Wall clock time and date at job start Tue Mar 31 2020 22:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47231 * 240.00420 * 3 2 1 5 5 H 1.48505 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47260 * 119.99845 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.84993 * 336.19005 * 14 13 11 16 16 C 1.53781 * 113.61614 * 107.49783 * 14 13 11 17 17 C 1.53778 * 87.07849 * 89.11738 * 16 14 13 18 18 H 1.09010 * 113.61773 * 270.88132 * 17 16 14 19 19 N 1.46507 * 113.61619 * 139.98193 * 17 16 14 20 20 C 1.34774 * 119.99817 * 107.49792 * 19 17 16 21 21 O 1.21284 * 120.00509 * 0.02562 * 20 19 17 22 22 C 1.50707 * 119.99743 * 180.02562 * 20 19 17 23 23 N 1.46500 * 109.46989 * 179.97438 * 22 20 19 24 24 C 1.34439 * 126.81719 * 125.00111 * 23 22 20 25 25 N 1.30832 * 108.07439 * 179.97438 * 24 23 22 26 26 C 1.33238 * 109.82685 * 0.02562 * 25 24 23 27 27 N 1.30712 * 108.95494 * 359.75173 * 26 25 24 28 28 C 1.53777 * 87.08604 * 25.43188 * 17 16 14 29 29 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 31 31 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 32 32 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 33 33 H 1.09000 * 113.61467 * 203.66301 * 16 14 13 34 34 H 1.08991 * 113.61330 * 334.57193 * 16 14 13 35 35 H 0.96995 * 119.99432 * 287.50181 * 19 17 16 36 36 H 1.08990 * 109.47285 * 300.00546 * 22 20 19 37 37 H 1.09003 * 109.46770 * 60.00142 * 22 20 19 38 38 H 1.07995 * 125.96031 * 0.02562 * 24 23 22 39 39 H 1.08002 * 125.52279 * 179.97438 * 26 25 24 40 40 H 1.08998 * 113.61996 * 220.01715 * 28 17 16 41 41 H 1.08998 * 113.68961 * 89.12615 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0037 14 6 2.3304 -7.7150 -0.0051 15 1 1.3212 -7.7896 0.4001 16 6 2.5115 -8.4393 -1.3495 17 6 3.8840 -8.8971 -0.8284 18 1 4.6911 -8.1994 -1.0525 19 7 4.2130 -10.2811 -1.1787 20 6 5.1471 -10.5350 -2.1164 21 8 5.7157 -9.6179 -2.6701 22 6 5.4851 -11.9587 -2.4771 23 7 6.5207 -11.9672 -3.5133 24 6 7.7063 -12.5991 -3.4622 25 7 8.3412 -12.3617 -4.5812 26 6 7.5966 -11.5854 -5.3675 27 7 6.4702 -11.3211 -4.7593 28 6 3.3102 -8.7403 0.5897 29 1 -0.4850 0.8401 0.0004 30 1 3.1238 -3.7309 -0.8925 31 1 3.1252 -3.7317 0.8875 32 1 3.8009 -6.1834 -0.0040 33 1 1.8077 -9.2574 -1.5031 34 1 2.5716 -7.7653 -2.2039 35 1 3.7584 -11.0145 -0.7357 36 1 5.8509 -12.4805 -1.5929 37 1 4.5927 -12.4602 -2.8517 38 1 8.0705 -13.1986 -2.6412 39 1 7.8767 -11.2347 -6.3498 40 1 4.0150 -8.3093 1.3007 41 1 2.8247 -9.6400 0.9676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493975648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:26 Heat of formation + Delta-G solvation = 50.938109 kcal Electronic energy + Delta-G solvation = -25207.338491 eV Core-core repulsion = 21251.850075 eV Total energy + Delta-G solvation = -3955.488416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.45562 -40.75623 -39.51298 -38.00216 -34.52391 -34.40158 -32.57098 -32.42958 -31.56646 -29.29236 -28.55412 -26.10667 -25.52149 -24.64902 -22.65237 -22.37761 -21.24083 -20.82768 -19.81530 -18.00199 -17.90842 -17.79607 -16.90309 -16.33049 -16.12858 -16.00378 -15.50998 -15.24250 -14.95118 -14.80816 -14.59770 -14.40388 -14.14507 -13.83649 -13.47170 -13.21376 -12.96221 -12.83909 -12.73592 -12.33763 -12.24008 -11.94907 -11.17214 -11.05370 -11.03810 -10.89958 -10.78329 -10.73823 -10.40376 -10.15298 -9.95788 -9.83238 -9.54039 -9.47257 -9.07095 -8.96303 -8.25987 -6.51221 -6.22116 -3.93004 1.19924 1.70689 1.99928 2.57636 2.64764 2.95596 2.99895 3.23727 3.27050 3.30035 3.64181 3.82474 3.90938 3.99319 4.10750 4.19971 4.22428 4.32851 4.46885 4.60654 4.66229 4.82320 5.07727 5.13099 5.24117 5.25498 5.45387 5.51648 5.56790 5.76599 5.79033 5.84969 5.86976 6.00062 6.05441 6.12308 6.29096 6.58963 6.89733 7.58759 7.62059 7.62964 7.69662 8.34571 8.54056 9.23193 10.85226 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.001746 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.763170 B =16028.557705 C =17102.950432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.155 4.155 11 C 0.536 3.464 12 O -0.515 6.515 13 N -0.723 5.723 14 C 0.129 3.871 15 H 0.110 0.890 16 C -0.164 4.164 17 C 0.123 3.877 18 H 0.116 0.884 19 N -0.717 5.717 20 C 0.498 3.502 21 O -0.506 6.506 22 C 0.111 3.889 23 N -0.373 5.373 24 C 0.254 3.746 25 N -0.543 5.543 26 C 0.194 3.806 27 N -0.289 5.289 28 C -0.152 4.152 29 H 0.269 0.731 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.399 0.601 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.402 0.598 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.219 0.781 39 H 0.218 0.782 40 H 0.082 0.918 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.733 -30.506 -0.653 33.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.323 3.677 12 O -0.388 6.388 13 N -0.377 5.377 14 C 0.022 3.978 15 H 0.128 0.872 16 C -0.205 4.205 17 C 0.018 3.982 18 H 0.134 0.866 19 N -0.369 5.369 20 C 0.282 3.718 21 O -0.378 6.378 22 C -0.016 4.016 23 N -0.164 5.164 24 C -0.043 4.043 25 N -0.270 5.270 26 C -0.109 4.109 27 N -0.115 5.115 28 C -0.191 4.191 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.233 0.767 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.237 0.763 36 H 0.149 0.851 37 H 0.138 0.862 38 H 0.236 0.764 39 H 0.234 0.766 40 H 0.101 0.899 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.678 -29.708 -1.411 31.600 hybrid contribution 2.206 0.860 0.453 2.410 sum 12.884 -28.847 -0.958 31.608 Atomic orbital electron populations 1.70006 1.05947 1.27581 1.46752 1.24988 0.95036 0.99028 0.94496 0.86223 0.79240 0.81207 0.78823 1.19915 1.20797 1.19940 1.22828 0.94896 0.91642 1.59119 0.90948 1.85378 1.04809 0.96316 1.96737 1.23545 1.06698 0.95216 1.05059 1.20345 0.86501 0.86251 0.74643 1.90700 1.15344 1.85515 1.47268 1.45737 1.09871 1.04542 1.77543 1.21524 0.99141 0.81182 0.95982 0.87175 1.23961 0.96552 1.00751 0.99204 1.22712 0.97375 0.82792 0.95273 0.86645 1.45898 1.40960 1.09077 1.40967 1.20489 0.80257 0.90935 0.80155 1.90842 1.50756 1.45735 1.50512 1.21577 0.92690 0.96744 0.90544 1.49991 1.14943 1.37996 1.13510 1.26094 0.83336 0.96438 0.98425 1.70539 1.32441 1.20514 1.03524 1.26066 0.88398 0.95541 1.00869 1.78234 1.23186 1.17827 0.92227 1.23748 0.99115 1.00033 0.96191 0.92117 0.89104 0.89109 0.76665 0.88867 0.90233 0.76331 0.85090 0.86241 0.76434 0.76618 0.89914 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.54 9.71 7.85 -10.98 -0.09 9.62 16 12 O -0.51 -11.35 15.46 5.56 0.09 -11.26 16 13 N -0.72 -9.08 5.26 -53.02 -0.28 -9.36 16 14 C 0.13 1.30 4.32 -67.12 -0.29 1.01 16 15 H 0.11 1.30 7.46 -51.93 -0.39 0.91 16 16 C -0.16 -1.50 7.68 -25.92 -0.20 -1.70 16 17 C 0.12 0.90 4.11 -67.12 -0.28 0.62 16 18 H 0.12 1.10 7.47 -51.92 -0.39 0.71 16 19 N -0.72 -3.54 5.35 -53.01 -0.28 -3.83 16 20 C 0.50 3.73 7.87 -10.98 -0.09 3.64 16 21 O -0.51 -6.71 15.35 5.55 0.09 -6.63 16 22 C 0.11 0.40 7.03 -5.19 -0.04 0.36 16 23 N -0.37 -2.85 3.40 -63.81 -0.22 -3.07 16 24 C 0.25 1.63 12.63 -90.65 -1.14 0.49 16 25 N -0.54 -5.16 11.19 -15.83 -0.18 -5.33 16 26 C 0.19 1.89 13.03 -91.82 -1.20 0.69 16 27 N -0.29 -3.24 11.83 29.29 0.35 -2.89 16 28 C -0.15 -0.92 7.58 -25.92 -0.20 -1.12 16 29 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 32 H 0.40 4.01 8.70 -40.82 -0.36 3.66 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.40 0.48 8.73 -40.82 -0.36 0.13 16 36 H 0.13 -0.15 8.09 -51.93 -0.42 -0.57 16 37 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.22 0.25 8.06 -52.49 -0.42 -0.17 16 39 H 0.22 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.38 8.12 -51.93 -0.42 -0.05 16 LS Contribution 375.42 15.07 5.66 5.66 Total: -1.00 -42.40 375.42 -9.63 -52.03 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.25 Total: -0.28 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -3.09 Total: -2.25 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.12 Total: -49.93 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.17 Total: -17.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -42.40 -9.63 -52.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493975648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.965 kcal (2) G-P(sol) polarization free energy of solvation -42.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds