Wall clock time and date at job start Tue Mar 31 2020 22:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 N 1.46500 * 114.16958 * 139.67037 * 15 14 13 17 17 C 1.34775 * 120.00092 * 111.15664 * 16 15 14 18 18 O 1.21568 * 119.99826 * 0.02562 * 17 16 15 19 19 C 1.47695 * 120.00338 * 180.02562 * 17 16 15 20 20 C 1.39657 * 120.15064 * 359.72726 * 19 17 16 21 21 C 1.38076 * 119.84577 * 179.78888 * 20 19 17 22 22 F 1.35108 * 119.91146 * 180.22986 * 21 20 19 23 23 C 1.38648 * 120.16984 * 0.48893 * 21 20 19 24 24 C 1.38194 * 120.31339 * 359.73753 * 23 21 20 25 25 C 1.38307 * 120.14197 * 0.02815 * 24 23 21 26 26 F 1.35109 * 120.07959 * 179.97438 * 25 24 23 27 27 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 28 28 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 31 31 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 32 32 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 33 33 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 34 34 H 1.08997 * 114.34322 * 272.36212 * 15 14 13 35 35 H 0.97003 * 120.00179 * 291.16008 * 16 15 14 36 36 H 1.07997 * 120.07681 * 359.97438 * 20 19 17 37 37 H 1.08002 * 119.84576 * 179.72092 * 23 21 20 38 38 H 1.07997 * 119.92732 * 180.02562 * 24 23 21 39 39 H 1.08994 * 113.48196 * 253.46980 * 27 13 12 40 40 H 1.09003 * 113.47819 * 23.94188 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.4686 -6.4434 -1.3753 15 6 2.4122 -7.8815 -0.8411 16 7 1.7254 -8.8242 -1.7276 17 6 2.4246 -9.7899 -2.3561 18 8 3.6252 -9.8789 -2.1869 19 6 1.7324 -10.7399 -3.2503 20 6 0.3524 -10.6440 -3.4425 21 6 -0.2876 -11.5328 -4.2832 22 9 -1.6219 -11.4383 -4.4737 23 6 0.4345 -12.5252 -4.9283 24 6 1.7995 -12.6292 -4.7394 25 6 2.4545 -11.7428 -3.9038 26 9 3.7890 -11.8460 -3.7196 27 6 1.5115 -7.2624 0.2370 28 1 -0.4850 0.8401 -0.0004 29 1 0.3535 -2.3906 0.0002 30 1 0.6170 -4.9209 0.8886 31 1 0.6176 -4.9205 -0.8913 32 1 1.6687 -6.2094 -2.0777 33 1 3.4527 -6.1559 -1.7451 34 1 3.3632 -8.2589 -0.4654 35 1 0.7674 -8.7533 -1.8623 36 1 -0.2123 -9.8747 -2.9370 37 1 -0.0722 -13.2204 -5.5813 38 1 2.3559 -13.4043 -5.2452 39 1 1.6845 -7.6690 1.2333 40 1 0.4561 -7.2470 -0.0353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494398620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:02 Heat of formation + Delta-G solvation = -83.366177 kcal Electronic energy + Delta-G solvation = -27745.285608 eV Core-core repulsion = 23197.840184 eV Total energy + Delta-G solvation = -4547.445424 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.50231 -49.30450 -40.88859 -39.79065 -38.47279 -37.69227 -34.47799 -33.85827 -32.22900 -31.25016 -30.60412 -29.75175 -25.99130 -25.91317 -24.89426 -23.78559 -22.97971 -21.18668 -20.45506 -19.27522 -18.72483 -18.01421 -17.90872 -17.71078 -16.70672 -16.50920 -16.45787 -16.11805 -15.85279 -15.34337 -15.23446 -15.14670 -14.86456 -14.58208 -14.49804 -14.22014 -13.85120 -13.68285 -13.28659 -13.10410 -12.92282 -12.70458 -12.46588 -12.30199 -12.09482 -11.65060 -11.54792 -11.26983 -11.07552 -10.70505 -10.38904 -10.35673 -10.21028 -9.99889 -9.49798 -9.33985 -9.16927 -8.89511 -8.23528 -7.95880 -6.41472 -3.82114 -0.05667 0.31578 2.19882 2.60346 3.00209 3.18267 3.26812 3.33179 3.45736 3.52315 3.83694 3.89382 3.94667 4.05528 4.21132 4.31954 4.34906 4.42612 4.72409 4.85225 4.93409 5.10744 5.12521 5.23237 5.26382 5.27665 5.30183 5.37874 5.54106 5.61347 5.63642 5.78365 5.99776 6.04200 6.15895 6.25391 6.45822 7.02206 7.10799 7.55771 7.78765 8.06367 8.62359 9.18969 9.54568 10.07060 10.76427 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019803 B = 0.001931 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.589425 B =14495.940469 C =15204.311987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.446 3.554 11 O -0.573 6.573 12 C 0.011 3.989 13 N -0.433 5.433 14 C -0.008 4.008 15 C 0.118 3.882 16 N -0.711 5.711 17 C 0.559 3.441 18 O -0.512 6.512 19 C -0.143 4.143 20 C -0.094 4.094 21 C 0.083 3.917 22 F -0.130 7.130 23 C -0.099 4.099 24 C -0.134 4.134 25 C 0.152 3.848 26 F -0.108 7.108 27 C -0.013 4.013 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.133 0.867 35 H 0.399 0.601 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.095 0.905 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 -27.126 -9.158 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.231 3.769 11 O -0.456 6.456 12 C -0.121 4.121 13 N -0.155 5.155 14 C -0.139 4.139 15 C 0.013 3.987 16 N -0.363 5.363 17 C 0.345 3.655 18 O -0.388 6.388 19 C -0.148 4.148 20 C -0.113 4.113 21 C 0.064 3.936 22 F -0.109 7.109 23 C -0.118 4.118 24 C -0.153 4.153 25 C 0.132 3.868 26 F -0.085 7.085 27 C -0.143 4.143 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.151 0.849 35 H 0.235 0.765 36 H 0.167 0.833 37 H 0.170 0.830 38 H 0.173 0.827 39 H 0.113 0.887 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.849 -26.738 -8.556 28.336 hybrid contribution -1.689 0.865 -0.623 1.998 sum -5.538 -25.873 -9.178 28.006 Atomic orbital electron populations 1.69611 1.05919 1.28106 1.50895 1.25252 0.95650 0.99701 0.97418 0.85856 0.79267 0.80797 0.78376 1.20433 1.20936 1.19388 1.19700 0.93372 0.82201 1.47414 0.87935 1.41865 1.09105 1.04575 1.64893 1.19634 0.88405 0.84350 0.84560 1.90540 1.13619 1.86901 1.54521 1.22508 0.94532 0.92997 1.02094 1.68807 1.30328 0.99860 1.16526 1.24416 1.03873 0.93128 0.92440 1.22793 0.98074 0.87502 0.90299 1.45867 1.11576 1.31590 1.47252 1.17867 0.86926 0.80596 0.80087 1.90891 1.13554 1.72048 1.62271 1.19929 0.93541 0.98873 1.02411 1.21190 0.93105 0.99158 0.97853 1.17468 0.78217 0.98003 0.99916 1.91567 1.29705 1.95700 1.93901 1.21224 0.93694 0.97581 0.99252 1.21058 0.94422 1.00251 0.99554 1.17703 0.78460 0.94721 0.95965 1.91645 1.28801 1.94929 1.93171 1.24332 0.97278 0.92183 1.00551 0.91921 0.77580 0.89174 0.92213 0.91103 0.88622 0.84904 0.76488 0.83286 0.83038 0.82748 0.88652 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.57 -14.41 5.29 -10.96 -0.06 -14.46 16 10 C 0.45 10.62 7.85 -10.98 -0.09 10.53 16 11 O -0.57 -16.00 16.01 5.55 0.09 -15.91 16 12 C 0.01 0.19 5.30 -4.97 -0.03 0.16 16 13 N -0.43 -6.97 5.82 -246.09 -1.43 -8.41 16 14 C -0.01 -0.12 7.52 -7.54 -0.06 -0.18 16 15 C 0.12 1.37 4.60 -67.72 -0.31 1.06 16 16 N -0.71 -6.52 5.34 -54.53 -0.29 -6.81 16 17 C 0.56 6.30 7.77 -12.40 -0.10 6.20 16 18 O -0.51 -7.89 14.93 5.31 0.08 -7.81 16 19 C -0.14 -1.24 5.88 -104.92 -0.62 -1.86 16 20 C -0.09 -0.58 9.52 -39.11 -0.37 -0.95 16 21 C 0.08 0.50 7.29 -39.49 -0.29 0.21 16 22 F -0.13 -0.89 17.26 2.25 0.04 -0.85 16 23 C -0.10 -0.45 10.01 -39.45 -0.39 -0.85 16 24 C -0.13 -0.72 10.01 -39.57 -0.40 -1.12 16 25 C 0.15 1.32 7.28 -38.97 -0.28 1.04 16 26 F -0.11 -1.23 15.55 2.25 0.04 -1.19 16 27 C -0.01 -0.15 7.45 -7.54 -0.06 -0.21 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 30 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 31 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 32 H 0.07 0.90 7.42 -51.93 -0.39 0.52 16 33 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.13 1.77 7.45 -51.93 -0.39 1.38 16 35 H 0.40 2.41 6.79 -40.82 -0.28 2.13 16 36 H 0.15 0.58 6.40 -52.49 -0.34 0.25 16 37 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 38 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -35.50 356.87 -7.80 -43.30 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -4.12 Total: 8.43 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -3.23 Total: 6.02 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -1.06 Total: -53.54 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.17 Total: -23.73 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.07 Total: -2.05 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.50 -7.80 -43.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494398620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.062 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds