Wall clock time and date at job start Tue Mar 31 2020 22:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 120.00098 * 2 1 4 4 H 1.48498 * 109.47041 * 269.99880 * 3 2 1 5 5 H 1.48504 * 109.46707 * 29.99699 * 3 2 1 6 6 H 1.48497 * 109.47397 * 149.99746 * 3 2 1 7 7 C 1.38798 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00050 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00138 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47201 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99777 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99783 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99777 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47358 * 179.97438 * 14 13 11 16 16 C 1.53505 * 114.17046 * 185.00155 * 15 14 13 17 17 N 1.47484 * 87.93218 * 220.13399 * 16 15 14 18 18 C 1.46897 * 111.00236 * 138.70108 * 17 16 15 19 19 C 1.50694 * 109.47164 * 170.00313 * 18 17 16 20 20 C 1.38238 * 120.40442 * 270.02113 * 19 18 17 21 21 N 1.31850 * 120.82052 * 179.97438 * 20 19 18 22 22 C 1.31869 * 121.74835 * 359.74683 * 21 20 19 23 23 C 1.38426 * 120.72758 * 0.54407 * 22 21 20 24 24 F 1.35104 * 120.44260 * 179.71963 * 23 22 21 25 25 C 1.38590 * 120.40644 * 90.00186 * 19 18 17 26 26 C 1.47481 * 87.83163 * 27.01101 * 17 16 15 27 27 H 0.97002 * 120.00000 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47108 * 60.00382 * 10 9 7 29 29 H 1.08995 * 109.47295 * 300.00582 * 10 9 7 30 30 H 0.96997 * 120.00459 * 359.97438 * 13 11 10 31 31 H 1.08998 * 109.47783 * 59.99600 * 14 13 11 32 32 H 1.09008 * 109.47099 * 299.99524 * 14 13 11 33 33 H 1.09004 * 113.25166 * 317.94818 * 15 14 13 34 34 H 1.09006 * 113.48185 * 105.37152 * 16 15 14 35 35 H 1.08995 * 113.47910 * 334.89799 * 16 15 14 36 36 H 1.09001 * 109.46951 * 50.00208 * 18 17 16 37 37 H 1.09003 * 109.47145 * 290.00402 * 18 17 16 38 38 H 1.08003 * 119.59037 * 359.97438 * 20 19 18 39 39 H 1.08006 * 119.63635 * 180.26425 * 22 21 20 40 40 H 1.07997 * 120.79933 * 359.97438 * 25 19 18 41 41 H 1.08998 * 113.47884 * 87.76070 * 26 17 16 42 42 H 1.09005 * 113.47194 * 218.22709 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0036 12 8 0.7912 -5.5022 0.0038 13 7 2.8442 -6.3430 0.0049 14 6 2.3305 -7.7150 0.0061 15 6 3.5026 -8.6985 0.0068 16 6 3.0872 -10.1714 -0.1140 17 7 4.1314 -10.4917 0.8771 18 6 3.6521 -11.4891 1.8432 19 6 4.8074 -11.9719 2.6817 20 6 5.5554 -13.0629 2.2803 21 7 6.5682 -13.4920 3.0073 22 6 6.9116 -12.9019 4.1355 23 6 6.2058 -11.8074 4.6046 24 9 6.5592 -11.2107 5.7641 25 6 5.1333 -11.3272 3.8645 26 6 3.9706 -9.1242 1.4055 27 1 -0.4850 0.8401 0.0004 28 1 3.1245 -3.7306 0.8928 29 1 3.1245 -3.7321 -0.8871 30 1 3.8010 -6.1834 0.0051 31 1 1.7222 -7.8761 -0.8839 32 1 1.7216 -7.8742 0.8961 33 1 4.3102 -8.4060 -0.6643 34 1 3.2784 -10.5971 -1.0991 35 1 2.0759 -10.3680 0.2419 36 1 3.2142 -12.3319 1.3083 37 1 2.8987 -11.0372 2.4884 38 1 5.3071 -13.5702 1.3597 39 1 7.7501 -13.2795 4.7020 40 1 4.5670 -10.4720 4.2023 41 1 3.1950 -9.0413 2.1669 42 1 4.9104 -8.6623 1.7081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494526640.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:57 Heat of formation + Delta-G solvation = -9.509619 kcal Electronic energy + Delta-G solvation = -24924.286326 eV Core-core repulsion = 20946.256739 eV Total energy + Delta-G solvation = -3978.029588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.44085 -41.15364 -40.23820 -38.98631 -35.02243 -33.82727 -32.44573 -31.96994 -30.63107 -29.09210 -26.76537 -26.42886 -25.48428 -24.29498 -23.79643 -21.95225 -20.71368 -19.90093 -17.99713 -17.81831 -17.77074 -17.32187 -16.59053 -16.53383 -16.27916 -16.06138 -15.47578 -15.09977 -14.96724 -14.81771 -14.45263 -14.20725 -13.91851 -13.78605 -13.62714 -13.29665 -13.16760 -13.08194 -12.89679 -12.59460 -11.98264 -11.87884 -11.78770 -11.43316 -11.07840 -11.04152 -10.92126 -10.77489 -10.33613 -10.14950 -9.83700 -9.57245 -9.40675 -9.35863 -9.08839 -8.93413 -8.25996 -6.52168 -6.23424 -3.94170 0.37135 0.53732 2.97361 3.02873 3.05752 3.21170 3.26424 3.30216 3.42854 3.58557 3.62488 3.85336 3.98769 4.11441 4.15336 4.18813 4.29127 4.34939 4.42477 4.75893 4.78996 4.85425 4.88312 5.02027 5.11834 5.15769 5.18689 5.21795 5.27574 5.30049 5.37677 5.46728 5.56695 5.67980 5.75324 5.85949 5.88522 6.07576 6.11633 6.42973 6.56329 7.28584 7.57903 7.65694 8.33508 8.56811 9.21999 10.83983 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.001683 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.729806 B =16628.266649 C =17661.586543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.132 3.868 15 C -0.126 4.126 16 C 0.008 3.992 17 N -0.467 5.467 18 C 0.057 3.943 19 C -0.092 4.092 20 C 0.106 3.894 21 N -0.457 5.457 22 C 0.071 3.929 23 C 0.050 3.950 24 F -0.129 7.129 25 C -0.102 4.102 26 C -0.001 4.001 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.164 0.836 39 H 0.167 0.833 40 H 0.145 0.855 41 H 0.076 0.924 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.016 -27.599 4.834 30.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.008 3.992 15 C -0.145 4.145 16 C -0.121 4.121 17 N -0.189 5.189 18 C -0.071 4.071 19 C -0.095 4.095 20 C -0.052 4.052 21 N -0.164 5.164 22 C -0.088 4.088 23 C 0.028 3.972 24 F -0.108 7.108 25 C -0.130 4.130 26 C -0.129 4.129 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.181 0.819 39 H 0.184 0.816 40 H 0.163 0.837 41 H 0.094 0.906 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.978 -28.827 4.406 31.160 hybrid contribution 1.266 2.429 0.934 2.894 sum 12.243 -26.398 5.339 29.585 Atomic orbital electron populations 1.70016 1.05951 1.27467 1.46842 1.24994 0.95033 0.99040 0.94521 0.86167 0.79412 0.81552 0.78363 1.20258 1.20744 1.19694 1.22867 0.94913 0.91637 1.58982 0.90913 1.85391 1.04949 0.96365 1.96725 1.23531 1.06580 0.95378 1.04948 1.20319 0.86506 0.86324 0.75083 1.90702 1.15403 1.85635 1.47528 1.45982 1.09990 1.05325 1.77995 1.21225 0.94919 0.80592 1.02511 1.22977 0.98949 0.94475 0.98083 1.23833 0.95155 0.94484 0.98591 1.68977 1.37723 1.02836 1.09329 1.21627 0.93135 0.97888 0.94475 1.20598 0.98426 0.96100 0.94373 1.22766 0.90262 0.93601 0.98526 1.67776 1.14853 1.29002 1.04801 1.22940 0.99616 0.92262 0.93938 1.18806 0.97672 0.95835 0.84854 1.91548 1.91203 1.82611 1.45440 1.21598 0.96337 1.00395 0.94628 1.24114 1.01974 0.90189 0.96652 0.92174 0.89225 0.89192 0.76722 0.91084 0.91580 0.87120 0.88876 0.90499 0.88899 0.91832 0.81921 0.81590 0.83724 0.90617 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 11 C 0.53 9.51 7.85 -10.99 -0.09 9.42 16 12 O -0.52 -11.44 15.86 5.56 0.09 -11.35 16 13 N -0.74 -8.96 5.56 -60.29 -0.33 -9.29 16 14 C 0.13 1.31 5.59 -4.04 -0.02 1.28 16 15 C -0.13 -0.84 4.08 -90.09 -0.37 -1.21 16 16 C 0.01 0.05 7.26 -7.55 -0.05 -0.01 16 17 N -0.47 -2.96 6.32 -246.11 -1.55 -4.51 16 18 C 0.06 0.30 4.97 -4.98 -0.02 0.27 16 19 C -0.09 -0.60 5.48 -104.49 -0.57 -1.17 16 20 C 0.11 0.74 10.86 -17.54 -0.19 0.55 16 21 N -0.46 -3.84 10.36 -13.19 -0.14 -3.97 16 22 C 0.07 0.53 11.17 -17.47 -0.20 0.33 16 23 C 0.05 0.39 7.35 -39.28 -0.29 0.10 16 24 F -0.13 -1.11 17.28 2.25 0.04 -1.07 16 25 C -0.10 -0.71 9.85 -39.21 -0.39 -1.10 16 26 C 0.00 0.00 7.29 -7.55 -0.06 -0.06 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 30 H 0.40 3.72 8.47 -40.82 -0.35 3.38 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.70 7.82 -51.92 -0.41 0.30 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.38 7.87 -51.93 -0.41 -0.03 16 36 H 0.09 0.36 8.03 -51.93 -0.42 -0.06 16 37 H 0.06 0.30 7.25 -51.93 -0.38 -0.08 16 38 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.17 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.08 0.48 7.16 -51.93 -0.37 0.11 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -35.22 378.69 -10.19 -45.42 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.68 Total: -0.80 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.82 Total: -7.25 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -1.29 Total: -43.05 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.22 -10.19 -45.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494526640.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.906 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds