Wall clock time and date at job start Tue Mar 31 2020 22:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31234 * 124.05554 * 2 1 4 4 N 1.27344 * 120.03768 * 179.97438 * 3 2 1 5 5 S 1.56637 * 109.73894 * 359.97438 * 4 3 2 6 6 C 1.38246 * 124.05260 * 179.97438 * 2 1 3 7 7 C 1.47168 * 128.48123 * 0.03721 * 6 2 1 8 8 O 1.21628 * 119.99507 * 359.97418 * 7 6 2 9 9 N 1.34769 * 120.00322 * 179.97438 * 7 6 2 10 10 C 1.46505 * 120.00306 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47445 * 179.97438 * 10 9 7 12 12 C 1.53935 * 113.73299 * 271.72569 * 11 10 9 13 13 N 1.47954 * 86.18137 * 221.92267 * 12 11 10 14 14 C 1.46899 * 111.00124 * 137.58267 * 13 12 11 15 15 C 1.50693 * 109.47119 * 70.64147 * 14 13 12 16 16 O 1.21296 * 120.00042 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00143 * 180.02562 * 15 14 13 18 18 C 1.37093 * 119.99986 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00506 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99900 * 179.97438 * 18 17 15 21 21 N 1.31406 * 120.00038 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47239 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47151 * 120.00143 * 22 20 18 25 25 H 1.48497 * 109.47094 * 240.00024 * 22 20 18 26 26 C 1.47964 * 90.76417 * 24.68674 * 13 12 11 27 27 H 1.08994 * 109.47128 * 270.04273 * 1 2 3 28 28 H 1.08997 * 109.46991 * 30.04797 * 1 2 3 29 29 H 1.09001 * 109.46861 * 150.04584 * 1 2 3 30 30 H 0.96998 * 119.99999 * 359.97438 * 9 7 6 31 31 H 1.08997 * 109.46770 * 299.99869 * 10 9 7 32 32 H 1.09002 * 109.47034 * 59.99106 * 10 9 7 33 33 H 1.08996 * 112.93593 * 43.43164 * 11 10 9 34 34 H 1.09005 * 113.75722 * 336.24206 * 12 11 10 35 35 H 1.09003 * 113.76047 * 107.59741 * 12 11 10 36 36 H 1.09003 * 109.46997 * 190.63747 * 14 13 12 37 37 H 1.08997 * 109.47076 * 310.64084 * 14 13 12 38 38 H 0.97000 * 119.99874 * 359.97438 * 17 15 14 39 39 H 0.97001 * 120.00225 * 180.02562 * 21 20 18 40 40 H 1.08997 * 113.76235 * 220.98962 * 26 13 12 41 41 H 1.09000 * 113.75469 * 89.62679 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9367 -0.5097 0.0017 6 6 2.2812 -1.1454 0.0005 7 6 1.8394 -2.5492 0.0004 8 8 0.6521 -2.8131 0.0002 9 7 2.7505 -3.5424 0.0004 10 6 2.3107 -4.9399 -0.0002 11 6 3.5336 -5.8594 -0.0007 12 6 4.0543 -6.1971 -1.4094 13 7 4.2241 -7.5786 -0.9077 14 6 3.7744 -8.5596 -1.9043 15 6 4.7420 -8.5820 -3.0593 16 8 5.7108 -7.8522 -3.0531 17 7 4.5305 -9.4123 -4.0997 18 6 5.4105 -9.4323 -5.1507 19 1 6.2736 -8.7831 -5.1449 20 6 5.1927 -10.2887 -6.2230 21 7 4.1434 -11.0797 -6.2295 22 14 6.3922 -10.3164 -7.6548 23 1 7.4829 -9.3399 -7.4058 24 1 6.9691 -11.6780 -7.7909 25 1 5.6785 -9.9539 -8.9056 26 6 3.1851 -7.3537 0.1215 27 1 -0.3633 0.0008 1.0276 28 1 -0.3633 0.8895 -0.5146 29 1 -0.3633 -0.8904 -0.5131 30 1 3.6973 -3.3319 0.0002 31 1 1.7112 -5.1325 0.8894 32 1 1.7118 -5.1319 -0.8905 33 1 4.3112 -5.5324 0.6896 34 1 3.2999 -6.1032 -2.1906 35 1 4.9926 -5.7027 -1.6610 36 1 3.7313 -9.5483 -1.4472 37 1 2.7839 -8.2828 -2.2654 38 1 3.7555 -9.9957 -4.1048 39 1 3.9916 -11.6779 -6.9779 40 1 3.4289 -7.7836 1.0930 41 1 2.1766 -7.5981 -0.2120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494524616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:25 Heat of formation + Delta-G solvation = 38.703235 kcal Electronic energy + Delta-G solvation = -25713.015473 eV Core-core repulsion = 21756.996513 eV Total energy + Delta-G solvation = -3956.018960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.40145 -40.41810 -39.56001 -37.77177 -35.23080 -33.93910 -33.70764 -31.49121 -31.03152 -29.17253 -27.45421 -27.09585 -26.06466 -24.95670 -23.24440 -22.23594 -20.97616 -19.69689 -19.25138 -18.93360 -18.03236 -17.74637 -16.58881 -16.49197 -16.24323 -15.61311 -15.44177 -15.22542 -14.71570 -14.62309 -14.43161 -14.18815 -13.69827 -13.53309 -13.44214 -13.36820 -13.02568 -12.84018 -12.58365 -12.20477 -11.97768 -11.78261 -11.54049 -11.43502 -11.12365 -10.83546 -10.74216 -10.69468 -10.41723 -10.36958 -10.29818 -10.25272 -10.16123 -9.55585 -9.52759 -8.72618 -8.28256 -8.00238 -6.45317 -3.86230 -0.71734 0.36282 1.02261 1.50132 2.50338 2.54576 3.13521 3.24418 3.31296 3.44482 3.83596 3.91394 4.10398 4.14175 4.21870 4.33866 4.51327 4.85555 4.87400 4.98854 5.18494 5.19005 5.24943 5.30370 5.31724 5.42419 5.50066 5.64258 5.67521 5.71952 5.77142 5.86452 5.98893 6.20561 6.21648 6.55204 6.87648 7.12989 7.21463 7.51850 7.58895 8.02020 8.57243 9.14296 9.50209 10.01492 10.72455 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.002006 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.889190 B =13952.254270 C =14616.698429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.104 3.896 3 N -0.251 5.251 4 N -0.251 5.251 5 S 0.422 5.578 6 C -0.297 4.297 7 C 0.603 3.397 8 O -0.514 6.514 9 N -0.716 5.716 10 C 0.129 3.871 11 C -0.137 4.137 12 C 0.025 3.975 13 N -0.453 5.453 14 C 0.010 3.990 15 C 0.443 3.557 16 O -0.580 6.580 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.010 3.990 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.402 0.598 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.092 0.908 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.062 16.452 15.530 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 N -0.117 5.117 4 N -0.231 5.231 5 S 0.559 5.441 6 C -0.438 4.438 7 C 0.386 3.614 8 O -0.390 6.390 9 N -0.368 5.368 10 C 0.006 3.994 11 C -0.156 4.156 12 C -0.104 4.104 13 N -0.175 5.175 14 C -0.122 4.122 15 C 0.228 3.772 16 O -0.464 6.464 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.120 4.120 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.237 0.763 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.029 17.457 15.550 23.913 hybrid contribution -1.490 -0.847 -1.161 2.070 sum -6.519 16.610 14.389 22.922 Atomic orbital electron populations 1.20555 0.83663 1.05175 1.04431 1.22992 1.00295 0.84993 0.96040 1.70643 0.96891 1.27957 1.16243 1.78897 1.09463 1.15661 1.19104 1.82638 1.09498 1.01541 1.50454 1.27747 0.98303 0.99960 1.17800 1.16405 0.85939 0.81947 0.77069 1.90830 1.15730 1.83064 1.49416 1.45877 1.09498 1.06545 1.74888 1.21578 0.96717 0.78032 1.03106 1.23381 0.97335 0.94959 0.99912 1.23897 1.01669 0.90889 0.93947 1.68405 1.37668 1.03092 1.08351 1.22466 0.97055 0.98544 0.94152 1.19679 0.88329 0.84859 0.84312 1.90516 1.31510 1.44186 1.80211 1.41885 1.25218 1.35790 1.17194 1.19738 1.05859 1.21255 0.95964 0.87884 1.25270 0.97467 0.96011 0.99233 1.69615 1.27576 1.24361 1.32705 0.85805 0.80025 0.78179 0.80369 1.19219 1.20710 1.20744 1.23964 0.95677 0.93501 0.98857 0.89226 0.89752 0.87955 0.76339 0.90453 0.90556 0.87512 0.91354 0.88680 0.89081 0.92752 0.77491 0.91889 0.88977 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 9.90 36.01 0.36 -0.22 16 2 C 0.10 0.98 7.00 -82.84 -0.58 0.40 16 3 N -0.25 -2.70 11.54 33.42 0.39 -2.31 16 4 N -0.25 -2.56 12.51 60.35 0.75 -1.80 16 5 S 0.42 3.05 23.05 -107.50 -2.48 0.58 16 6 C -0.30 -2.63 6.81 -35.95 -0.24 -2.88 16 7 C 0.60 5.85 7.80 -12.64 -0.10 5.75 16 8 O -0.51 -6.30 14.89 5.25 0.08 -6.22 16 9 N -0.72 -5.68 5.55 -61.46 -0.34 -6.02 16 10 C 0.13 1.08 5.53 -4.04 -0.02 1.06 16 11 C -0.14 -1.25 3.94 -89.69 -0.35 -1.60 16 12 C 0.02 0.33 6.31 -2.77 -0.02 0.32 16 13 N -0.45 -6.85 5.95 -239.75 -1.43 -8.28 16 14 C 0.01 0.17 5.31 -4.98 -0.03 0.14 16 15 C 0.44 10.20 7.59 -10.99 -0.08 10.12 16 16 O -0.58 -15.30 15.13 5.54 0.08 -15.21 16 17 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 18 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 22 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.01 0.10 7.54 -2.77 -0.02 0.08 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.10 0.84 6.47 -51.93 -0.34 0.51 16 30 H 0.40 2.41 7.90 -40.82 -0.32 2.08 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 33 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.95 7.53 -51.93 -0.39 0.56 16 35 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 36 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.05 0.82 7.69 -51.93 -0.40 0.42 16 38 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -33.80 366.20 -8.16 -41.96 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.05 Total: 8.41 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.33 Total: 5.27 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.04 Total: -56.12 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.16 Total: -21.43 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.48 Total: 0.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.80 -8.16 -41.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494524616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.660 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds