Wall clock time and date at job start Tue Mar 31 2020 22:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48505 * 109.47320 * 269.99674 * 3 2 1 5 5 H 1.48493 * 109.47390 * 30.00051 * 3 2 1 6 6 H 1.48507 * 109.46983 * 150.00184 * 3 2 1 7 7 C 1.38794 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00388 * 179.97438 * 7 2 1 9 9 S 1.76208 * 120.00210 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99951 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47074 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99608 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99952 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99893 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.63553 * 31.86633 * 14 13 11 16 16 C 1.55153 * 110.72407 * 268.52784 * 14 13 11 17 17 C 1.55126 * 101.48646 * 205.96694 * 16 14 13 18 18 N 1.47435 * 104.71986 * 37.29532 * 17 16 14 19 19 C 1.34772 * 125.64654 * 155.81654 * 18 17 16 20 20 O 1.21281 * 119.99940 * 179.68955 * 19 18 17 21 21 C 1.50703 * 120.00069 * 359.69225 * 19 18 17 22 22 N 1.46506 * 109.46877 * 179.97438 * 21 19 18 23 23 N 1.28597 * 124.61896 * 269.69825 * 22 21 19 24 24 C 1.31384 * 108.71678 * 179.83279 * 23 22 21 25 25 C 1.39679 * 105.89906 * 0.41492 * 24 23 22 26 26 N 1.28602 * 124.61568 * 90.00023 * 22 21 19 27 27 C 1.47016 * 108.70217 * 335.54880 * 18 17 16 28 28 H 0.97006 * 119.99657 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47074 * 59.99548 * 10 9 7 30 30 H 1.08998 * 109.47455 * 299.99853 * 10 9 7 31 31 H 0.96994 * 120.00214 * 0.02562 * 13 11 10 32 32 H 1.09003 * 111.00267 * 324.20559 * 16 14 13 33 33 H 1.09002 * 111.00667 * 88.02129 * 16 14 13 34 34 H 1.08995 * 110.49787 * 278.45116 * 17 16 14 35 35 H 1.09001 * 110.34352 * 156.05381 * 17 16 14 36 36 H 1.09000 * 109.46978 * 60.00374 * 21 19 18 37 37 H 1.09000 * 109.46976 * 299.99619 * 21 19 18 38 38 H 1.07999 * 127.05003 * 180.15956 * 24 23 22 39 39 H 1.07996 * 127.04852 * 179.77067 * 25 24 23 40 40 H 1.09000 * 109.88031 * 120.70389 * 27 18 17 41 41 H 1.08995 * 109.88887 * 241.71781 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5022 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 2.3301 -7.7152 0.0019 15 1 1.3835 -7.7713 -0.5356 16 6 2.1740 -8.2417 1.4530 17 6 2.3056 -9.7729 1.2418 18 7 3.3281 -9.9195 0.1898 19 6 4.0988 -11.0068 -0.0104 20 8 4.9072 -11.0189 -0.9143 21 6 3.9561 -12.2075 0.8891 22 7 4.8971 -13.2482 0.4673 23 7 4.6312 -14.1701 -0.3889 24 6 5.6940 -14.9284 -0.5357 25 6 6.6619 -14.4009 0.3222 26 7 6.0997 -13.3674 0.9069 27 6 3.3631 -8.6856 -0.6087 28 1 -0.4850 0.8401 0.0004 29 1 3.1243 -3.7313 0.8905 30 1 3.1243 -3.7315 -0.8894 31 1 3.8006 -6.1836 0.0004 32 1 2.9700 -7.8625 2.0940 33 1 1.1945 -7.9871 1.8578 34 1 1.3571 -10.1954 0.9105 35 1 2.6361 -10.2553 2.1618 36 1 2.9378 -12.5910 0.8242 37 1 4.1707 -11.9184 1.9179 38 1 5.7967 -15.7864 -1.1835 39 1 7.6665 -14.7672 0.4734 40 1 4.3584 -8.2434 -0.5643 41 1 3.1014 -8.9060 -1.6436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493221196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:11 Heat of formation + Delta-G solvation = 23.845215 kcal Electronic energy + Delta-G solvation = -25504.040743 eV Core-core repulsion = 21547.377491 eV Total energy + Delta-G solvation = -3956.663252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.49295 -41.50433 -40.51578 -38.60763 -35.44646 -34.75516 -34.58321 -33.39531 -32.37002 -30.74566 -30.13809 -28.49710 -27.63355 -24.79824 -23.82520 -23.05418 -22.41851 -21.74539 -20.66711 -19.86205 -18.89214 -18.50694 -18.09574 -17.52335 -17.14371 -16.90254 -16.87175 -16.38745 -16.27758 -15.97494 -15.72828 -15.25864 -15.16275 -14.80589 -14.60655 -14.42841 -14.08797 -13.73246 -13.60109 -13.35273 -13.16782 -13.01693 -12.89493 -12.72883 -12.58299 -12.57592 -11.97740 -11.80686 -11.73096 -11.52130 -11.33595 -11.14566 -10.99712 -10.30170 -10.27949 -10.19564 -9.90899 -8.65927 -8.35131 -6.12528 0.67736 1.16921 1.25737 1.27339 1.41982 1.45936 1.55627 1.57369 1.61165 1.80084 2.26081 2.31265 2.99299 3.07339 3.28103 3.30907 3.42664 3.56697 3.91398 3.93129 3.96152 4.02113 4.11652 4.15334 4.24826 4.30633 4.50493 4.52428 4.58410 4.68493 4.72274 4.88443 5.05168 5.06061 5.10745 5.34001 5.41557 5.42169 5.65185 6.17117 6.19587 6.42584 6.77922 7.06758 7.18891 7.35042 8.73886 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.038884 B = 0.001649 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.921234 B =16979.487496 C =17350.236238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.146 6.146 10 C -0.132 4.132 11 C 0.542 3.458 12 O -0.557 6.557 13 N -0.707 5.707 14 C 0.136 3.864 15 H 0.094 0.906 16 C -0.141 4.141 17 C 0.095 3.905 18 N -0.607 5.607 19 C 0.517 3.483 20 O -0.577 6.577 21 C 0.126 3.874 22 N -0.159 5.159 23 N -0.313 5.313 24 C -0.025 4.025 25 C -0.025 4.025 26 N -0.312 5.312 27 C 0.110 3.890 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.416 0.584 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.230 0.770 39 H 0.231 0.769 40 H 0.077 0.923 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.589 -29.564 5.085 32.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.081 5.919 10 C -0.284 4.284 11 C 0.328 3.672 12 O -0.435 6.435 13 N -0.361 5.361 14 C 0.030 3.970 15 H 0.112 0.888 16 C -0.180 4.180 17 C -0.026 4.026 18 N -0.341 5.341 19 C 0.304 3.696 20 O -0.456 6.456 21 C 0.003 3.997 22 N -0.059 5.059 23 N -0.153 5.153 24 C -0.208 4.208 25 C -0.208 4.208 26 N -0.153 5.153 27 C -0.014 4.014 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.253 0.747 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.138 0.862 36 H 0.186 0.814 37 H 0.187 0.813 38 H 0.247 0.753 39 H 0.247 0.753 40 H 0.095 0.905 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.014 -28.886 5.012 30.672 hybrid contribution 2.569 0.964 -0.667 2.824 sum 11.582 -27.922 4.345 30.540 Atomic orbital electron populations 1.70175 1.07893 1.28592 1.47983 1.26084 0.95942 1.03206 0.93758 0.84984 0.78238 0.76225 0.78734 1.19457 1.20266 1.18271 1.23216 0.95359 0.92157 1.58865 0.89990 1.85518 1.10298 0.99043 1.97050 1.23389 1.03691 0.94442 1.06847 1.19955 0.86170 0.86388 0.74693 1.90700 1.17114 1.85926 1.49741 1.45677 1.10322 1.04316 1.75783 1.21908 0.97181 0.80036 0.97899 0.88772 1.23257 1.04563 0.94566 0.95616 1.22834 0.91867 0.96495 0.91417 1.48321 1.38223 1.14006 1.33540 1.20657 0.79939 0.83887 0.85093 1.90788 1.37883 1.82194 1.34689 1.21975 0.94585 0.82715 1.00421 1.47588 1.08710 1.21299 1.28331 1.74015 1.29106 1.01935 1.10289 1.25459 0.89114 1.02937 1.03284 1.25457 1.03610 0.93879 0.97845 1.74011 0.95814 1.21064 1.24364 1.21981 0.99735 0.84408 0.95301 0.91990 0.87072 0.87391 0.74664 0.89189 0.89033 0.88238 0.86155 0.81436 0.81312 0.75328 0.75312 0.90452 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.06 13.22 21.65 0.29 -54.77 16 2 C 0.02 0.84 5.49 84.86 0.47 1.31 16 3 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.55 -30.72 9.50 67.95 0.65 -30.07 16 8 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 9 S -0.15 -7.85 20.57 -56.49 -1.16 -9.02 16 10 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 11 C 0.54 18.04 7.85 87.66 0.69 18.73 16 12 O -0.56 -23.46 15.51 -3.04 -0.05 -23.51 16 13 N -0.71 -15.33 5.18 -436.91 -2.26 -17.59 16 14 C 0.14 2.45 3.31 46.18 0.15 2.60 16 15 H 0.09 2.08 7.55 -2.39 -0.02 2.06 16 16 C -0.14 -1.77 6.78 32.06 0.22 -1.56 16 17 C 0.10 0.65 6.70 86.93 0.58 1.23 16 18 N -0.61 -8.33 3.32 -811.37 -2.70 -11.03 16 19 C 0.52 9.39 7.92 87.66 0.69 10.08 16 20 O -0.58 -16.91 16.76 -3.03 -0.05 -16.96 16 21 C 0.13 1.40 6.02 85.63 0.52 1.91 16 22 N -0.16 -3.01 3.44 -190.79 -0.66 -3.66 16 23 N -0.31 -6.25 12.05 -56.86 -0.69 -6.93 16 24 C -0.02 -0.36 12.20 85.11 1.04 0.68 16 25 C -0.02 -0.36 12.20 85.11 1.04 0.68 16 26 N -0.31 -6.19 12.05 -56.87 -0.69 -6.87 16 27 C 0.11 1.82 6.62 86.73 0.57 2.40 16 28 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 29 H 0.11 3.69 8.14 -2.40 -0.02 3.68 16 30 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 31 H 0.42 6.65 8.37 -92.71 -0.78 5.88 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.12 0.02 7.48 -2.39 -0.02 0.00 16 36 H 0.17 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.17 0.70 7.85 -2.39 -0.02 0.68 16 38 H 0.23 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.23 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.08 1.30 7.72 -2.39 -0.02 1.29 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -91.08 371.90 1.41 -89.67 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.30 Total: 12.13 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 7.05 Total: 3.49 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -6.70 Total: -100.86 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -0.10 Total: -40.47 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.16 Total: -9.02 kcal Total: -91.08 1.41 -89.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493221196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.512 kcal (2) G-P(sol) polarization free energy of solvation -91.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds