Wall clock time and date at job start Tue Mar 31 2020 22:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 120.00243 * 2 1 4 4 H 1.48498 * 109.47093 * 269.99731 * 3 2 1 5 5 H 1.48498 * 109.47167 * 29.99908 * 3 2 1 6 6 H 1.48505 * 109.47024 * 149.99795 * 3 2 1 7 7 C 1.38806 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99911 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99822 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46706 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00647 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99697 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99881 * 179.72613 * 13 11 10 15 15 C 1.53002 * 109.47049 * 187.39346 * 14 13 11 16 16 H 1.08999 * 109.87861 * 314.95639 * 15 14 13 17 17 C 1.54318 * 109.88355 * 193.77793 * 15 14 13 18 18 C 1.55158 * 102.94392 * 218.38989 * 17 15 14 19 19 C 1.54906 * 101.57991 * 35.50521 * 18 17 15 20 20 N 1.47030 * 109.88149 * 75.97210 * 15 14 13 21 21 C 1.34777 * 125.64505 * 298.39483 * 20 15 14 22 22 O 1.21616 * 120.00080 * 2.44776 * 21 20 15 23 23 C 1.47233 * 119.99391 * 182.44599 * 21 20 15 24 24 C 1.37010 * 127.18776 * 172.25472 * 23 21 20 25 25 N 1.33321 * 106.37206 * 179.97438 * 24 23 21 26 26 N 1.28506 * 109.43940 * 359.97438 * 25 24 23 27 27 N 1.28713 * 110.64101 * 359.75282 * 26 25 24 28 28 H 0.97000 * 126.03914 * 180.26124 * 27 26 25 29 29 H 0.97004 * 119.99831 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47123 * 60.00329 * 10 9 7 31 31 H 1.08997 * 109.47357 * 299.99550 * 10 9 7 32 32 H 0.96999 * 120.00420 * 359.97438 * 13 11 10 33 33 H 1.08993 * 109.47422 * 307.39369 * 14 13 11 34 34 H 1.09002 * 109.47261 * 67.39612 * 14 13 11 35 35 H 1.08998 * 110.72279 * 336.75480 * 17 15 14 36 36 H 1.09003 * 110.72102 * 100.03184 * 17 15 14 37 37 H 1.08992 * 111.00661 * 277.42841 * 18 17 15 38 38 H 1.09001 * 111.03783 * 153.59401 * 18 17 15 39 39 H 1.09002 * 110.36638 * 204.14545 * 19 18 17 40 40 H 1.09001 * 110.46017 * 81.87291 * 19 18 17 41 41 H 1.07999 * 126.80988 * 359.92587 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5024 0.0011 13 7 2.8439 -6.3432 0.0018 14 6 2.3301 -7.7151 0.0085 15 6 3.4916 -8.6938 0.1934 16 1 4.3216 -8.4105 -0.4538 17 6 3.0279 -10.1275 -0.1394 18 6 3.7591 -10.9856 0.9267 19 6 3.7352 -10.0420 2.1550 20 7 3.9288 -8.6913 1.5972 21 6 4.4239 -7.6296 2.2638 22 8 4.4978 -6.5471 1.7143 23 6 4.8752 -7.7804 3.6571 24 6 5.5316 -6.8509 4.4201 25 7 5.7384 -7.4186 5.6086 26 7 5.2543 -8.6090 5.6039 27 7 4.7207 -8.8774 4.4638 28 1 4.2877 -9.7099 4.2181 29 1 -0.4850 0.8401 0.0004 30 1 3.1244 -3.7315 0.8906 31 1 3.1244 -3.7315 -0.8894 32 1 3.8007 -6.1837 0.0015 33 1 1.6212 -7.8336 0.8278 34 1 1.8294 -7.9202 -0.9377 35 1 1.9469 -10.2180 -0.0320 36 1 3.3418 -10.4110 -1.1440 37 1 4.7823 -11.2015 0.6197 38 1 3.2121 -11.9061 1.1305 39 1 4.5465 -10.2898 2.8395 40 1 2.7750 -10.1071 2.6668 41 1 5.8242 -5.8561 4.1184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497028560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:43 Heat of formation + Delta-G solvation = 50.826038 kcal Electronic energy + Delta-G solvation = -26930.780583 eV Core-core repulsion = 22975.287308 eV Total energy + Delta-G solvation = -3955.493276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.80599 -40.88527 -38.76594 -38.09811 -34.74850 -33.96281 -32.50501 -32.34848 -31.47256 -30.82817 -28.81310 -26.05008 -25.42709 -24.78705 -23.59544 -22.80650 -21.99730 -20.69000 -20.16411 -18.59546 -17.80245 -17.52560 -17.25403 -16.69552 -16.38582 -15.99222 -15.31612 -15.11330 -14.87004 -14.78557 -14.73108 -14.06896 -13.97548 -13.75428 -13.54092 -13.17036 -12.79180 -12.59059 -12.55277 -12.46385 -12.13785 -11.89252 -11.60610 -11.59845 -11.45022 -11.15531 -10.99803 -10.94241 -10.68661 -10.60577 -9.96371 -9.72745 -9.41546 -9.23077 -8.99070 -8.63963 -8.13081 -6.40115 -6.13966 -3.83152 0.44575 1.86513 1.90075 2.21765 2.59061 3.14396 3.27579 3.28615 3.33659 3.39324 3.54060 3.66309 3.77842 3.99056 4.13654 4.28682 4.29297 4.33171 4.48235 4.57883 4.62807 4.75426 4.84639 5.02585 5.04644 5.20171 5.21020 5.23586 5.34589 5.46562 5.61374 5.67419 5.73768 5.90087 6.07539 6.08988 6.33920 6.67174 6.81285 7.42066 7.67928 7.84133 8.01854 8.43778 8.81955 9.31449 10.93561 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.002904 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.138023 B = 9639.148835 C =11297.759363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.072 0.928 9 S -0.065 6.065 10 C -0.148 4.148 11 C 0.533 3.467 12 O -0.531 6.531 13 N -0.726 5.726 14 C 0.113 3.887 15 C 0.128 3.872 16 H 0.090 0.910 17 C -0.124 4.124 18 C -0.127 4.127 19 C 0.079 3.921 20 N -0.614 5.614 21 C 0.612 3.388 22 O -0.491 6.491 23 C -0.063 4.063 24 C 0.040 3.960 25 N -0.267 5.267 26 N -0.050 5.050 27 N -0.382 5.382 28 H 0.448 0.552 29 H 0.267 0.733 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.408 0.592 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.683 -28.035 2.888 30.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.680 4.680 8 H 0.091 0.909 9 S 0.162 5.838 10 C -0.298 4.298 11 C 0.320 3.680 12 O -0.406 6.406 13 N -0.387 5.387 14 C -0.013 4.013 15 C 0.025 3.975 16 H 0.108 0.892 17 C -0.163 4.163 18 C -0.165 4.165 19 C -0.044 4.044 20 N -0.350 5.350 21 C 0.398 3.602 22 O -0.362 6.362 23 C -0.197 4.197 24 C -0.119 4.119 25 N -0.132 5.132 26 N -0.032 5.032 27 N -0.114 5.114 28 H 0.301 0.699 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.249 0.751 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 9.991 -27.982 4.066 29.989 hybrid contribution 1.848 1.111 -1.068 2.406 sum 11.839 -26.871 2.998 29.516 Atomic orbital electron populations 1.70029 1.05939 1.27299 1.47212 1.24988 0.95016 0.98976 0.94658 0.86177 0.79476 0.81622 0.78290 1.20327 1.20812 1.19650 1.22886 0.94943 0.91695 1.58509 0.90947 1.85306 1.05430 0.96382 1.96713 1.23471 1.06130 0.95307 1.04926 1.20259 0.86346 0.86493 0.74928 1.90670 1.15584 1.85823 1.48570 1.46311 1.11204 1.04293 1.76900 1.21606 0.95089 0.82073 1.02533 1.22024 0.97457 0.96496 0.81514 0.89171 1.22674 1.01828 0.91536 1.00231 1.22749 1.02327 0.97810 0.93644 1.22672 1.01184 0.82602 0.97987 1.48479 1.63631 1.09721 1.13180 1.16341 0.77602 0.83357 0.82899 1.90729 1.54058 1.24726 1.66697 1.22225 1.11450 0.90641 0.95368 1.24027 0.97995 1.01125 0.88772 1.75033 1.17891 1.00110 1.20147 1.78210 1.09526 1.12038 1.03389 1.46345 1.40035 1.15285 1.09773 0.69926 0.92302 0.89082 0.89555 0.75053 0.91262 0.90676 0.89342 0.88821 0.89881 0.88839 0.91208 0.89999 0.77545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.90 13.22 55.49 0.73 -26.17 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 22.07 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -15.76 9.50 30.94 0.29 -15.46 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.07 -1.85 20.57 -107.50 -2.21 -4.06 16 10 C -0.15 -3.26 6.16 36.01 0.22 -3.04 16 11 C 0.53 10.81 7.85 -10.98 -0.09 10.72 16 12 O -0.53 -12.64 15.83 5.56 0.09 -12.55 16 13 N -0.73 -10.80 4.11 -60.29 -0.25 -11.04 16 14 C 0.11 1.25 5.05 -4.04 -0.02 1.23 16 15 C 0.13 0.87 3.07 -66.95 -0.21 0.67 16 16 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 17 C -0.12 -0.41 6.44 -24.90 -0.16 -0.57 16 18 C -0.13 -0.21 7.09 -24.58 -0.17 -0.39 16 19 C 0.08 0.24 5.54 -2.53 -0.01 0.23 16 20 N -0.61 -4.29 3.07 -164.34 -0.50 -4.79 16 21 C 0.61 6.14 7.64 -12.61 -0.10 6.04 16 22 O -0.49 -6.46 13.19 5.26 0.07 -6.40 16 23 C -0.06 -0.59 6.93 -82.33 -0.57 -1.16 16 24 C 0.04 0.42 11.88 -17.35 -0.21 0.22 16 25 N -0.27 -3.16 12.35 30.47 0.38 -2.78 16 26 N -0.05 -0.51 13.35 60.35 0.81 0.30 16 27 N -0.38 -2.80 6.38 33.31 0.21 -2.59 16 28 H 0.45 1.64 5.40 -190.33 -1.03 0.61 16 29 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.09 1.96 8.14 -51.92 -0.42 1.53 16 31 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 32 H 0.41 5.65 5.92 -40.82 -0.24 5.40 16 33 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.09 0.29 7.85 -51.93 -0.41 -0.11 16 36 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 39 H 0.07 0.12 5.53 -51.93 -0.29 -0.17 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.21 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -39.40 357.56 -7.16 -46.56 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.73 Total: 0.57 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.11 Total: 0.53 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 1.38 Total: -47.08 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.16 Total: -18.95 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -2.21 Total: -4.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -39.40 -7.16 -46.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497028560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.383 kcal (2) G-P(sol) polarization free energy of solvation -39.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds