Wall clock time and date at job start Tue Mar 31 2020 22:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86794 * 120.00383 * 2 1 4 4 H 1.48503 * 109.47491 * 239.99981 * 3 2 1 5 5 H 1.48500 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47480 * 119.99712 * 3 2 1 7 7 C 1.38803 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00184 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99975 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47227 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00211 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00180 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00192 * 180.02562 * 13 11 10 15 15 H 1.08995 * 110.88358 * 328.87772 * 14 13 11 16 16 C 1.55158 * 111.00344 * 92.80131 * 14 13 11 17 17 C 1.54337 * 103.01725 * 153.38447 * 16 14 13 18 18 N 1.47027 * 107.26649 * 338.13794 * 17 16 14 19 19 C 1.34771 * 125.65007 * 178.85064 * 18 17 16 20 20 O 1.21284 * 120.00208 * 179.69268 * 19 18 17 21 21 C 1.50697 * 119.99918 * 359.69616 * 19 18 17 22 22 N 1.46504 * 109.47119 * 179.97438 * 21 19 18 23 23 N 1.28597 * 124.61743 * 90.00227 * 22 21 19 24 24 C 1.31384 * 108.71793 * 179.97438 * 23 22 21 25 25 C 1.39673 * 105.89841 * 359.97438 * 24 23 22 26 26 N 1.28596 * 124.61801 * 269.97468 * 22 21 19 27 27 C 1.47432 * 108.70171 * 358.59098 * 18 17 16 28 28 H 0.97002 * 119.99696 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47387 * 59.99801 * 10 9 7 30 30 H 1.09001 * 109.47404 * 299.99755 * 10 9 7 31 31 H 0.96996 * 119.99936 * 359.97438 * 13 11 10 32 32 H 1.08997 * 110.71821 * 271.93827 * 16 14 13 33 33 H 1.09000 * 110.72165 * 35.04275 * 16 14 13 34 34 H 1.09000 * 109.98862 * 218.66852 * 17 16 14 35 35 H 1.08993 * 109.78278 * 97.49595 * 17 16 14 36 36 H 1.08995 * 109.47372 * 59.99684 * 21 19 18 37 37 H 1.09004 * 109.47047 * 299.99911 * 21 19 18 38 38 H 1.07994 * 127.04789 * 179.97438 * 24 23 22 39 39 H 1.07997 * 127.05071 * 179.97438 * 25 24 23 40 40 H 1.08995 * 110.37013 * 143.19578 * 27 18 17 41 41 H 1.09003 * 110.36138 * 265.51619 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 2.3302 -7.7152 0.0008 15 1 1.3777 -7.7734 0.5275 16 6 2.2009 -8.2607 -1.4460 17 6 2.3401 -9.7860 -1.2561 18 7 3.0357 -10.0052 0.0205 19 6 3.3304 -11.2052 0.5585 20 8 3.9148 -11.2671 1.6195 21 6 2.9339 -12.4701 -0.1582 22 7 3.3645 -13.6308 0.6252 23 7 2.6524 -14.2086 1.5268 24 6 3.3388 -15.2103 2.0283 25 6 4.5616 -15.2122 1.3533 26 7 4.5058 -14.2109 0.5046 27 6 3.3630 -8.6948 0.6116 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7314 0.8905 30 1 3.1244 -3.7315 -0.8895 31 1 3.8007 -6.1836 -0.0003 32 1 1.2276 -8.0094 -1.8673 33 1 3.0032 -7.8767 -2.0760 34 1 2.9224 -10.2116 -2.0734 35 1 1.3522 -10.2453 -1.2236 36 1 3.4099 -12.4969 -1.1383 37 1 1.8509 -12.4947 -0.2796 38 1 3.0224 -15.8924 2.8035 39 1 5.3847 -15.8958 1.4999 40 1 3.2571 -8.7305 1.6958 41 1 4.3755 -8.3977 0.3381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493221195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:08 Heat of formation + Delta-G solvation = 54.818761 kcal Electronic energy + Delta-G solvation = -25485.004960 eV Core-core repulsion = 21529.684822 eV Total energy + Delta-G solvation = -3955.320138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.88813 -40.70645 -39.35037 -37.70967 -34.45985 -34.07757 -32.74855 -32.46972 -31.43238 -29.87307 -29.20448 -27.67248 -25.52498 -24.11036 -23.23398 -22.33666 -21.60331 -20.65171 -19.92737 -18.28283 -17.99231 -17.75182 -17.16432 -16.47059 -16.43469 -15.86429 -15.54674 -15.18059 -15.00726 -14.83992 -14.69070 -14.61089 -14.00415 -13.89914 -13.49643 -13.33152 -13.12342 -12.77049 -12.65841 -12.51535 -12.12120 -11.98218 -11.73192 -11.22482 -11.13731 -11.08835 -11.06803 -10.80924 -10.74483 -10.65342 -9.87603 -9.69504 -9.55772 -9.27678 -9.12478 -9.06890 -8.30475 -6.55516 -6.25713 -3.97003 1.31321 1.72267 1.94147 2.17679 2.38183 2.91949 2.96334 3.20880 3.24742 3.27501 3.59279 3.68307 3.74530 4.09914 4.16553 4.26942 4.32807 4.39551 4.58859 4.70601 4.75431 4.77886 5.00482 5.05459 5.06702 5.09669 5.31496 5.38799 5.53650 5.54279 5.63442 5.69380 5.79824 5.83303 5.83410 6.06508 6.22982 6.42799 6.81342 7.46262 7.52136 7.55640 7.97000 8.30824 8.44975 9.19668 10.81622 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.044498 B = 0.001623 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.094230 B =17253.091134 C =17393.172506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.536 3.464 12 O -0.513 6.513 13 N -0.730 5.730 14 C 0.136 3.864 15 H 0.109 0.891 16 C -0.145 4.145 17 C 0.094 3.906 18 N -0.612 5.612 19 C 0.519 3.481 20 O -0.518 6.518 21 C 0.129 3.871 22 N -0.147 5.147 23 N -0.281 5.281 24 C -0.023 4.023 25 C -0.023 4.023 26 N -0.282 5.282 27 C 0.103 3.897 28 H 0.269 0.731 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.401 0.599 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.199 0.801 39 H 0.199 0.801 40 H 0.089 0.911 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.641 -28.542 -3.071 29.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.323 3.677 12 O -0.387 6.387 13 N -0.384 5.384 14 C 0.029 3.971 15 H 0.127 0.873 16 C -0.184 4.184 17 C -0.029 4.029 18 N -0.348 5.348 19 C 0.305 3.695 20 O -0.392 6.392 21 C 0.005 3.995 22 N -0.047 5.047 23 N -0.121 5.121 24 C -0.206 4.206 25 C -0.206 4.206 26 N -0.123 5.123 27 C -0.020 4.020 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.236 0.764 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.216 0.784 39 H 0.216 0.784 40 H 0.107 0.893 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.376 -27.757 -3.205 28.660 hybrid contribution 2.771 0.618 0.478 2.879 sum 9.147 -27.139 -2.726 28.769 Atomic orbital electron populations 1.70002 1.05959 1.27633 1.46648 1.24988 0.95031 0.99039 0.94448 0.86220 0.79243 0.81199 0.78817 1.19932 1.20783 1.19922 1.22824 0.94887 0.91620 1.59260 0.90931 1.85395 1.04719 0.96343 1.96749 1.23539 1.06758 0.95072 1.05106 1.20362 0.86473 0.86223 0.74656 1.90712 1.15314 1.85479 1.47157 1.45849 1.10145 1.04422 1.77994 1.21936 0.98181 0.81295 0.95642 0.87283 1.23108 1.04732 0.92539 0.98049 1.22256 0.97414 0.98040 0.85175 1.48233 1.58423 1.05053 1.23114 1.20079 0.79956 0.83674 0.85803 1.90821 1.40497 1.86158 1.21747 1.21619 1.04097 0.79573 0.94223 1.47303 1.07923 1.22807 1.26680 1.74071 1.24901 1.09003 1.04122 1.24823 0.93365 0.98646 1.03774 1.24813 1.00430 0.98667 0.96720 1.74046 1.05538 1.08988 1.23707 1.22432 0.98611 0.81243 0.99725 0.92082 0.89055 0.89055 0.76447 0.88673 0.89719 0.90433 0.90343 0.84403 0.84295 0.78402 0.78419 0.89292 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.71 13.22 55.49 0.73 -24.98 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -2.91 6.16 36.01 0.22 -2.68 16 11 C 0.54 9.04 7.85 -10.99 -0.09 8.96 16 12 O -0.51 -10.70 15.50 5.55 0.09 -10.61 16 13 N -0.73 -8.27 5.20 -51.73 -0.27 -8.54 16 14 C 0.14 1.33 3.43 -65.78 -0.23 1.10 16 15 H 0.11 1.30 7.54 -51.93 -0.39 0.91 16 16 C -0.15 -1.06 6.64 -24.89 -0.17 -1.22 16 17 C 0.09 0.48 6.49 -3.05 -0.02 0.46 16 18 N -0.61 -4.86 3.33 -170.51 -0.57 -5.43 16 19 C 0.52 5.14 7.92 -10.99 -0.09 5.06 16 20 O -0.52 -7.64 16.69 5.55 0.09 -7.55 16 21 C 0.13 0.88 6.21 -5.19 -0.03 0.85 16 22 N -0.15 -1.51 3.44 -11.66 -0.04 -1.55 16 23 N -0.28 -3.03 12.05 30.67 0.37 -2.66 16 24 C -0.02 -0.19 12.20 -17.21 -0.21 -0.40 16 25 C -0.02 -0.18 12.20 -17.21 -0.21 -0.39 16 26 N -0.28 -2.98 12.05 30.67 0.37 -2.61 16 27 C 0.10 0.90 6.55 -2.53 -0.02 0.88 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 30 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 31 H 0.40 3.42 8.57 -40.82 -0.35 3.07 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.20 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.20 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.09 0.92 8.04 -51.93 -0.42 0.50 16 41 H 0.08 0.60 8.00 -51.93 -0.42 0.18 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -39.91 373.06 -6.82 -46.73 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.35 Total: -0.61 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -0.63 Total: -0.08 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.60 Total: -45.77 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.18 Total: -18.16 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.91 -6.82 -46.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493221195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.550 kcal (2) G-P(sol) polarization free energy of solvation -39.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds