Wall clock time and date at job start Tue Mar 31 2020 22:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 120.00189 * 2 1 4 4 H 1.48501 * 109.46962 * 269.99315 * 3 2 1 5 5 H 1.48500 * 109.47244 * 29.99366 * 3 2 1 6 6 H 1.48504 * 109.47318 * 149.99270 * 3 2 1 7 7 C 1.38800 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99887 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99947 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47177 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99626 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00164 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.64720 * 359.97438 * 13 11 10 15 15 C 1.54322 * 107.27186 * 178.96001 * 14 13 11 16 16 C 1.55161 * 102.94310 * 337.81001 * 15 14 13 17 17 H 1.09001 * 110.99802 * 277.38630 * 16 15 14 18 18 N 1.46497 * 111.00422 * 153.57374 * 16 15 14 19 19 C 1.34777 * 119.99525 * 154.99667 * 18 16 15 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 16 22 22 N 1.46499 * 109.47257 * 180.27849 * 21 19 18 23 23 C 1.34436 * 126.82409 * 124.99671 * 22 21 19 24 24 N 1.30832 * 108.07378 * 179.97438 * 23 22 21 25 25 C 1.33237 * 109.83266 * 359.97438 * 24 23 22 26 26 N 1.30712 * 108.94749 * 359.75311 * 25 24 23 27 27 C 1.47426 * 125.65127 * 179.97438 * 13 11 10 28 28 H 0.97002 * 119.99937 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47361 * 59.99908 * 10 9 7 30 30 H 1.09001 * 109.46883 * 299.99581 * 10 9 7 31 31 H 1.09006 * 109.88340 * 59.54140 * 14 13 11 32 32 H 1.09001 * 109.88286 * 298.37781 * 14 13 11 33 33 H 1.09002 * 110.72278 * 219.44386 * 15 14 13 34 34 H 1.08998 * 110.87100 * 96.23964 * 15 14 13 35 35 H 0.97000 * 120.00580 * 335.00413 * 18 16 15 36 36 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 37 37 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 38 38 H 1.07994 * 125.96073 * 359.97438 * 23 22 21 39 39 H 1.08007 * 125.53130 * 180.02562 * 25 24 23 40 40 H 1.08998 * 110.36647 * 85.26923 * 27 13 11 41 41 H 1.08995 * 110.36399 * 322.94853 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4402 0.7002 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0021 13 7 2.8439 -6.3432 0.0008 14 6 4.3109 -6.2452 -0.0008 15 6 4.8663 -7.6847 0.0260 16 6 3.6849 -8.5022 0.6122 17 1 3.6718 -8.4440 1.7006 18 7 3.7373 -9.8959 0.1642 19 6 3.1592 -10.8635 0.9032 20 8 2.5953 -10.5802 1.9389 21 6 3.2077 -12.2964 0.4392 22 7 2.5080 -13.1466 1.4055 23 6 1.4949 -13.9924 1.1493 24 7 1.1490 -14.5640 2.2742 25 6 1.9153 -14.1111 3.2657 26 7 2.7667 -13.2451 2.7824 27 6 2.4654 -7.7680 0.0018 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7314 0.8904 30 1 3.1243 -3.7314 -0.8895 31 1 4.6471 -5.7016 0.8822 32 1 4.6474 -5.7348 -0.9033 33 1 5.7396 -7.7492 0.6752 34 1 5.1095 -8.0259 -0.9802 35 1 4.1881 -10.1225 -0.6643 36 1 2.7248 -12.3797 -0.5345 37 1 4.2463 -12.6172 0.3582 38 1 1.0451 -14.1691 0.1835 39 1 1.8472 -14.4141 4.3002 40 1 2.2854 -8.1134 -1.0162 41 1 1.5805 -7.9248 0.6185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493383705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:10 Heat of formation + Delta-G solvation = 38.257290 kcal Electronic energy + Delta-G solvation = -25601.240444 eV Core-core repulsion = 21645.202146 eV Total energy + Delta-G solvation = -3956.038297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.42936 -40.55653 -39.44681 -37.38919 -34.65442 -34.46905 -32.44818 -31.55745 -31.27307 -29.79207 -28.99445 -27.46707 -25.50628 -23.76011 -22.80992 -22.35268 -21.53214 -21.06576 -19.44860 -18.11267 -17.95170 -17.62937 -16.93439 -16.60098 -16.20934 -15.63863 -15.54155 -15.04880 -14.95980 -14.82024 -14.51352 -14.24483 -14.06981 -13.84226 -13.71312 -13.45831 -12.99038 -12.73099 -12.57967 -12.25926 -12.12348 -11.98660 -11.81536 -11.24354 -11.08009 -11.04083 -10.79524 -10.76479 -10.38018 -10.13225 -9.98700 -9.84776 -9.70973 -9.44463 -9.08459 -8.60706 -8.25916 -6.52734 -6.23323 -3.94451 1.21422 1.71771 1.99374 2.41910 2.66059 2.92783 3.00628 3.20820 3.24457 3.28970 3.57093 3.84526 3.94739 3.95405 4.14577 4.18613 4.26078 4.33167 4.49612 4.54762 4.84220 4.84513 4.97295 5.00817 5.11780 5.30573 5.41772 5.52361 5.55743 5.60476 5.71932 5.81255 5.87781 5.89193 6.06881 6.09504 6.30384 6.32488 6.84898 7.55445 7.58017 7.61049 7.72038 8.33257 8.48593 9.21758 10.84106 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028882 B = 0.001798 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.224936 B =15569.295216 C =16095.005246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.512 6.512 13 N -0.626 5.626 14 C 0.104 3.896 15 C -0.136 4.136 16 C 0.133 3.867 17 H 0.110 0.890 18 N -0.717 5.717 19 C 0.500 3.500 20 O -0.500 6.500 21 C 0.113 3.887 22 N -0.373 5.373 23 C 0.257 3.743 24 N -0.543 5.543 25 C 0.195 3.805 26 N -0.291 5.291 27 C 0.099 3.901 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.404 0.596 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.220 0.780 39 H 0.217 0.783 40 H 0.067 0.933 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.776 -27.769 -3.448 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.338 3.662 12 O -0.385 6.385 13 N -0.365 5.365 14 C -0.020 4.020 15 C -0.174 4.174 16 C 0.027 3.973 17 H 0.127 0.873 18 N -0.371 5.371 19 C 0.283 3.717 20 O -0.372 6.372 21 C -0.014 4.014 22 N -0.165 5.165 23 C -0.040 4.040 24 N -0.270 5.270 25 C -0.108 4.108 26 N -0.117 5.117 27 C -0.025 4.025 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.239 0.761 36 H 0.151 0.849 37 H 0.138 0.862 38 H 0.236 0.764 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.655 -27.494 -2.231 29.945 hybrid contribution 2.218 1.285 -0.763 2.675 sum 13.873 -26.208 -2.994 29.804 Atomic orbital electron populations 1.70018 1.05960 1.27491 1.46743 1.25000 0.95037 0.99046 0.94516 0.86159 0.79407 0.81538 0.78336 1.20266 1.20725 1.19690 1.22851 0.94887 0.91565 1.59078 0.90902 1.85441 1.04862 0.96363 1.96720 1.23505 1.06546 0.94773 1.04859 1.20074 0.85662 0.85421 0.75063 1.90724 1.14931 1.85042 1.47833 1.48395 1.06483 1.05399 1.76199 1.21965 0.80577 0.96606 1.02849 1.22926 0.97792 0.94326 1.02350 1.22140 0.94955 0.79280 1.00917 0.87253 1.45723 1.58224 1.06604 1.26539 1.20498 0.79401 0.86965 0.84857 1.90866 1.41035 1.82528 1.22801 1.21547 1.00617 0.88023 0.91176 1.49981 1.27507 1.32197 1.06825 1.26117 0.88474 0.89283 1.00155 1.70542 1.28737 1.29469 0.98237 1.26052 0.90980 0.93251 1.00497 1.78195 1.24659 1.21102 0.87780 1.22445 0.98110 0.81003 1.00990 0.92149 0.89192 0.89222 0.90737 0.90666 0.89121 0.89815 0.76132 0.84924 0.86183 0.76364 0.76635 0.91475 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -2.97 5.35 36.01 0.19 -2.78 16 11 C 0.55 10.60 7.87 -10.99 -0.09 10.52 16 12 O -0.51 -12.07 16.12 5.55 0.09 -11.98 16 13 N -0.63 -8.71 3.33 -170.54 -0.57 -9.28 16 14 C 0.10 0.96 6.49 -3.07 -0.02 0.94 16 15 C -0.14 -0.77 6.60 -24.90 -0.16 -0.94 16 16 C 0.13 1.08 3.42 -65.80 -0.23 0.85 16 17 H 0.11 1.16 7.54 -51.93 -0.39 0.77 16 18 N -0.72 -3.71 5.20 -51.74 -0.27 -3.98 16 19 C 0.50 3.84 7.87 -10.98 -0.09 3.75 16 20 O -0.50 -6.83 15.40 5.55 0.09 -6.75 16 21 C 0.11 0.42 7.03 -5.19 -0.04 0.38 16 22 N -0.37 -2.94 3.40 -63.81 -0.22 -3.16 16 23 C 0.26 1.78 12.63 -90.65 -1.14 0.63 16 24 N -0.54 -5.37 11.19 -15.83 -0.18 -5.55 16 25 C 0.20 1.92 13.03 -91.82 -1.20 0.72 16 26 N -0.29 -3.24 11.84 29.29 0.35 -2.90 16 27 C 0.10 1.16 6.60 -2.54 -0.02 1.15 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.30 8.00 -51.93 -0.42 -0.11 16 35 H 0.40 0.50 8.57 -40.82 -0.35 0.15 16 36 H 0.13 -0.09 8.09 -51.92 -0.42 -0.51 16 37 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.22 0.41 8.06 -52.49 -0.42 -0.02 16 39 H 0.22 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.22 8.04 -51.93 -0.42 0.81 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -43.01 372.46 -9.53 -52.54 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -5.34 Total: -3.86 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.59 Total: 2.31 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.15 Total: -50.29 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.18 Total: -18.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -43.01 -9.53 -52.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493383705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.797 kcal (2) G-P(sol) polarization free energy of solvation -43.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds