Wall clock time and date at job start Tue Mar 31 2020 22:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86791 * 120.00164 * 2 1 4 4 H 1.48501 * 109.47426 * 270.00324 * 3 2 1 5 5 H 1.48506 * 109.47265 * 30.00518 * 3 2 1 6 6 H 1.48501 * 109.47110 * 150.00053 * 3 2 1 7 7 C 1.38801 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99735 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00294 * 359.97438 * 7 2 1 10 10 C 1.81003 * 100.00080 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47091 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00137 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00172 * 180.02562 * 13 11 10 15 15 C 1.53035 * 109.46104 * 205.00028 * 14 13 11 16 16 C 1.53192 * 109.31257 * 178.62426 * 15 14 13 17 17 N 1.46924 * 108.77479 * 54.63907 * 16 15 14 18 18 C 1.34773 * 120.63655 * 126.36786 * 17 16 15 19 19 O 1.21561 * 119.99660 * 3.89977 * 18 17 16 20 20 C 1.47863 * 120.00454 * 183.62179 * 18 17 16 21 21 N 1.34547 * 126.04729 * 352.84482 * 20 18 17 22 22 C 1.30877 * 107.26831 * 179.88776 * 21 20 18 23 23 N 1.34580 * 107.62608 * 0.37027 * 22 21 20 24 24 H 0.96996 * 125.74733 * 179.78890 * 23 22 21 25 25 N 1.28852 * 108.50028 * 359.76318 * 23 22 21 26 26 C 1.46927 * 118.73496 * 306.63943 * 17 16 15 27 27 C 1.52763 * 109.00978 * 53.31300 * 26 17 16 28 28 H 0.97001 * 119.99801 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47100 * 59.99845 * 10 9 7 30 30 H 1.08993 * 109.47160 * 300.00186 * 10 9 7 31 31 H 0.97007 * 119.99998 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.45592 * 324.97199 * 14 13 11 33 33 H 1.09004 * 109.49967 * 58.67111 * 15 14 13 34 34 H 1.09002 * 109.52413 * 298.59278 * 15 14 13 35 35 H 1.08997 * 109.58706 * 294.84917 * 16 15 14 36 36 H 1.09000 * 109.70084 * 174.49030 * 16 15 14 37 37 H 1.08004 * 126.18385 * 180.12854 * 22 21 20 38 38 H 1.09004 * 109.58595 * 173.14654 * 26 17 16 39 39 H 1.09003 * 109.58676 * 293.57138 * 26 17 16 40 40 H 1.09001 * 109.56590 * 185.54925 * 27 26 17 41 41 H 1.09000 * 109.35623 * 65.49507 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9872 -5.3028 0.0001 12 8 0.7910 -5.5024 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.3302 -7.7152 -0.0003 15 6 3.3764 -8.6513 0.6091 16 6 2.8223 -10.0792 0.6390 17 7 2.3979 -10.4503 -0.7178 18 6 2.8582 -11.5766 -1.2975 19 8 3.5756 -12.3326 -0.6718 20 6 2.4856 -11.8958 -2.6923 21 7 1.5945 -11.2270 -3.4466 22 6 1.5518 -11.8182 -4.6135 23 7 2.4091 -12.8550 -4.5765 24 1 2.5817 -13.4738 -5.3033 25 7 2.9623 -12.8869 -3.4132 26 6 1.4669 -9.5669 -1.4331 27 6 2.0318 -8.1476 -1.4376 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 0.8895 30 1 3.1244 -3.7315 -0.8904 31 1 3.8008 -6.1836 -0.0014 32 1 1.4150 -7.7601 0.5900 33 1 3.6057 -8.3287 1.6247 34 1 4.2837 -8.6257 0.0056 35 1 1.9682 -10.1257 1.3146 36 1 3.5963 -10.7666 0.9805 37 1 0.9368 -11.5289 -5.4528 38 1 1.3485 -9.9149 -2.4593 39 1 0.5000 -9.5708 -0.9299 40 1 1.3040 -7.4665 -1.8788 41 1 2.9515 -8.1267 -2.0223 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492118083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:17 Heat of formation + Delta-G solvation = 32.576650 kcal Electronic energy + Delta-G solvation = -26173.597577 eV Core-core repulsion = 22217.312949 eV Total energy + Delta-G solvation = -3956.284628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.02142 -40.40509 -39.20586 -37.37934 -34.79483 -33.99382 -32.42282 -32.02437 -31.49951 -31.22565 -28.89915 -26.05460 -25.45688 -24.18261 -23.53125 -23.09486 -21.17375 -20.27998 -19.93365 -18.97262 -17.81590 -17.31614 -16.87797 -16.67670 -16.29252 -15.88889 -15.48744 -15.20393 -14.90970 -14.79888 -14.36778 -14.14727 -13.96139 -13.70581 -13.27218 -13.10490 -12.95846 -12.62396 -12.34419 -12.01643 -11.97444 -11.49046 -11.29951 -11.28194 -11.05978 -11.01729 -10.80018 -10.70130 -10.62508 -10.26314 -10.09333 -9.80460 -9.39126 -9.06320 -8.92181 -8.81259 -8.22603 -6.48950 -6.21169 -3.91383 0.91917 1.56248 1.99898 2.60424 2.94322 3.06276 3.11703 3.22651 3.28416 3.32794 3.54468 3.73399 4.04517 4.21137 4.26891 4.52308 4.75810 4.81594 5.04940 5.10528 5.11900 5.14008 5.22124 5.32657 5.48303 5.55405 5.56254 5.67171 5.70091 5.74587 5.90815 5.92697 6.08761 6.15646 6.19245 6.20096 6.51014 6.69305 6.99413 7.41506 7.60232 7.74793 7.81047 8.35846 8.64494 9.24244 10.86228 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024219 B = 0.001994 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.842840 B =14039.851917 C =14650.202693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.735 5.735 14 C 0.145 3.855 15 C -0.141 4.141 16 C 0.117 3.883 17 N -0.588 5.588 18 C 0.614 3.386 19 O -0.523 6.523 20 C 0.155 3.845 21 N -0.480 5.480 22 C 0.203 3.797 23 N -0.399 5.399 24 H 0.454 0.546 25 N -0.248 5.248 26 C 0.063 3.937 27 C -0.141 4.141 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.233 0.767 38 H 0.156 0.844 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.032 -26.023 -9.162 28.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.389 5.389 14 C 0.040 3.960 15 C -0.179 4.179 16 C -0.006 4.006 17 N -0.321 5.321 18 C 0.398 3.602 19 O -0.396 6.396 20 C -0.126 4.126 21 N -0.207 5.207 22 C -0.094 4.094 23 N -0.122 5.122 24 H 0.301 0.699 25 N -0.087 5.087 26 C -0.059 4.059 27 C -0.180 4.180 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.249 0.751 38 H 0.172 0.828 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.512 -26.733 -8.321 28.359 hybrid contribution 2.325 1.230 -0.828 2.758 sum 6.837 -25.503 -9.149 27.943 Atomic orbital electron populations 1.70020 1.05934 1.27427 1.46906 1.24993 0.95035 0.99024 0.94574 0.86170 0.79416 0.81589 0.78330 1.20289 1.20763 1.19712 1.22870 0.94905 0.91697 1.58872 0.90961 1.85378 1.04955 0.96287 1.96709 1.23539 1.06535 0.95516 1.04866 1.20299 0.86583 0.86254 0.74952 1.90696 1.15299 1.85565 1.47506 1.46090 1.09847 1.05235 1.77696 1.20908 0.97733 0.80851 0.96551 1.22205 0.98916 0.94316 1.02509 1.21647 1.01042 0.95593 0.82286 1.47868 1.45783 1.22094 1.16391 1.16319 0.80055 0.81659 0.82204 1.90829 1.37416 1.48595 1.62805 1.23804 0.97753 0.93255 0.97747 1.70854 1.19947 1.27442 1.02447 1.26867 0.95731 0.87763 0.98989 1.45250 1.30110 1.24922 1.11895 0.69912 1.74381 1.19752 1.21332 0.93277 1.22984 0.91109 0.88962 1.02862 1.22222 1.02234 0.96428 0.97148 0.92202 0.89293 0.89304 0.76937 0.89183 0.89614 0.90911 0.90485 0.88371 0.75094 0.82806 0.91169 0.89617 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.68 7.81 -10.99 -0.09 9.60 16 12 O -0.52 -11.35 15.53 5.56 0.09 -11.27 16 13 N -0.74 -9.56 5.08 -53.77 -0.27 -9.83 16 14 C 0.14 1.67 2.42 -67.89 -0.16 1.50 16 15 C -0.14 -1.25 5.55 -26.61 -0.15 -1.40 16 16 C 0.12 1.09 6.43 -3.71 -0.02 1.07 16 17 N -0.59 -6.28 2.98 -174.13 -0.52 -6.80 16 18 C 0.61 7.65 7.71 -12.32 -0.09 7.55 16 19 O -0.52 -7.92 16.51 5.31 0.09 -7.83 16 20 C 0.15 1.67 7.72 -156.36 -1.21 0.46 16 21 N -0.48 -4.02 7.71 -12.37 -0.10 -4.11 16 22 C 0.20 0.82 13.14 -90.48 -1.19 -0.37 16 23 N -0.40 -1.71 6.93 29.57 0.20 -1.50 16 24 H 0.45 -0.06 8.96 -190.21 -1.70 -1.77 16 25 N -0.25 -2.38 12.30 32.07 0.39 -1.98 16 26 C 0.06 0.64 6.27 -3.93 -0.02 0.62 16 27 C -0.14 -1.58 5.63 -26.83 -0.15 -1.73 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.40 4.09 8.60 -40.82 -0.35 3.74 16 32 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.95 7.02 -51.93 -0.36 0.58 16 37 H 0.23 -0.26 8.06 -52.48 -0.42 -0.68 16 38 H 0.16 1.54 3.66 -80.06 -0.29 1.24 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -39.58 360.67 -10.30 -49.88 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.46 Total: -0.70 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.67 Total: 1.54 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.45 Total: -49.57 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.17 Total: -19.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -39.58 -10.30 -49.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492118083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.457 kcal (2) G-P(sol) polarization free energy of solvation -39.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds