Wall clock time and date at job start Tue Mar 31 2020 22:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86794 * 120.00383 * 2 1 4 4 H 1.48503 * 109.47491 * 239.99981 * 3 2 1 5 5 H 1.48500 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47480 * 119.99712 * 3 2 1 7 7 C 1.38803 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00184 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99975 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47227 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00211 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00180 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00192 * 180.02562 * 13 11 10 15 15 H 1.08995 * 110.88358 * 328.87772 * 14 13 11 16 16 C 1.55158 * 111.00344 * 92.80131 * 14 13 11 17 17 C 1.54337 * 103.01725 * 153.38447 * 16 14 13 18 18 N 1.47027 * 107.26649 * 338.13794 * 17 16 14 19 19 C 1.34771 * 125.65007 * 178.85064 * 18 17 16 20 20 O 1.21284 * 120.00208 * 179.69268 * 19 18 17 21 21 C 1.50697 * 119.99918 * 359.69616 * 19 18 17 22 22 N 1.46504 * 109.47119 * 179.97438 * 21 19 18 23 23 N 1.28597 * 124.61743 * 90.00227 * 22 21 19 24 24 C 1.31384 * 108.71793 * 179.97438 * 23 22 21 25 25 C 1.39673 * 105.89841 * 359.97438 * 24 23 22 26 26 N 1.28596 * 124.61801 * 269.97468 * 22 21 19 27 27 C 1.47432 * 108.70171 * 358.59098 * 18 17 16 28 28 H 0.97002 * 119.99696 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47387 * 59.99801 * 10 9 7 30 30 H 1.09001 * 109.47404 * 299.99755 * 10 9 7 31 31 H 0.96996 * 119.99936 * 359.97438 * 13 11 10 32 32 H 1.08997 * 110.71821 * 271.93827 * 16 14 13 33 33 H 1.09000 * 110.72165 * 35.04275 * 16 14 13 34 34 H 1.09000 * 109.98862 * 218.66852 * 17 16 14 35 35 H 1.08993 * 109.78278 * 97.49595 * 17 16 14 36 36 H 1.08995 * 109.47372 * 59.99684 * 21 19 18 37 37 H 1.09004 * 109.47047 * 299.99911 * 21 19 18 38 38 H 1.07994 * 127.04789 * 179.97438 * 24 23 22 39 39 H 1.07997 * 127.05071 * 179.97438 * 25 24 23 40 40 H 1.08995 * 110.37013 * 143.19578 * 27 18 17 41 41 H 1.09003 * 110.36138 * 265.51619 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 2.3302 -7.7152 0.0008 15 1 1.3777 -7.7734 0.5275 16 6 2.2009 -8.2607 -1.4460 17 6 2.3401 -9.7860 -1.2561 18 7 3.0357 -10.0052 0.0205 19 6 3.3304 -11.2052 0.5585 20 8 3.9148 -11.2671 1.6195 21 6 2.9339 -12.4701 -0.1582 22 7 3.3645 -13.6308 0.6252 23 7 2.6524 -14.2086 1.5268 24 6 3.3388 -15.2103 2.0283 25 6 4.5616 -15.2122 1.3533 26 7 4.5058 -14.2109 0.5046 27 6 3.3630 -8.6948 0.6116 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7314 0.8905 30 1 3.1244 -3.7315 -0.8895 31 1 3.8007 -6.1836 -0.0003 32 1 1.2276 -8.0094 -1.8673 33 1 3.0032 -7.8767 -2.0760 34 1 2.9224 -10.2116 -2.0734 35 1 1.3522 -10.2453 -1.2236 36 1 3.4099 -12.4969 -1.1383 37 1 1.8509 -12.4947 -0.2796 38 1 3.0224 -15.8924 2.8035 39 1 5.3847 -15.8958 1.4999 40 1 3.2571 -8.7305 1.6958 41 1 4.3755 -8.3977 0.3381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493221195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:08 Heat of formation + Delta-G solvation = 23.024164 kcal Electronic energy + Delta-G solvation = -25486.383677 eV Core-core repulsion = 21529.684822 eV Total energy + Delta-G solvation = -3956.698855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.49657 -41.49490 -40.51854 -38.61490 -35.45795 -34.75906 -34.57905 -33.39816 -32.38315 -30.75781 -30.12282 -28.49996 -27.62847 -24.80673 -23.82767 -22.99884 -22.46779 -21.76405 -20.62471 -19.85901 -18.90129 -18.49602 -18.10031 -17.66342 -17.15491 -16.87484 -16.76887 -16.41678 -16.25063 -15.95454 -15.67657 -15.25791 -15.16829 -14.82088 -14.62063 -14.41524 -14.02116 -13.87618 -13.70701 -13.39032 -13.16796 -12.96321 -12.86206 -12.72127 -12.58988 -12.58326 -11.89122 -11.80719 -11.74234 -11.52999 -11.34012 -11.12648 -11.00786 -10.30653 -10.27638 -10.19411 -9.89848 -8.65889 -8.34435 -6.12137 0.67347 1.16238 1.24692 1.28040 1.43952 1.46207 1.55068 1.57208 1.61009 1.79232 2.27033 2.32576 2.99904 3.07952 3.27873 3.31061 3.42366 3.60424 3.91089 3.93077 3.93547 4.00888 4.14608 4.15848 4.21983 4.31496 4.51889 4.53060 4.58263 4.70677 4.75274 4.88231 5.05212 5.06714 5.08859 5.33842 5.41665 5.42312 5.64668 6.17090 6.19817 6.44347 6.77428 7.07189 7.19866 7.34861 8.74340 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.044498 B = 0.001623 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.094230 B =17253.091134 C =17393.172506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.541 3.459 12 O -0.560 6.560 13 N -0.704 5.704 14 C 0.133 3.867 15 H 0.084 0.916 16 C -0.139 4.139 17 C 0.095 3.905 18 N -0.607 5.607 19 C 0.517 3.483 20 O -0.577 6.577 21 C 0.126 3.874 22 N -0.160 5.160 23 N -0.315 5.315 24 C -0.025 4.025 25 C -0.024 4.024 26 N -0.311 5.311 27 C 0.108 3.892 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.419 0.581 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.171 0.829 37 H 0.166 0.834 38 H 0.230 0.770 39 H 0.231 0.769 40 H 0.068 0.932 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.818 -29.784 -4.289 31.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.327 3.673 12 O -0.437 6.437 13 N -0.358 5.358 14 C 0.027 3.973 15 H 0.102 0.898 16 C -0.178 4.178 17 C -0.026 4.026 18 N -0.342 5.342 19 C 0.305 3.695 20 O -0.456 6.456 21 C 0.003 3.997 22 N -0.059 5.059 23 N -0.155 5.155 24 C -0.208 4.208 25 C -0.207 4.207 26 N -0.151 5.151 27 C -0.015 4.015 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.256 0.744 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.189 0.811 37 H 0.183 0.817 38 H 0.246 0.754 39 H 0.248 0.752 40 H 0.086 0.914 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.586 -29.021 -4.465 30.592 hybrid contribution 2.145 0.866 0.887 2.477 sum 10.731 -28.155 -3.578 30.342 Atomic orbital electron populations 1.70170 1.07934 1.28651 1.47936 1.26096 0.95934 1.03247 0.93746 0.85029 0.77825 0.75847 0.79464 1.18590 1.20473 1.18830 1.23186 0.95382 0.92096 1.58952 0.89879 1.85554 1.10435 0.99146 1.97065 1.23381 1.03637 0.94237 1.06978 1.20002 0.86160 0.86481 0.74663 1.90705 1.17295 1.85944 1.49787 1.45519 1.10438 1.04071 1.75743 1.21973 0.97346 0.80267 0.97737 0.89788 1.23064 1.04794 0.94075 0.95868 1.22486 0.98952 0.96533 0.84649 1.48274 1.57836 1.04266 1.23784 1.20648 0.78964 0.84774 0.85164 1.90789 1.43387 1.87009 1.24375 1.21965 1.05978 0.77164 0.94556 1.47589 1.07833 1.23467 1.27045 1.74027 1.26154 1.10217 1.05107 1.25457 0.93226 0.98272 1.03876 1.25460 1.01241 0.98326 0.95695 1.73999 1.06116 1.10052 1.24973 1.22292 0.98981 0.81683 0.98566 0.92010 0.87325 0.86810 0.74354 0.89542 0.88436 0.86888 0.88384 0.81137 0.81684 0.75383 0.75222 0.91393 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.18 13.22 21.65 0.29 -54.89 16 2 C 0.01 0.82 5.49 84.86 0.47 1.29 16 3 Si 1.00 42.89 29.55 68.60 2.03 44.92 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.55 -30.65 9.50 67.96 0.65 -30.00 16 8 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 9 S -0.15 -8.02 20.57 -56.49 -1.16 -9.18 16 10 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16 11 C 0.54 18.04 7.85 87.66 0.69 18.73 16 12 O -0.56 -23.94 15.50 -3.04 -0.05 -23.99 16 13 N -0.70 -14.96 5.20 -435.96 -2.27 -17.23 16 14 C 0.13 2.46 3.43 46.38 0.16 2.62 16 15 H 0.08 2.04 7.54 -2.39 -0.02 2.03 16 16 C -0.14 -1.71 6.64 31.79 0.21 -1.49 16 17 C 0.10 0.66 6.49 86.73 0.56 1.22 16 18 N -0.61 -8.53 3.33 -811.77 -2.70 -11.22 16 19 C 0.52 9.67 7.92 87.66 0.69 10.36 16 20 O -0.58 -17.22 16.69 -3.04 -0.05 -17.27 16 21 C 0.13 1.47 6.21 85.63 0.53 2.00 16 22 N -0.16 -3.09 3.44 -190.80 -0.66 -3.74 16 23 N -0.31 -6.54 12.05 -56.87 -0.69 -7.22 16 24 C -0.03 -0.38 12.20 85.11 1.04 0.66 16 25 C -0.02 -0.35 12.20 85.11 1.04 0.69 16 26 N -0.31 -6.20 12.05 -56.87 -0.69 -6.88 16 27 C 0.11 1.78 6.55 86.85 0.57 2.35 16 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 31 H 0.42 6.08 8.57 -92.71 -0.79 5.29 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.17 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.17 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.23 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.23 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16 41 H 0.09 1.25 8.00 -2.39 -0.02 1.23 16 Total: -1.00 -92.05 373.06 1.38 -90.67 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.27 Total: 12.04 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 7.04 Total: 4.01 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -6.71 Total: -101.19 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -0.10 Total: -41.27 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.18 kcal Total: -92.05 1.38 -90.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493221195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.698 kcal (2) G-P(sol) polarization free energy of solvation -92.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds