Wall clock time and date at job start Tue Mar 31 2020 22:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86797 * 120.00044 * 2 1 4 4 H 1.48502 * 109.47271 * 269.99828 * 3 2 1 5 5 H 1.48494 * 109.47141 * 29.99862 * 3 2 1 6 6 H 1.48497 * 109.47027 * 149.99831 * 3 2 1 7 7 C 1.38799 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99610 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00187 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47376 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99871 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99726 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99521 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47243 * 172.70493 * 14 13 11 16 16 H 1.08998 * 109.87648 * 45.48737 * 15 14 13 17 17 C 1.54328 * 109.88647 * 166.66812 * 15 14 13 18 18 C 1.55151 * 102.94243 * 141.60610 * 17 15 14 19 19 C 1.54901 * 101.58849 * 324.49691 * 18 17 15 20 20 N 1.47030 * 109.88197 * 284.47249 * 15 14 13 21 21 C 1.34776 * 125.64550 * 61.67748 * 20 15 14 22 22 O 1.21626 * 119.99895 * 359.29385 * 21 20 15 23 23 C 1.47231 * 119.99997 * 179.29934 * 21 20 15 24 24 C 1.37009 * 127.18667 * 187.40258 * 23 21 20 25 25 N 1.33327 * 106.36687 * 179.97438 * 24 23 21 26 26 N 1.28508 * 109.44006 * 359.97438 * 25 24 23 27 27 N 1.28708 * 110.64016 * 359.75554 * 26 25 24 28 28 H 0.97006 * 126.03807 * 180.26617 * 27 26 25 29 29 H 0.96998 * 119.99709 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47627 * 59.99746 * 10 9 7 31 31 H 1.09001 * 109.47070 * 300.00071 * 10 9 7 32 32 H 0.96999 * 120.00482 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.47479 * 52.70579 * 14 13 11 34 34 H 1.08999 * 109.47678 * 292.70333 * 14 13 11 35 35 H 1.09005 * 110.71768 * 23.24602 * 17 15 14 36 36 H 1.08996 * 110.71987 * 259.97481 * 17 15 14 37 37 H 1.09007 * 111.00505 * 206.41801 * 18 17 15 38 38 H 1.09002 * 111.00166 * 82.57792 * 18 17 15 39 39 H 1.09000 * 110.36807 * 155.84213 * 19 18 17 40 40 H 1.08999 * 110.36961 * 278.17285 * 19 18 17 41 41 H 1.07996 * 126.81929 * 359.92276 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8440 -6.3431 -0.0018 14 6 2.3302 -7.7151 -0.0019 15 6 3.4912 -8.6945 -0.1858 16 1 4.3197 -8.4133 0.4641 17 6 3.0253 -10.1286 0.1430 18 6 3.7583 -10.9850 -0.9230 19 6 3.7385 -10.0392 -2.1495 20 7 3.9320 -8.6896 -1.5884 21 6 4.4310 -7.6275 -2.2512 22 8 4.5353 -6.5540 -1.6890 23 6 4.8499 -7.7667 -3.6558 24 6 5.5001 -6.8356 -4.4222 25 7 5.6751 -7.3918 -5.6212 26 7 5.1790 -8.5773 -5.6192 27 7 4.6766 -8.8570 -4.4677 28 1 4.2488 -9.6913 -4.2191 29 1 -0.4849 0.8401 -0.0004 30 1 3.1244 -3.7314 0.8894 31 1 3.1243 -3.7314 -0.8905 32 1 3.8007 -6.1835 -0.0022 33 1 1.6192 -7.8368 -0.8191 34 1 1.8317 -7.9165 0.9463 35 1 1.9445 -10.2177 0.0327 36 1 3.3363 -10.4142 1.1478 37 1 3.2105 -11.9045 -1.1297 38 1 4.7807 -11.2026 -0.6137 39 1 4.5515 -10.2862 -2.8323 40 1 2.7787 -10.1028 -2.6622 41 1 5.8088 -5.8470 -4.1162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497028559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:40 Heat of formation + Delta-G solvation = 49.991982 kcal Electronic energy + Delta-G solvation = -26936.486524 eV Core-core repulsion = 22980.957081 eV Total energy + Delta-G solvation = -3955.529443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.80472 -40.88745 -38.77008 -38.09977 -34.74686 -33.96375 -32.50705 -32.34926 -31.47242 -30.83110 -28.81521 -26.04860 -25.42866 -24.79202 -23.59193 -22.80629 -21.99661 -20.68065 -20.16649 -18.59993 -17.80647 -17.53373 -17.25209 -16.70230 -16.39118 -15.99689 -15.31863 -15.11716 -14.85101 -14.78361 -14.73183 -14.07198 -13.98488 -13.75831 -13.53504 -13.17641 -12.79841 -12.59025 -12.55197 -12.46906 -12.13749 -11.89349 -11.60901 -11.59878 -11.45226 -11.15539 -10.99708 -10.94349 -10.68846 -10.61100 -9.96385 -9.72921 -9.41694 -9.23400 -8.99105 -8.64817 -8.13248 -6.40255 -6.14036 -3.83273 0.44520 1.86543 1.90217 2.21656 2.59213 3.14256 3.27176 3.28625 3.33688 3.38910 3.54246 3.66235 3.77885 3.98867 4.13690 4.28601 4.29168 4.33209 4.48022 4.57852 4.62898 4.75386 4.84660 5.02528 5.04533 5.20038 5.20940 5.23475 5.34370 5.46452 5.61397 5.67167 5.73451 5.89792 6.07251 6.09072 6.33605 6.66962 6.80855 7.41628 7.67881 7.84208 8.01920 8.43720 8.81534 9.31389 10.93503 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.002911 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.733349 B = 9614.774524 C =11263.537789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.072 0.928 9 S -0.065 6.065 10 C -0.148 4.148 11 C 0.533 3.467 12 O -0.530 6.530 13 N -0.727 5.727 14 C 0.112 3.888 15 C 0.128 3.872 16 H 0.090 0.910 17 C -0.124 4.124 18 C -0.127 4.127 19 C 0.078 3.922 20 N -0.614 5.614 21 C 0.613 3.387 22 O -0.492 6.492 23 C -0.063 4.063 24 C 0.040 3.960 25 N -0.267 5.267 26 N -0.049 5.049 27 N -0.381 5.381 28 H 0.448 0.552 29 H 0.267 0.733 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.409 0.591 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.663 -28.035 -2.897 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.680 4.680 8 H 0.091 0.909 9 S 0.162 5.838 10 C -0.298 4.298 11 C 0.319 3.681 12 O -0.406 6.406 13 N -0.388 5.388 14 C -0.013 4.013 15 C 0.025 3.975 16 H 0.108 0.892 17 C -0.163 4.163 18 C -0.165 4.165 19 C -0.045 4.045 20 N -0.350 5.350 21 C 0.399 3.601 22 O -0.363 6.363 23 C -0.197 4.197 24 C -0.119 4.119 25 N -0.132 5.132 26 N -0.031 5.031 27 N -0.114 5.114 28 H 0.300 0.700 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.250 0.750 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 9.954 -27.974 -4.071 29.969 hybrid contribution 1.871 1.102 1.071 2.421 sum 11.825 -26.871 -3.000 29.511 Atomic orbital electron populations 1.70030 1.05937 1.27300 1.47216 1.24988 0.95018 0.98977 0.94655 0.86174 0.79422 0.81610 0.78340 1.20283 1.20827 1.19686 1.22884 0.94946 0.91695 1.58510 0.90946 1.85304 1.05420 0.96379 1.96713 1.23473 1.06137 0.95303 1.04934 1.20265 0.86351 0.86502 0.74934 1.90670 1.15582 1.85827 1.48545 1.46339 1.11275 1.04296 1.76934 1.21613 0.95107 0.82056 1.02550 1.22024 0.97413 0.96481 0.81579 0.89160 1.22675 1.01807 0.91540 1.00253 1.22751 1.02319 0.97796 0.93659 1.22671 1.01194 0.82622 0.98007 1.48479 1.63470 1.09774 1.13268 1.16335 0.77541 0.83236 0.83017 1.90713 1.53671 1.25440 1.66500 1.22212 1.11578 0.90798 0.95102 1.24028 0.98051 1.01108 0.88708 1.75036 1.17422 1.00514 1.20205 1.78211 1.09992 1.11858 1.03073 1.46321 1.40671 1.15330 1.09079 0.69951 0.92302 0.89540 0.89095 0.74972 0.91253 0.90668 0.89345 0.88818 0.88837 0.89875 0.91131 0.90025 0.77541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.90 13.22 55.49 0.73 -26.17 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 22.07 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -15.76 9.50 30.94 0.29 -15.46 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.64 16 9 S -0.06 -1.84 20.57 -107.50 -2.21 -4.06 16 10 C -0.15 -3.27 6.16 36.01 0.22 -3.05 16 11 C 0.53 10.80 7.85 -10.98 -0.09 10.72 16 12 O -0.53 -12.63 15.83 5.56 0.09 -12.54 16 13 N -0.73 -10.82 4.17 -60.29 -0.25 -11.08 16 14 C 0.11 1.25 5.05 -4.04 -0.02 1.23 16 15 C 0.13 0.87 3.06 -66.95 -0.21 0.67 16 16 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 17 C -0.12 -0.41 6.44 -24.90 -0.16 -0.57 16 18 C -0.13 -0.21 7.08 -24.59 -0.17 -0.39 16 19 C 0.08 0.24 5.48 -2.53 -0.01 0.23 16 20 N -0.61 -4.29 3.06 -164.34 -0.50 -4.80 16 21 C 0.61 6.15 7.63 -12.61 -0.10 6.06 16 22 O -0.49 -6.46 13.21 5.25 0.07 -6.39 16 23 C -0.06 -0.59 6.93 -82.33 -0.57 -1.16 16 24 C 0.04 0.43 11.88 -17.35 -0.21 0.22 16 25 N -0.27 -3.16 12.35 30.47 0.38 -2.79 16 26 N -0.05 -0.51 13.35 60.35 0.81 0.30 16 27 N -0.38 -2.81 6.38 33.31 0.21 -2.60 16 28 H 0.45 1.65 5.41 -190.33 -1.03 0.62 16 29 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 31 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 32 H 0.41 5.68 5.85 -40.82 -0.24 5.44 16 33 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.09 0.29 7.85 -51.93 -0.41 -0.11 16 36 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.09 0.01 8.14 -51.92 -0.42 -0.41 16 38 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.07 0.12 5.64 -51.93 -0.29 -0.17 16 40 H 0.08 0.18 8.12 -51.93 -0.42 -0.24 16 41 H 0.21 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -39.38 357.62 -7.16 -46.54 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.73 Total: 0.61 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.11 Total: 0.53 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 1.37 Total: -47.13 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.16 Total: -18.94 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.21 Total: -4.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -39.38 -7.16 -46.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497028559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.533 kcal (2) G-P(sol) polarization free energy of solvation -39.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds