Wall clock time and date at job start Tue Mar 31 2020 22:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48505 * 109.47320 * 269.99674 * 3 2 1 5 5 H 1.48493 * 109.47390 * 30.00051 * 3 2 1 6 6 H 1.48507 * 109.46983 * 150.00184 * 3 2 1 7 7 C 1.38794 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00388 * 179.97438 * 7 2 1 9 9 S 1.76208 * 120.00210 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99951 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47074 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99608 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99952 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99893 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.63553 * 31.86633 * 14 13 11 16 16 C 1.55153 * 110.72407 * 268.52784 * 14 13 11 17 17 C 1.55126 * 101.48646 * 205.96694 * 16 14 13 18 18 N 1.47435 * 104.71986 * 37.29532 * 17 16 14 19 19 C 1.34772 * 125.64654 * 155.81654 * 18 17 16 20 20 O 1.21281 * 119.99940 * 179.68955 * 19 18 17 21 21 C 1.50703 * 120.00069 * 359.69225 * 19 18 17 22 22 N 1.46506 * 109.46877 * 179.97438 * 21 19 18 23 23 N 1.28597 * 124.61896 * 269.69825 * 22 21 19 24 24 C 1.31384 * 108.71678 * 179.83279 * 23 22 21 25 25 C 1.39679 * 105.89906 * 0.41492 * 24 23 22 26 26 N 1.28602 * 124.61568 * 90.00023 * 22 21 19 27 27 C 1.47016 * 108.70217 * 335.54880 * 18 17 16 28 28 H 0.97006 * 119.99657 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47074 * 59.99548 * 10 9 7 30 30 H 1.08998 * 109.47455 * 299.99853 * 10 9 7 31 31 H 0.96994 * 120.00214 * 0.02562 * 13 11 10 32 32 H 1.09003 * 111.00267 * 324.20559 * 16 14 13 33 33 H 1.09002 * 111.00667 * 88.02129 * 16 14 13 34 34 H 1.08995 * 110.49787 * 278.45116 * 17 16 14 35 35 H 1.09001 * 110.34352 * 156.05381 * 17 16 14 36 36 H 1.09000 * 109.46978 * 60.00374 * 21 19 18 37 37 H 1.09000 * 109.46976 * 299.99619 * 21 19 18 38 38 H 1.07999 * 127.05003 * 180.15956 * 24 23 22 39 39 H 1.07996 * 127.04852 * 179.77067 * 25 24 23 40 40 H 1.09000 * 109.88031 * 120.70389 * 27 18 17 41 41 H 1.08995 * 109.88887 * 241.71781 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5022 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 2.3301 -7.7152 0.0019 15 1 1.3835 -7.7713 -0.5356 16 6 2.1740 -8.2417 1.4530 17 6 2.3056 -9.7729 1.2418 18 7 3.3281 -9.9195 0.1898 19 6 4.0988 -11.0068 -0.0104 20 8 4.9072 -11.0189 -0.9143 21 6 3.9561 -12.2075 0.8891 22 7 4.8971 -13.2482 0.4673 23 7 4.6312 -14.1701 -0.3889 24 6 5.6940 -14.9284 -0.5357 25 6 6.6619 -14.4009 0.3222 26 7 6.0997 -13.3674 0.9069 27 6 3.3631 -8.6856 -0.6087 28 1 -0.4850 0.8401 0.0004 29 1 3.1243 -3.7313 0.8905 30 1 3.1243 -3.7315 -0.8894 31 1 3.8006 -6.1836 0.0004 32 1 2.9700 -7.8625 2.0940 33 1 1.1945 -7.9871 1.8578 34 1 1.3571 -10.1954 0.9105 35 1 2.6361 -10.2553 2.1618 36 1 2.9378 -12.5910 0.8242 37 1 4.1707 -11.9184 1.9179 38 1 5.7967 -15.7864 -1.1835 39 1 7.6665 -14.7672 0.4734 40 1 4.3584 -8.2434 -0.5643 41 1 3.1014 -8.9060 -1.6436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493221196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:11 Heat of formation + Delta-G solvation = 55.440265 kcal Electronic energy + Delta-G solvation = -25502.670679 eV Core-core repulsion = 21547.377491 eV Total energy + Delta-G solvation = -3955.293188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.89780 -40.71788 -39.35669 -37.70313 -34.46079 -34.07995 -32.75932 -32.47017 -31.41540 -29.87610 -29.20835 -27.67066 -25.52631 -24.11312 -23.24451 -22.40437 -21.55106 -20.62165 -19.99725 -18.28132 -18.01625 -17.75160 -17.09772 -16.48280 -16.36109 -15.92700 -15.60604 -15.25948 -15.01940 -14.84059 -14.70854 -14.57381 -14.00870 -13.88997 -13.45823 -13.29014 -13.08177 -12.71679 -12.65278 -12.52082 -12.14646 -11.99293 -11.76874 -11.28893 -11.15029 -11.09539 -11.06620 -10.80229 -10.74625 -10.66346 -9.86682 -9.70049 -9.56054 -9.28875 -9.12116 -9.06107 -8.30213 -6.55493 -6.26030 -3.97147 1.30493 1.71133 1.93986 2.16607 2.38889 2.92307 2.95497 3.19758 3.24927 3.28515 3.59803 3.66236 3.73444 4.07123 4.16270 4.23325 4.31051 4.39681 4.64879 4.69705 4.75532 4.80605 4.97270 5.01526 5.04924 5.09531 5.30583 5.40492 5.50409 5.58643 5.62763 5.68048 5.79995 5.82355 5.83158 6.06964 6.22077 6.43396 6.80695 7.45950 7.52262 7.55932 7.95890 8.30995 8.44945 9.19621 10.81361 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.038884 B = 0.001649 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.921234 B =16979.487496 C =17350.236238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.537 3.463 12 O -0.514 6.514 13 N -0.731 5.731 14 C 0.138 3.862 15 H 0.110 0.890 16 C -0.145 4.145 17 C 0.092 3.908 18 N -0.613 5.613 19 C 0.518 3.482 20 O -0.518 6.518 21 C 0.129 3.871 22 N -0.147 5.147 23 N -0.282 5.282 24 C -0.023 4.023 25 C -0.023 4.023 26 N -0.282 5.282 27 C 0.104 3.896 28 H 0.269 0.731 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.401 0.599 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.199 0.801 39 H 0.199 0.801 40 H 0.077 0.923 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.708 -28.282 3.988 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.323 3.677 12 O -0.387 6.387 13 N -0.386 5.386 14 C 0.031 3.969 15 H 0.128 0.872 16 C -0.185 4.185 17 C -0.030 4.030 18 N -0.348 5.348 19 C 0.304 3.696 20 O -0.393 6.393 21 C 0.005 3.995 22 N -0.047 5.047 23 N -0.122 5.122 24 C -0.206 4.206 25 C -0.206 4.206 26 N -0.122 5.122 27 C -0.019 4.019 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.235 0.765 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.216 0.784 39 H 0.216 0.784 40 H 0.095 0.905 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.117 -27.577 3.885 28.744 hybrid contribution 3.093 0.704 -0.300 3.187 sum 10.211 -26.873 3.585 28.970 Atomic orbital electron populations 1.70016 1.05952 1.27512 1.46773 1.24989 0.95033 0.99046 0.94459 0.86164 0.79407 0.81521 0.78389 1.20244 1.20722 1.19694 1.22865 0.94924 0.91605 1.59103 0.90887 1.85385 1.04739 0.96367 1.96744 1.23541 1.06749 0.95113 1.05104 1.20352 0.86471 0.86226 0.74651 1.90708 1.15285 1.85508 1.47222 1.45967 1.10131 1.04490 1.77976 1.21828 0.97781 0.81322 0.95955 0.87180 1.23301 1.04646 0.92859 0.97657 1.22607 0.91717 0.98057 0.90662 1.48291 1.38241 1.14860 1.33454 1.20082 0.80931 0.83098 0.85521 1.90819 1.35320 1.81053 1.32088 1.21623 0.93442 0.84449 1.00006 1.47301 1.08447 1.20807 1.28156 1.74058 1.27715 1.00991 1.09429 1.24821 0.89804 1.02587 1.03400 1.24820 1.02392 0.94741 0.98667 1.74058 0.95133 1.19845 1.23161 1.22156 1.00200 0.83921 0.95601 0.92144 0.89085 0.89063 0.76465 0.89754 0.88467 0.89944 0.89879 0.84336 0.84395 0.78406 0.78410 0.90475 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -2.93 6.16 36.01 0.22 -2.70 16 11 C 0.54 9.03 7.85 -10.98 -0.09 8.95 16 12 O -0.51 -10.60 15.51 5.55 0.09 -10.52 16 13 N -0.73 -8.38 5.18 -52.03 -0.27 -8.65 16 14 C 0.14 1.31 3.31 -66.10 -0.22 1.09 16 15 H 0.11 1.22 7.55 -51.93 -0.39 0.83 16 16 C -0.15 -1.07 6.78 -24.47 -0.17 -1.24 16 17 C 0.09 0.46 6.70 -2.41 -0.02 0.44 16 18 N -0.61 -4.79 3.32 -170.38 -0.57 -5.36 16 19 C 0.52 5.06 7.92 -10.99 -0.09 4.97 16 20 O -0.52 -7.59 16.76 5.56 0.09 -7.50 16 21 C 0.13 0.86 6.02 -5.19 -0.03 0.83 16 22 N -0.15 -1.49 3.44 -11.66 -0.04 -1.53 16 23 N -0.28 -2.97 12.05 30.68 0.37 -2.60 16 24 C -0.02 -0.18 12.20 -17.21 -0.21 -0.39 16 25 C -0.02 -0.18 12.20 -17.21 -0.21 -0.39 16 26 N -0.28 -2.97 12.05 30.67 0.37 -2.60 16 27 C 0.10 0.92 6.62 -3.07 -0.02 0.90 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 30 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 31 H 0.40 3.61 8.37 -40.82 -0.34 3.27 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.20 7.48 -51.93 -0.39 -0.19 16 36 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.14 0.52 7.85 -51.93 -0.41 0.11 16 38 H 0.20 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.20 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.08 0.69 7.72 -51.93 -0.40 0.29 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -39.84 371.90 -6.76 -46.60 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.28 Total: -0.56 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -0.63 Total: -0.23 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.60 Total: -45.71 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.18 Total: -18.01 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -39.84 -6.76 -46.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493221196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.044 kcal (2) G-P(sol) polarization free energy of solvation -39.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds