Wall clock time and date at job start Tue Mar 31 2020 22:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 N 1.46500 * 114.16958 * 139.67037 * 15 14 13 17 17 C 1.34775 * 120.00092 * 111.15664 * 16 15 14 18 18 O 1.21568 * 119.99826 * 0.02562 * 17 16 15 19 19 C 1.47695 * 120.00338 * 180.02562 * 17 16 15 20 20 C 1.39657 * 120.15064 * 359.72726 * 19 17 16 21 21 C 1.38076 * 119.84577 * 179.78888 * 20 19 17 22 22 F 1.35108 * 119.91146 * 180.22986 * 21 20 19 23 23 C 1.38648 * 120.16984 * 0.48893 * 21 20 19 24 24 C 1.38194 * 120.31339 * 359.73753 * 23 21 20 25 25 C 1.38307 * 120.14197 * 0.02815 * 24 23 21 26 26 F 1.35109 * 120.07959 * 179.97438 * 25 24 23 27 27 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 28 28 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 31 31 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 32 32 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 33 33 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 34 34 H 1.08997 * 114.34322 * 272.36212 * 15 14 13 35 35 H 0.97003 * 120.00179 * 291.16008 * 16 15 14 36 36 H 1.07997 * 120.07681 * 359.97438 * 20 19 17 37 37 H 1.08002 * 119.84576 * 179.72092 * 23 21 20 38 38 H 1.07997 * 119.92732 * 180.02562 * 24 23 21 39 39 H 1.08994 * 113.48196 * 253.46980 * 27 13 12 40 40 H 1.09003 * 113.47819 * 23.94188 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.4686 -6.4434 -1.3753 15 6 2.4122 -7.8815 -0.8411 16 7 1.7254 -8.8242 -1.7276 17 6 2.4246 -9.7899 -2.3561 18 8 3.6252 -9.8789 -2.1869 19 6 1.7324 -10.7399 -3.2503 20 6 0.3524 -10.6440 -3.4425 21 6 -0.2876 -11.5328 -4.2832 22 9 -1.6219 -11.4383 -4.4737 23 6 0.4345 -12.5252 -4.9283 24 6 1.7995 -12.6292 -4.7394 25 6 2.4545 -11.7428 -3.9038 26 9 3.7890 -11.8460 -3.7196 27 6 1.5115 -7.2624 0.2370 28 1 -0.4850 0.8401 -0.0004 29 1 0.3535 -2.3906 0.0002 30 1 0.6170 -4.9209 0.8886 31 1 0.6176 -4.9205 -0.8913 32 1 1.6687 -6.2094 -2.0777 33 1 3.4527 -6.1559 -1.7451 34 1 3.3632 -8.2589 -0.4654 35 1 0.7674 -8.7533 -1.8623 36 1 -0.2123 -9.8747 -2.9370 37 1 -0.0722 -13.2204 -5.5813 38 1 2.3559 -13.4043 -5.2452 39 1 1.6845 -7.6690 1.2333 40 1 0.4561 -7.2470 -0.0353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494398620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:02 Heat of formation + Delta-G solvation = -111.651410 kcal Electronic energy + Delta-G solvation = -27746.512148 eV Core-core repulsion = 23197.840184 eV Total energy + Delta-G solvation = -4548.671964 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.01396 -49.98113 -41.87065 -40.72488 -39.64664 -39.03477 -35.98190 -35.35572 -33.31537 -32.82082 -31.14394 -30.96592 -27.45902 -26.99084 -25.98587 -24.82583 -23.70359 -22.01798 -21.43092 -21.02453 -19.91780 -19.39981 -18.60008 -18.36593 -17.85136 -17.42535 -17.36330 -17.10550 -16.57874 -16.55160 -16.43652 -16.21616 -15.91913 -15.67694 -15.59530 -15.40646 -14.99122 -14.82410 -14.30971 -14.19360 -13.80792 -13.71742 -13.65068 -13.51654 -13.06442 -12.99007 -12.77761 -12.58805 -12.44968 -12.36671 -12.13328 -11.87802 -11.50872 -11.25951 -10.51612 -10.40859 -10.20239 -10.01437 -9.80210 -9.72218 -8.47541 -5.95921 -0.60167 -0.15871 1.36805 1.40554 1.52692 1.53158 1.79153 2.05734 2.28606 2.37513 2.82747 2.96780 3.01355 3.18471 3.27219 3.37485 3.49317 3.52618 3.72673 3.84065 3.98209 4.06935 4.25615 4.26154 4.36313 4.39377 4.52707 4.64068 4.69408 4.77510 4.80106 4.83903 4.88437 4.94061 5.26555 5.31123 5.40396 5.58192 5.85528 6.05776 6.31909 6.60780 7.00041 7.13097 7.56477 8.13839 8.69808 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019803 B = 0.001931 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.589425 B =14495.940469 C =15204.311987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.276 1.276 7 C -0.333 4.333 8 H 0.075 0.925 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.622 6.622 12 C 0.025 3.975 13 N -0.474 5.474 14 C -0.012 4.012 15 C 0.131 3.869 16 N -0.693 5.693 17 C 0.557 3.443 18 O -0.565 6.565 19 C -0.160 4.160 20 C -0.085 4.085 21 C 0.079 3.921 22 F -0.133 7.133 23 C -0.082 4.082 24 C -0.124 4.124 25 C 0.124 3.876 26 F -0.132 7.132 27 C 0.004 3.996 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.418 0.582 36 H 0.172 0.828 37 H 0.184 0.816 38 H 0.180 0.820 39 H 0.105 0.895 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 -28.372 -9.952 31.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.201 1.201 7 C -0.463 4.463 8 H 0.093 0.907 9 N -0.213 5.213 10 C 0.226 3.774 11 O -0.508 6.508 12 C -0.106 4.106 13 N -0.197 5.197 14 C -0.143 4.143 15 C 0.025 3.975 16 N -0.345 5.345 17 C 0.345 3.655 18 O -0.444 6.444 19 C -0.164 4.164 20 C -0.104 4.104 21 C 0.060 3.940 22 F -0.111 7.111 23 C -0.100 4.100 24 C -0.142 4.142 25 C 0.104 3.896 26 F -0.111 7.111 27 C -0.125 4.125 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.134 0.866 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.258 0.742 36 H 0.190 0.810 37 H 0.201 0.799 38 H 0.197 0.803 39 H 0.124 0.876 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.899 -27.997 -9.354 30.314 hybrid contribution -0.806 1.175 -0.425 1.487 sum -7.706 -26.822 -9.778 29.570 Atomic orbital electron populations 1.69659 1.06660 1.29269 1.50403 1.25996 0.96588 1.02256 0.96352 0.84961 0.77868 0.77057 0.78654 1.19627 1.19325 1.20061 1.19619 0.92574 0.84174 1.49948 0.90745 1.41927 1.09301 1.04608 1.65433 1.20892 0.88271 0.86115 0.82105 1.90507 1.16198 1.87970 1.56149 1.22393 0.94066 0.89460 1.04702 1.68723 1.31841 1.01544 1.17624 1.24455 1.02665 0.94788 0.92345 1.22375 0.97938 0.86535 0.90659 1.45633 1.12319 1.30384 1.46201 1.18317 0.86450 0.80868 0.79894 1.90866 1.15894 1.73503 1.64134 1.19732 0.94495 0.99019 1.03150 1.21320 0.91918 0.99569 0.97573 1.17597 0.78143 0.98294 1.00000 1.91570 1.29899 1.95739 1.93910 1.21589 0.93126 0.97052 0.98258 1.21308 0.94822 0.99737 0.98363 1.18183 0.77724 0.96149 0.97577 1.91580 1.30700 1.95206 1.93585 1.24354 0.98710 0.88644 1.00775 0.91271 0.76861 0.86570 0.89172 0.89110 0.92269 0.87252 0.74227 0.81048 0.79851 0.80287 0.87628 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 2 C -0.01 -0.65 5.50 84.92 0.47 -0.19 16 3 Si 0.99 43.41 29.55 68.60 2.03 45.43 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 8 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 9 N -0.57 -29.57 5.29 -306.98 -1.62 -31.19 16 10 C 0.44 21.17 7.85 87.66 0.69 21.86 16 11 O -0.62 -36.13 16.01 -3.07 -0.05 -36.18 16 12 C 0.03 0.83 5.30 85.56 0.45 1.28 16 13 N -0.47 -14.86 5.82 -932.48 -5.43 -20.29 16 14 C -0.01 -0.35 7.52 83.58 0.63 0.28 16 15 C 0.13 2.97 4.60 45.45 0.21 3.18 16 16 N -0.69 -11.77 5.34 -444.71 -2.37 -14.14 16 17 C 0.56 12.61 7.77 86.74 0.67 13.28 16 18 O -0.56 -18.45 14.93 -3.93 -0.06 -18.51 16 19 C -0.16 -2.64 5.88 -20.06 -0.12 -2.76 16 20 C -0.08 -0.84 9.52 22.57 0.21 -0.62 16 21 C 0.08 0.70 7.29 22.33 0.16 0.87 16 22 F -0.13 -1.38 17.26 44.97 0.78 -0.60 16 23 C -0.08 -0.47 10.01 22.36 0.22 -0.25 16 24 C -0.12 -1.06 10.01 22.28 0.22 -0.84 16 25 C 0.12 2.11 7.28 22.66 0.17 2.28 16 26 F -0.13 -3.19 15.55 44.97 0.70 -2.49 16 27 C 0.00 0.08 7.45 83.58 0.62 0.70 16 28 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 30 H 0.12 3.18 8.08 -2.39 -0.02 3.16 16 31 H 0.09 2.39 7.30 -2.39 -0.02 2.37 16 32 H 0.09 2.16 7.42 -2.39 -0.02 2.14 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.11 3.06 7.45 -2.39 -0.02 3.04 16 35 H 0.42 3.76 6.79 -92.71 -0.63 3.13 16 36 H 0.17 0.75 6.40 -2.91 -0.02 0.73 16 37 H 0.18 -0.10 8.06 -2.91 -0.02 -0.13 16 38 H 0.18 0.58 8.06 -2.91 -0.02 0.55 16 39 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.11 1.34 7.90 -2.39 -0.02 1.32 16 Total: -1.00 -82.18 356.87 -0.55 -82.72 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.23 Total: 23.65 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 5.43 Total: 20.67 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -9.14 Total: -114.69 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -0.11 Total: -54.69 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 1.48 Total: -3.09 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -82.18 -0.55 -82.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494398620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.928 kcal (2) G-P(sol) polarization free energy of solvation -82.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds