Wall clock time and date at job start Tue Mar 31 2020 22:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86797 * 120.00044 * 2 1 4 4 H 1.48502 * 109.47271 * 269.99828 * 3 2 1 5 5 H 1.48494 * 109.47141 * 29.99862 * 3 2 1 6 6 H 1.48497 * 109.47027 * 149.99831 * 3 2 1 7 7 C 1.38799 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99610 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00187 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47376 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99871 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99726 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99521 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47243 * 172.70493 * 14 13 11 16 16 H 1.08998 * 109.87648 * 45.48737 * 15 14 13 17 17 C 1.54328 * 109.88647 * 166.66812 * 15 14 13 18 18 C 1.55151 * 102.94243 * 141.60610 * 17 15 14 19 19 C 1.54901 * 101.58849 * 324.49691 * 18 17 15 20 20 N 1.47030 * 109.88197 * 284.47249 * 15 14 13 21 21 C 1.34776 * 125.64550 * 61.67748 * 20 15 14 22 22 O 1.21626 * 119.99895 * 359.29385 * 21 20 15 23 23 C 1.47231 * 119.99997 * 179.29934 * 21 20 15 24 24 C 1.37009 * 127.18667 * 187.40258 * 23 21 20 25 25 N 1.33327 * 106.36687 * 179.97438 * 24 23 21 26 26 N 1.28508 * 109.44006 * 359.97438 * 25 24 23 27 27 N 1.28708 * 110.64016 * 359.75554 * 26 25 24 28 28 H 0.97006 * 126.03807 * 180.26617 * 27 26 25 29 29 H 0.96998 * 119.99709 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47627 * 59.99746 * 10 9 7 31 31 H 1.09001 * 109.47070 * 300.00071 * 10 9 7 32 32 H 0.96999 * 120.00482 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.47479 * 52.70579 * 14 13 11 34 34 H 1.08999 * 109.47678 * 292.70333 * 14 13 11 35 35 H 1.09005 * 110.71768 * 23.24602 * 17 15 14 36 36 H 1.08996 * 110.71987 * 259.97481 * 17 15 14 37 37 H 1.09007 * 111.00505 * 206.41801 * 18 17 15 38 38 H 1.09002 * 111.00166 * 82.57792 * 18 17 15 39 39 H 1.09000 * 110.36807 * 155.84213 * 19 18 17 40 40 H 1.08999 * 110.36961 * 278.17285 * 19 18 17 41 41 H 1.07996 * 126.81929 * 359.92276 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8440 -6.3431 -0.0018 14 6 2.3302 -7.7151 -0.0019 15 6 3.4912 -8.6945 -0.1858 16 1 4.3197 -8.4133 0.4641 17 6 3.0253 -10.1286 0.1430 18 6 3.7583 -10.9850 -0.9230 19 6 3.7385 -10.0392 -2.1495 20 7 3.9320 -8.6896 -1.5884 21 6 4.4310 -7.6275 -2.2512 22 8 4.5353 -6.5540 -1.6890 23 6 4.8499 -7.7667 -3.6558 24 6 5.5001 -6.8356 -4.4222 25 7 5.6751 -7.3918 -5.6212 26 7 5.1790 -8.5773 -5.6192 27 7 4.6766 -8.8570 -4.4677 28 1 4.2488 -9.6913 -4.2191 29 1 -0.4849 0.8401 -0.0004 30 1 3.1244 -3.7314 0.8894 31 1 3.1243 -3.7314 -0.8905 32 1 3.8007 -6.1835 -0.0022 33 1 1.6192 -7.8368 -0.8191 34 1 1.8317 -7.9165 0.9463 35 1 1.9445 -10.2177 0.0327 36 1 3.3363 -10.4142 1.1478 37 1 3.2105 -11.9045 -1.1297 38 1 4.7807 -11.2026 -0.6137 39 1 4.5515 -10.2862 -2.8323 40 1 2.7787 -10.1028 -2.6622 41 1 5.8088 -5.8470 -4.1162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497028559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:40 Heat of formation + Delta-G solvation = 19.205053 kcal Electronic energy + Delta-G solvation = -26937.821546 eV Core-core repulsion = 22980.957081 eV Total energy + Delta-G solvation = -3956.864464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.56208 -41.59915 -40.25735 -38.75926 -35.85692 -34.84093 -34.59183 -33.16143 -32.14445 -31.89115 -30.09801 -27.70224 -26.67515 -25.69841 -24.31930 -23.38077 -22.57139 -21.58796 -21.30719 -19.91066 -19.15589 -18.24866 -18.06777 -17.63417 -17.41460 -17.31437 -16.88844 -16.53570 -16.23217 -15.78331 -15.53090 -15.47921 -14.82275 -14.73002 -14.52666 -14.22825 -14.02839 -13.77182 -13.47627 -13.36159 -13.17344 -12.97141 -12.88140 -12.66483 -12.58598 -12.35118 -12.17232 -11.91783 -11.73489 -11.68254 -11.44057 -11.15003 -10.89268 -10.76075 -10.30164 -10.14841 -9.84305 -8.67558 -8.35393 -6.13602 -0.30754 1.08008 1.21516 1.27156 1.41866 1.46333 1.57925 1.63381 1.66153 1.82904 2.26503 2.37906 2.97500 2.98289 3.29401 3.34560 3.41188 3.64101 3.73991 3.79697 3.93902 4.00067 4.08387 4.12047 4.27312 4.29111 4.41896 4.48585 4.51387 4.64232 4.82904 4.89630 4.92681 5.10397 5.17124 5.29743 5.40777 5.51519 5.53260 6.07084 6.19261 6.47712 6.79664 7.05478 7.06267 7.32932 8.74081 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.002911 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.733349 B = 9614.774524 C =11263.537789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.079 0.921 9 S -0.147 6.147 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.573 6.573 13 N -0.703 5.703 14 C 0.107 3.893 15 C 0.131 3.869 16 H 0.095 0.905 17 C -0.118 4.118 18 C -0.115 4.115 19 C 0.065 3.935 20 N -0.609 5.609 21 C 0.608 3.392 22 O -0.533 6.533 23 C -0.059 4.059 24 C 0.026 3.974 25 N -0.295 5.295 26 N -0.058 5.058 27 N -0.355 5.355 28 H 0.464 0.536 29 H 0.272 0.728 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.416 0.584 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.358 -30.128 -2.514 33.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.696 4.696 8 H 0.097 0.903 9 S 0.081 5.919 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.453 6.453 13 N -0.363 5.363 14 C -0.018 4.018 15 C 0.028 3.972 16 H 0.113 0.887 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.057 4.057 20 N -0.343 5.343 21 C 0.395 3.605 22 O -0.407 6.407 23 C -0.194 4.194 24 C -0.134 4.134 25 N -0.160 5.160 26 N -0.040 5.040 27 N -0.090 5.090 28 H 0.320 0.680 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.259 0.741 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 11.677 -30.183 -3.698 32.574 hybrid contribution 1.348 1.565 0.965 2.280 sum 13.025 -28.618 -2.733 31.561 Atomic orbital electron populations 1.70185 1.07928 1.28636 1.47966 1.26139 0.96017 1.03280 0.93632 0.84940 0.78200 0.75909 0.78847 1.19295 1.19945 1.18271 1.23200 0.95266 0.92138 1.59022 0.90289 1.85414 1.10459 0.99059 1.97012 1.23309 1.03337 0.95069 1.05927 1.19967 0.86175 0.86822 0.75279 1.90650 1.17247 1.86240 1.51159 1.46232 1.10973 1.04846 1.74209 1.21923 0.96846 0.80600 1.02406 1.22119 0.95808 0.97602 0.81656 0.88677 1.22718 1.02184 0.88906 1.01833 1.22779 1.02959 0.97829 0.91721 1.23058 1.02593 0.80714 0.99300 1.48564 1.61679 1.10590 1.13441 1.16436 0.77563 0.83431 0.83106 1.90668 1.55729 1.27131 1.67218 1.22102 1.11273 0.91033 0.95016 1.24245 0.98583 1.01825 0.88739 1.75013 1.18636 1.01270 1.21043 1.78138 1.10407 1.11565 1.03918 1.46288 1.39369 1.15438 1.07939 0.67963 0.91926 0.87922 0.88509 0.74076 0.92782 0.89908 0.89117 0.87059 0.86324 0.89101 0.89523 0.88618 0.77053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.52 13.22 21.65 0.29 -57.23 16 2 C 0.01 0.83 5.49 84.86 0.47 1.29 16 3 Si 1.00 45.26 29.55 68.60 2.03 47.29 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 7 C -0.55 -33.00 9.50 67.95 0.65 -32.35 16 8 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 9 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 10 C -0.13 -5.63 6.16 71.24 0.44 -5.19 16 11 C 0.53 21.90 7.85 87.66 0.69 22.59 16 12 O -0.57 -28.13 15.83 -3.03 -0.05 -28.18 16 13 N -0.70 -20.67 4.17 -463.06 -1.93 -22.60 16 14 C 0.11 2.27 5.05 86.38 0.44 2.70 16 15 C 0.13 1.48 3.06 45.34 0.14 1.62 16 16 H 0.10 1.06 8.11 -2.39 -0.02 1.04 16 17 C -0.12 -0.35 6.44 31.78 0.20 -0.15 16 18 C -0.12 0.13 7.08 31.98 0.23 0.35 16 19 C 0.07 0.17 5.48 86.85 0.48 0.65 16 20 N -0.61 -7.18 3.06 -792.09 -2.43 -9.60 16 21 C 0.61 11.59 7.63 86.61 0.66 12.25 16 22 O -0.53 -13.85 13.21 -4.11 -0.05 -13.90 16 23 C -0.06 -1.06 6.93 40.41 0.28 -0.78 16 24 C 0.03 0.55 11.88 84.18 1.00 1.55 16 25 N -0.30 -6.96 12.35 -57.50 -0.71 -7.67 16 26 N -0.06 -1.14 13.35 37.02 0.49 -0.65 16 27 N -0.35 -4.63 6.38 -48.52 -0.31 -4.93 16 28 H 0.46 2.18 5.41 -219.90 -1.19 0.99 16 29 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.10 4.23 8.14 -2.39 -0.02 4.21 16 31 H 0.10 4.21 8.14 -2.39 -0.02 4.19 16 32 H 0.42 11.28 5.85 -92.71 -0.54 10.73 16 33 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 34 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16 35 H 0.09 0.29 7.85 -2.38 -0.02 0.27 16 36 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.12 -0.60 8.14 -2.38 -0.02 -0.62 16 38 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.09 -0.03 5.64 -2.39 -0.01 -0.04 16 40 H 0.10 0.07 8.12 -2.39 -0.02 0.05 16 41 H 0.21 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -89.33 357.62 1.19 -88.14 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -0.64 Total: 14.60 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.66 Total: 4.53 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -4.60 Total: -102.69 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.10 Total: -42.08 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -89.33 1.19 -88.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497028559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.341 kcal (2) G-P(sol) polarization free energy of solvation -89.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds