H 0.100 0.900 18 N -0.350 5.350 19 C 0.279 3.721 20 O -0.446 6.446 21 C -0.012 4.012 22 N -0.170 5.170 23 C -0.029 4.029 24 N -0.307 5.307 25 C -0.120 4.120 26 N -0.169 5.169 27 C -0.030 4.030 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.269 0.731 36 H 0.163 0.837 37 H 0.212 0.788 38 H 0.289 0.711 39 H 0.244 0.756 40 H 0.054 0.946 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.460 -28.930 2.826 34.435 hybrid contribution 1.010 1.436 0.085 1.757 sum 19.470 -27.494 2.911 33.816 Atomic orbital electron populations 1.70199 1.08112 1.28658 1.47946 1.26194 0.95989 1.03499 0.93666 0.84904 0.78246 0.75714 0.78797 1.19361 1.20340 1.17826 1.23190 0.95393 0.91614 1.58987 0.89583 1.85711 1.10794 0.99600 1.97067 1.23278 1.03338 0.93349 1.06727 1.19935 0.85426 0.86258 0.75269 1.90702 1.17517 1.85827 1.50997 1.48326 1.08445 1.05029 1.73435 1.22467 0.77100 0.99900 1.04054 1.22933 0.96639 0.90486 1.04835 1.21811 0.94242 0.80916 0.99175 0.89999 1.45509 1.50554 1.05535 1.33363 1.21328 0.78666 0.89016 0.83068 1.90861 1.41520 1.83120 1.29111 1.22054 0.99030 0.85557 0.94584 1.50182 1.07389 1.22455 1.36985 1.27099 1.01562 0.85668 0.88605 1.70520 1.00217 1.32367 1.27596 1.26404 1.00523 0.89256 0.95813 1.78147 0.93411 1.23920 1.21401 1.22610 0.98803 0.80386 1.01166 0.91992 0.86859 0.87345 0.90199 0.88880 0.86314 0.86026 0.73100 0.83733 0.78804 0.71136 0.75562 0.94581 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.89 13.22 21.65 0.29 -56.60 16 2 C 0.01 0.64 5.49 84.86 0.47 1.10 16 3 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.54 -31.28 9.50 67.95 0.65 -30.64 16 8 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 9 S -0.16 -9.09 20.57 -56.49 -1.16 -10.26 16 10 C -0.12 -4.75 5.35 71.24 0.38 -4.37 16 11 C 0.54 21.91 7.87 87.66 0.69 22.60 16 12 O -0.57 -29.38 16.12 -3.03 -0.05 -29.43 16 13 N -0.62 -17.22 3.33 -811.76 -2.70 -19.92 16 14 C 0.09 1.32 6.49 86.73 0.56 1.89 16 15 C -0.11 -0.68 6.58 31.78 0.21 -0.47 16 16 C 0.15 2.07 3.32 46.39 0.15 2.22 16 17 H 0.08 1.64 7.73 -2.39 -0.02 1.62 16 18 N -0.69 -4.95 5.23 -435.94 -2.28 -7.23 16 19 C 0.49 6.77 7.87 87.66 0.69 7.45 16 20 O -0.57 -16.15 15.50 -3.03 -0.05 -16.20 16 21 C 0.11 0.43 7.03 85.63 0.60 1.03 16 22 N -0.38 -5.35 3.40 -355.79 -1.21 -6.56 16 23 C 0.27 2.87 12.63 180.36 2.28 5.15 16 24 N -0.58 -11.05 11.19 -204.01 -2.28 -13.33 16 25 C 0.18 3.92 13.03 180.76 2.36 6.28 16 26 N -0.34 -8.29 11.83 -61.25 -0.72 -9.01 16 27 C 0.09 2.36 6.60 86.86 0.57 2.93 16 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 30 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.12 0.02 8.00 -2.38 -0.02 0.00 16 34 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.43 -1.28 8.51 -92.71 -0.79 -2.07 16 36 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.19 -1.75 8.09 -2.38 -0.02 -1.77 16 38 H 0.27 -0.66 8.06 -2.91 -0.02 -0.68 16 39 H 0.23 3.66 8.06 -2.91 -0.02 3.63 16 40 H 0.04 1.25 8.04 -2.39 -0.02 1.23 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -107.13 372.59 1.74 -105.38 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 0.28 Total: 2.36 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 9.61 Total: 15.17 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -8.91 Total: -112.66 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -0.10 Total: -45.63 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.16 Total: -10.26 kcal Total: -107.13 1.74 -105.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491793289.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.669 kcal (2) G-P(sol) polarization free energy of solvation -107.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds