Wall clock time and date at job start Tue Mar 31 2020 22:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 120.00098 * 2 1 4 4 H 1.48498 * 109.47041 * 269.99880 * 3 2 1 5 5 H 1.48504 * 109.46707 * 29.99699 * 3 2 1 6 6 H 1.48497 * 109.47397 * 149.99746 * 3 2 1 7 7 C 1.38798 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00050 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00138 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47201 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99777 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99783 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99777 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47358 * 179.97438 * 14 13 11 16 16 C 1.53505 * 114.17046 * 185.00155 * 15 14 13 17 17 N 1.47484 * 87.93218 * 220.13399 * 16 15 14 18 18 C 1.46897 * 111.00236 * 138.70108 * 17 16 15 19 19 C 1.50694 * 109.47164 * 170.00313 * 18 17 16 20 20 C 1.38238 * 120.40442 * 270.02113 * 19 18 17 21 21 N 1.31850 * 120.82052 * 179.97438 * 20 19 18 22 22 C 1.31869 * 121.74835 * 359.74683 * 21 20 19 23 23 C 1.38426 * 120.72758 * 0.54407 * 22 21 20 24 24 F 1.35104 * 120.44260 * 179.71963 * 23 22 21 25 25 C 1.38590 * 120.40644 * 90.00186 * 19 18 17 26 26 C 1.47481 * 87.83163 * 27.01101 * 17 16 15 27 27 H 0.97002 * 120.00000 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47108 * 60.00382 * 10 9 7 29 29 H 1.08995 * 109.47295 * 300.00582 * 10 9 7 30 30 H 0.96997 * 120.00459 * 359.97438 * 13 11 10 31 31 H 1.08998 * 109.47783 * 59.99600 * 14 13 11 32 32 H 1.09008 * 109.47099 * 299.99524 * 14 13 11 33 33 H 1.09004 * 113.25166 * 317.94818 * 15 14 13 34 34 H 1.09006 * 113.48185 * 105.37152 * 16 15 14 35 35 H 1.08995 * 113.47910 * 334.89799 * 16 15 14 36 36 H 1.09001 * 109.46951 * 50.00208 * 18 17 16 37 37 H 1.09003 * 109.47145 * 290.00402 * 18 17 16 38 38 H 1.08003 * 119.59037 * 359.97438 * 20 19 18 39 39 H 1.08006 * 119.63635 * 180.26425 * 22 21 20 40 40 H 1.07997 * 120.79933 * 359.97438 * 25 19 18 41 41 H 1.08998 * 113.47884 * 87.76070 * 26 17 16 42 42 H 1.09005 * 113.47194 * 218.22709 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0036 12 8 0.7912 -5.5022 0.0038 13 7 2.8442 -6.3430 0.0049 14 6 2.3305 -7.7150 0.0061 15 6 3.5026 -8.6985 0.0068 16 6 3.0872 -10.1714 -0.1140 17 7 4.1314 -10.4917 0.8771 18 6 3.6521 -11.4891 1.8432 19 6 4.8074 -11.9719 2.6817 20 6 5.5554 -13.0629 2.2803 21 7 6.5682 -13.4920 3.0073 22 6 6.9116 -12.9019 4.1355 23 6 6.2058 -11.8074 4.6046 24 9 6.5592 -11.2107 5.7641 25 6 5.1333 -11.3272 3.8645 26 6 3.9706 -9.1242 1.4055 27 1 -0.4850 0.8401 0.0004 28 1 3.1245 -3.7306 0.8928 29 1 3.1245 -3.7321 -0.8871 30 1 3.8010 -6.1834 0.0051 31 1 1.7222 -7.8761 -0.8839 32 1 1.7216 -7.8742 0.8961 33 1 4.3102 -8.4060 -0.6643 34 1 3.2784 -10.5971 -1.0991 35 1 2.0759 -10.3680 0.2419 36 1 3.2142 -12.3319 1.3083 37 1 2.8987 -11.0372 2.4884 38 1 5.3071 -13.5702 1.3597 39 1 7.7501 -13.2795 4.7020 40 1 4.5670 -10.4720 4.2023 41 1 3.1950 -9.0413 2.1669 42 1 4.9104 -8.6623 1.7081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494526640.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:57 Heat of formation + Delta-G solvation = -35.834917 kcal Electronic energy + Delta-G solvation = -24925.427877 eV Core-core repulsion = 20946.256739 eV Total energy + Delta-G solvation = -3979.171138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.04558 -41.68415 -40.87120 -40.24147 -35.99605 -34.59012 -34.53381 -32.55028 -31.67062 -30.12093 -27.79408 -27.35822 -26.90567 -24.85892 -24.43427 -22.48744 -21.86768 -20.68713 -19.76716 -18.46565 -18.33306 -17.88005 -17.72660 -17.50872 -17.00468 -16.87651 -16.78997 -16.48804 -16.06841 -15.80157 -15.52701 -15.01213 -14.90808 -14.64936 -14.40825 -14.32815 -14.18013 -13.95637 -13.73273 -13.38487 -13.29684 -13.16135 -12.88810 -12.65706 -12.43751 -12.40673 -11.97401 -11.72335 -11.47972 -11.14082 -10.97549 -10.83537 -10.68060 -10.27093 -10.12128 -9.99092 -9.84355 -8.66042 -8.34491 -6.12298 -0.14970 0.00718 1.27874 1.42568 1.47758 1.58108 1.63163 2.26204 2.31127 2.50191 2.91779 2.99696 3.08339 3.29524 3.36792 3.45724 3.61387 3.68019 3.73950 3.86354 3.96722 4.00592 4.24105 4.29002 4.31851 4.34032 4.42681 4.52875 4.60002 4.63879 4.72424 4.76169 4.79748 4.80913 4.89908 4.99695 5.21094 5.31076 5.42270 5.48968 5.56877 5.98094 6.20106 6.52508 6.76075 7.07015 7.26464 8.74628 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.001683 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.729806 B =16628.266649 C =17661.586543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.131 4.131 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.711 5.711 14 C 0.133 3.867 15 C -0.116 4.116 16 C 0.014 3.986 17 N -0.475 5.475 18 C 0.059 3.941 19 C -0.091 4.091 20 C 0.102 3.898 21 N -0.479 5.479 22 C 0.065 3.935 23 C 0.035 3.965 24 F -0.138 7.138 25 C -0.106 4.106 26 C 0.000 4.000 27 H 0.271 0.729 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.416 0.584 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.182 0.818 39 H 0.182 0.818 40 H 0.154 0.846 41 H 0.078 0.922 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.939 -28.262 4.490 31.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.365 5.365 14 C 0.009 3.991 15 C -0.136 4.136 16 C -0.115 4.115 17 N -0.197 5.197 18 C -0.070 4.070 19 C -0.094 4.094 20 C -0.055 4.055 21 N -0.187 5.187 22 C -0.093 4.093 23 C 0.014 3.986 24 F -0.117 7.117 25 C -0.133 4.133 26 C -0.129 4.129 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.253 0.747 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.136 0.864 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.088 0.912 38 H 0.199 0.801 39 H 0.199 0.801 40 H 0.172 0.828 41 H 0.096 0.904 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.960 -29.533 4.062 32.506 hybrid contribution 0.713 2.479 1.034 2.779 sum 13.673 -27.053 5.096 30.738 Atomic orbital electron populations 1.70180 1.07943 1.28585 1.48018 1.26120 0.95967 1.03299 0.93775 0.84963 0.78206 0.76082 0.78789 1.19315 1.20340 1.18220 1.23209 0.95353 0.92047 1.58820 0.89917 1.85558 1.10654 0.99245 1.97051 1.23383 1.03501 0.94543 1.06775 1.20030 0.86231 0.86696 0.75142 1.90691 1.17457 1.86133 1.50298 1.45746 1.10272 1.05128 1.75369 1.21367 0.96249 0.79541 1.01963 1.22879 0.97771 0.94268 0.98646 1.23848 0.95461 0.93206 0.98963 1.68960 1.38197 1.02795 1.09708 1.21679 0.92660 0.98230 0.94394 1.20719 0.98619 0.95804 0.94226 1.23135 0.89783 0.93707 0.98907 1.67809 1.15787 1.29725 1.05383 1.23197 1.00002 0.92145 0.93921 1.18947 0.98395 0.96350 0.84938 1.91522 1.91376 1.82806 1.45946 1.21794 0.96100 1.00636 0.94770 1.24115 1.01877 0.90510 0.96420 0.92008 0.87281 0.87229 0.74672 0.91745 0.92126 0.86408 0.88003 0.89690 0.87235 0.91186 0.80118 0.80111 0.82839 0.90419 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.63 13.22 21.65 0.29 -55.34 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 7 C -0.55 -30.93 9.50 67.95 0.65 -30.28 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 10 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 11 C 0.53 18.64 7.85 87.66 0.69 19.33 16 12 O -0.57 -25.35 15.86 -3.01 -0.05 -25.40 16 13 N -0.71 -15.84 5.56 -463.05 -2.57 -18.41 16 14 C 0.13 2.38 5.59 86.38 0.48 2.87 16 15 C -0.12 -1.26 4.08 -10.45 -0.04 -1.31 16 16 C 0.01 0.12 7.26 83.57 0.61 0.73 16 17 N -0.47 -4.75 6.32 -932.55 -5.89 -10.64 16 18 C 0.06 0.46 4.97 85.56 0.42 0.89 16 19 C -0.09 -1.01 5.48 -19.78 -0.11 -1.12 16 20 C 0.10 1.25 10.86 84.69 0.92 2.17 16 21 N -0.48 -7.57 10.36 -195.65 -2.03 -9.60 16 22 C 0.07 0.93 11.17 84.73 0.95 1.88 16 23 C 0.04 0.52 7.35 22.47 0.17 0.69 16 24 F -0.14 -2.32 17.28 44.97 0.78 -1.54 16 25 C -0.11 -1.35 9.85 22.51 0.22 -1.13 16 26 C 0.00 0.00 7.29 83.57 0.61 0.60 16 27 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 29 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 30 H 0.42 6.54 8.47 -92.71 -0.79 5.75 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.21 7.82 -2.38 -0.02 1.19 16 33 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.08 0.61 7.87 -2.39 -0.02 0.59 16 36 H 0.11 0.51 8.03 -2.39 -0.02 0.49 16 37 H 0.07 0.48 7.25 -2.39 -0.02 0.47 16 38 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 40 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.08 0.81 7.16 -2.39 -0.02 0.79 16 42 H 0.08 0.97 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -78.19 378.69 -1.88 -80.08 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.26 Total: 13.12 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 6.46 Total: -8.05 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -10.20 Total: -93.99 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -78.19 -1.88 -80.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494526640.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.240 kcal (2) G-P(sol) polarization free energy of solvation -78.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds