Wall clock time and date at job start Tue Mar 31 2020 22:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 120.00189 * 2 1 4 4 H 1.48501 * 109.46962 * 269.99315 * 3 2 1 5 5 H 1.48500 * 109.47244 * 29.99366 * 3 2 1 6 6 H 1.48504 * 109.47318 * 149.99270 * 3 2 1 7 7 C 1.38800 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99887 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99947 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47177 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99626 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00164 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.64720 * 359.97438 * 13 11 10 15 15 C 1.54322 * 107.27186 * 178.96001 * 14 13 11 16 16 C 1.55161 * 102.94310 * 337.81001 * 15 14 13 17 17 H 1.09001 * 110.99802 * 277.38630 * 16 15 14 18 18 N 1.46497 * 111.00422 * 153.57374 * 16 15 14 19 19 C 1.34777 * 119.99525 * 154.99667 * 18 16 15 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 16 22 22 N 1.46499 * 109.47257 * 180.27849 * 21 19 18 23 23 C 1.34436 * 126.82409 * 124.99671 * 22 21 19 24 24 N 1.30832 * 108.07378 * 179.97438 * 23 22 21 25 25 C 1.33237 * 109.83266 * 359.97438 * 24 23 22 26 26 N 1.30712 * 108.94749 * 359.75311 * 25 24 23 27 27 C 1.47426 * 125.65127 * 179.97438 * 13 11 10 28 28 H 0.97002 * 119.99937 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47361 * 59.99908 * 10 9 7 30 30 H 1.09001 * 109.46883 * 299.99581 * 10 9 7 31 31 H 1.09006 * 109.88340 * 59.54140 * 14 13 11 32 32 H 1.09001 * 109.88286 * 298.37781 * 14 13 11 33 33 H 1.09002 * 110.72278 * 219.44386 * 15 14 13 34 34 H 1.08998 * 110.87100 * 96.23964 * 15 14 13 35 35 H 0.97000 * 120.00580 * 335.00413 * 18 16 15 36 36 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 37 37 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 38 38 H 1.07994 * 125.96073 * 359.97438 * 23 22 21 39 39 H 1.08007 * 125.53130 * 180.02562 * 25 24 23 40 40 H 1.08998 * 110.36647 * 85.26923 * 27 13 11 41 41 H 1.08995 * 110.36399 * 322.94853 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4402 0.7002 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0021 13 7 2.8439 -6.3432 0.0008 14 6 4.3109 -6.2452 -0.0008 15 6 4.8663 -7.6847 0.0260 16 6 3.6849 -8.5022 0.6122 17 1 3.6718 -8.4440 1.7006 18 7 3.7373 -9.8959 0.1642 19 6 3.1592 -10.8635 0.9032 20 8 2.5953 -10.5802 1.9389 21 6 3.2077 -12.2964 0.4392 22 7 2.5080 -13.1466 1.4055 23 6 1.4949 -13.9924 1.1493 24 7 1.1490 -14.5640 2.2742 25 6 1.9153 -14.1111 3.2657 26 7 2.7667 -13.2451 2.7824 27 6 2.4654 -7.7680 0.0018 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7314 0.8904 30 1 3.1243 -3.7314 -0.8895 31 1 4.6471 -5.7016 0.8822 32 1 4.6474 -5.7348 -0.9033 33 1 5.7396 -7.7492 0.6752 34 1 5.1095 -8.0259 -0.9802 35 1 4.1881 -10.1225 -0.6643 36 1 2.7248 -12.3797 -0.5345 37 1 4.2463 -12.6172 0.3582 38 1 1.0451 -14.1691 0.1835 39 1 1.8472 -14.4141 4.3002 40 1 2.2854 -8.1134 -1.0162 41 1 1.5805 -7.9248 0.6185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493383705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:09 Heat of formation + Delta-G solvation = 5.439567 kcal Electronic energy + Delta-G solvation = -25602.663527 eV Core-core repulsion = 21645.202146 eV Total energy + Delta-G solvation = -3957.461381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.99433 -41.41107 -40.49220 -38.53072 -35.48571 -34.99736 -34.60283 -32.38452 -32.13990 -30.89452 -29.80514 -28.32013 -27.64055 -24.72819 -23.45350 -22.90084 -22.20227 -21.67331 -20.77569 -19.67022 -18.56222 -18.47877 -18.08467 -17.62573 -16.90144 -16.73134 -16.71429 -16.51257 -15.98038 -15.86697 -15.62579 -15.30688 -14.94256 -14.71627 -14.54086 -14.40841 -14.22466 -13.90248 -13.70176 -13.42407 -13.17912 -12.89816 -12.84646 -12.78450 -12.64708 -12.61879 -11.88072 -11.76085 -11.41940 -11.15544 -11.08704 -11.01447 -10.77536 -10.56190 -10.31133 -10.30556 -9.76240 -8.71037 -8.36097 -6.15589 0.67095 1.17967 1.31973 1.41748 1.42201 1.45724 1.49991 1.55020 1.86155 2.03738 2.23750 2.26114 2.98155 3.17945 3.36660 3.45164 3.54555 3.57682 3.73284 3.86628 3.95454 4.09866 4.16196 4.18115 4.20794 4.29066 4.41310 4.41651 4.57700 4.71891 4.76273 4.92558 5.06039 5.19679 5.25861 5.39790 5.40183 5.46346 5.88089 6.18193 6.29146 6.44036 7.03673 7.04887 7.11778 7.16521 8.73276 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028882 B = 0.001798 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.224936 B =15569.295216 C =16095.005246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.117 4.117 11 C 0.544 3.456 12 O -0.570 6.570 13 N -0.617 5.617 14 C 0.088 3.912 15 C -0.114 4.114 16 C 0.143 3.857 17 H 0.080 0.920 18 N -0.694 5.694 19 C 0.495 3.505 20 O -0.570 6.570 21 C 0.112 3.888 22 N -0.378 5.378 23 C 0.263 3.737 24 N -0.580 5.580 25 C 0.183 3.817 26 N -0.336 5.336 27 C 0.096 3.904 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.429 0.571 36 H 0.187 0.813 37 H 0.153 0.847 38 H 0.268 0.732 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.572 -28.700 -5.769 34.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.070 5.930 10 C -0.268 4.268 11 C 0.333 3.667 12 O -0.449 6.449 13 N -0.352 5.352 14 C -0.034 4.034 15 C -0.152 4.152 16 C 0.036 3.964 17 H 0.098 0.902 18 N -0.349 5.349 19 C 0.281 3.719 20 O -0.447 6.447 21 C -0.012 4.012 22 N -0.170 5.170 23 C -0.032 4.032 24 N -0.308 5.308 25 C -0.120 4.120 26 N -0.163 5.163 27 C -0.028 4.028 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.269 0.731 36 H 0.204 0.796 37 H 0.171 0.829 38 H 0.284 0.716 39 H 0.247 0.753 40 H 0.105 0.895 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 15.559 -28.472 -4.614 32.772 hybrid contribution 1.083 1.450 -0.085 1.812 sum 16.642 -27.022 -4.699 32.082 Atomic orbital electron populations 1.70194 1.08070 1.28651 1.47945 1.26176 0.95986 1.03448 0.93676 0.84917 0.78167 0.75776 0.78885 1.19093 1.20438 1.18064 1.23189 0.95380 0.91687 1.58980 0.89662 1.85670 1.10709 0.99510 1.97062 1.23286 1.03374 0.93508 1.06669 1.19883 0.85419 0.86170 0.75265 1.90698 1.17377 1.85802 1.50993 1.48306 1.08324 1.05151 1.73451 1.22435 0.77270 0.99716 1.03966 1.22931 0.96723 0.90752 1.04768 1.21799 0.94395 0.80940 0.99285 0.90202 1.45489 1.57404 1.04890 1.27125 1.21310 0.77912 0.88842 0.83883 1.90857 1.44117 1.83766 1.25936 1.22049 1.03026 0.84309 0.91857 1.50186 1.27926 1.32678 1.06180 1.27038 0.87366 0.87789 1.01054 1.70520 1.29855 1.31104 0.99313 1.26444 0.90946 0.93112 1.01499 1.78081 1.26046 1.22059 0.90116 1.22604 0.98447 0.80206 1.01551 0.91986 0.87536 0.86850 0.90445 0.88782 0.86745 0.86203 0.73136 0.79624 0.82930 0.71649 0.75266 0.89530 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.49 13.22 21.65 0.29 -56.20 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.54 -31.15 9.50 67.95 0.65 -30.51 16 8 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16 9 S -0.16 -8.87 20.57 -56.49 -1.16 -10.03 16 10 C -0.12 -4.75 5.35 71.24 0.38 -4.37 16 11 C 0.54 21.39 7.87 87.66 0.69 22.08 16 12 O -0.57 -28.39 16.12 -3.04 -0.05 -28.44 16 13 N -0.62 -16.62 3.33 -811.85 -2.70 -19.32 16 14 C 0.09 1.35 6.49 86.73 0.56 1.91 16 15 C -0.11 -0.78 6.60 31.78 0.21 -0.57 16 16 C 0.14 2.04 3.42 46.38 0.16 2.20 16 17 H 0.08 1.69 7.54 -2.39 -0.02 1.67 16 18 N -0.69 -4.95 5.20 -436.00 -2.27 -7.21 16 19 C 0.49 6.69 7.87 87.66 0.69 7.38 16 20 O -0.57 -15.95 15.40 -3.04 -0.05 -15.99 16 21 C 0.11 0.42 7.03 85.63 0.60 1.02 16 22 N -0.38 -5.29 3.40 -355.80 -1.21 -6.50 16 23 C 0.26 3.12 12.63 180.36 2.28 5.40 16 24 N -0.58 -11.28 11.19 -204.00 -2.28 -13.56 16 25 C 0.18 3.73 13.03 180.77 2.36 6.08 16 26 N -0.34 -7.55 11.84 -61.24 -0.72 -8.28 16 27 C 0.10 2.21 6.60 86.85 0.57 2.78 16 28 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 29 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 30 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 31 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.12 0.06 8.00 -2.39 -0.02 0.04 16 35 H 0.43 -1.21 8.57 -92.71 -0.79 -2.00 16 36 H 0.19 -1.33 8.09 -2.38 -0.02 -1.35 16 37 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.27 -0.06 8.06 -2.91 -0.02 -0.08 16 39 H 0.23 3.32 8.06 -2.91 -0.02 3.30 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.04 1.26 8.04 -2.39 -0.02 1.24 16 Total: -1.00 -104.47 372.46 1.76 -102.71 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 0.27 Total: 2.82 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 9.61 Total: 14.53 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -8.90 Total: -111.07 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -0.10 Total: -44.43 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -104.47 1.76 -102.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493383705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.152 kcal (2) G-P(sol) polarization free energy of solvation -104.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds