Wall clock time and date at job start Tue Mar 31 2020 22:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 120.00243 * 2 1 4 4 H 1.48498 * 109.47093 * 269.99731 * 3 2 1 5 5 H 1.48498 * 109.47167 * 29.99908 * 3 2 1 6 6 H 1.48505 * 109.47024 * 149.99795 * 3 2 1 7 7 C 1.38806 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99911 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99822 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46706 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00647 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99697 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99881 * 179.72613 * 13 11 10 15 15 C 1.53002 * 109.47049 * 187.39346 * 14 13 11 16 16 H 1.08999 * 109.87861 * 314.95639 * 15 14 13 17 17 C 1.54318 * 109.88355 * 193.77793 * 15 14 13 18 18 C 1.55158 * 102.94392 * 218.38989 * 17 15 14 19 19 C 1.54906 * 101.57991 * 35.50521 * 18 17 15 20 20 N 1.47030 * 109.88149 * 75.97210 * 15 14 13 21 21 C 1.34777 * 125.64505 * 298.39483 * 20 15 14 22 22 O 1.21616 * 120.00080 * 2.44776 * 21 20 15 23 23 C 1.47233 * 119.99391 * 182.44599 * 21 20 15 24 24 C 1.37010 * 127.18776 * 172.25472 * 23 21 20 25 25 N 1.33321 * 106.37206 * 179.97438 * 24 23 21 26 26 N 1.28506 * 109.43940 * 359.97438 * 25 24 23 27 27 N 1.28713 * 110.64101 * 359.75282 * 26 25 24 28 28 H 0.97000 * 126.03914 * 180.26124 * 27 26 25 29 29 H 0.97004 * 119.99831 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47123 * 60.00329 * 10 9 7 31 31 H 1.08997 * 109.47357 * 299.99550 * 10 9 7 32 32 H 0.96999 * 120.00420 * 359.97438 * 13 11 10 33 33 H 1.08993 * 109.47422 * 307.39369 * 14 13 11 34 34 H 1.09002 * 109.47261 * 67.39612 * 14 13 11 35 35 H 1.08998 * 110.72279 * 336.75480 * 17 15 14 36 36 H 1.09003 * 110.72102 * 100.03184 * 17 15 14 37 37 H 1.08992 * 111.00661 * 277.42841 * 18 17 15 38 38 H 1.09001 * 111.03783 * 153.59401 * 18 17 15 39 39 H 1.09002 * 110.36638 * 204.14545 * 19 18 17 40 40 H 1.09001 * 110.46017 * 81.87291 * 19 18 17 41 41 H 1.07999 * 126.80988 * 359.92587 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5024 0.0011 13 7 2.8439 -6.3432 0.0018 14 6 2.3301 -7.7151 0.0085 15 6 3.4916 -8.6938 0.1934 16 1 4.3216 -8.4105 -0.4538 17 6 3.0279 -10.1275 -0.1394 18 6 3.7591 -10.9856 0.9267 19 6 3.7352 -10.0420 2.1550 20 7 3.9288 -8.6913 1.5972 21 6 4.4239 -7.6296 2.2638 22 8 4.4978 -6.5471 1.7143 23 6 4.8752 -7.7804 3.6571 24 6 5.5316 -6.8509 4.4201 25 7 5.7384 -7.4186 5.6086 26 7 5.2543 -8.6090 5.6039 27 7 4.7207 -8.8774 4.4638 28 1 4.2877 -9.7099 4.2181 29 1 -0.4850 0.8401 0.0004 30 1 3.1244 -3.7315 0.8906 31 1 3.1244 -3.7315 -0.8894 32 1 3.8007 -6.1837 0.0015 33 1 1.6212 -7.8336 0.8278 34 1 1.8294 -7.9202 -0.9377 35 1 1.9469 -10.2180 -0.0320 36 1 3.3418 -10.4110 -1.1440 37 1 4.7823 -11.2015 0.6197 38 1 3.2121 -11.9061 1.1305 39 1 4.5465 -10.2898 2.8395 40 1 2.7750 -10.1071 2.6668 41 1 5.8242 -5.8561 4.1184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497028560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:42 Heat of formation + Delta-G solvation = 20.032877 kcal Electronic energy + Delta-G solvation = -26932.115875 eV Core-core repulsion = 22975.287308 eV Total energy + Delta-G solvation = -3956.828567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.56163 -41.59621 -40.25336 -38.75837 -35.85599 -34.84072 -34.59128 -33.15886 -32.14348 -31.88791 -30.09570 -27.70111 -26.67701 -25.69296 -24.32065 -23.38003 -22.57030 -21.58928 -21.31229 -19.90889 -19.15056 -18.24740 -18.05761 -17.63012 -17.40867 -17.31214 -16.88787 -16.53405 -16.22157 -15.78207 -15.54339 -15.48653 -14.81689 -14.72756 -14.52512 -14.22648 -14.02717 -13.76783 -13.46738 -13.35976 -13.17233 -12.97329 -12.87611 -12.66657 -12.58794 -12.35001 -12.17082 -11.91516 -11.73497 -11.68118 -11.43739 -11.14785 -10.88796 -10.75912 -10.30011 -10.14367 -9.83800 -8.67449 -8.35340 -6.13510 -0.30551 1.08188 1.21517 1.27225 1.41853 1.46324 1.58066 1.63718 1.66506 1.82904 2.26573 2.38395 2.97409 2.98329 3.29639 3.34757 3.41164 3.64032 3.74070 3.79639 3.93844 4.00324 4.08616 4.12211 4.27578 4.29325 4.41989 4.48742 4.51679 4.64434 4.83041 4.89896 4.92806 5.10502 5.17310 5.29820 5.40806 5.51951 5.53304 6.07297 6.19293 6.48425 6.79677 7.05520 7.06370 7.33288 8.74123 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.002904 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.138023 B = 9639.148835 C =11297.759363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.079 0.921 9 S -0.147 6.147 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.574 6.574 13 N -0.702 5.702 14 C 0.107 3.893 15 C 0.131 3.869 16 H 0.096 0.904 17 C -0.118 4.118 18 C -0.115 4.115 19 C 0.066 3.934 20 N -0.609 5.609 21 C 0.608 3.392 22 O -0.532 6.532 23 C -0.059 4.059 24 C 0.026 3.974 25 N -0.295 5.295 26 N -0.058 5.058 27 N -0.355 5.355 28 H 0.464 0.536 29 H 0.272 0.728 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.416 0.584 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.390 -30.129 2.493 33.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.696 4.696 8 H 0.097 0.903 9 S 0.080 5.920 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.453 6.453 13 N -0.361 5.361 14 C -0.017 4.017 15 C 0.028 3.972 16 H 0.114 0.886 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.056 4.056 20 N -0.343 5.343 21 C 0.394 3.606 22 O -0.407 6.407 23 C -0.194 4.194 24 C -0.134 4.134 25 N -0.160 5.160 26 N -0.040 5.040 27 N -0.091 5.091 28 H 0.321 0.679 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.259 0.741 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 11.728 -30.192 3.678 32.598 hybrid contribution 1.320 1.574 -0.959 2.267 sum 13.048 -28.618 2.719 31.570 Atomic orbital electron populations 1.70185 1.07931 1.28634 1.47964 1.26140 0.96015 1.03282 0.93634 0.84942 0.78147 0.75895 0.78918 1.19053 1.20045 1.18406 1.23202 0.95261 0.92136 1.59024 0.90291 1.85417 1.10478 0.99067 1.97013 1.23306 1.03325 0.95067 1.05920 1.19962 0.86170 0.86817 0.75276 1.90650 1.17257 1.86239 1.51194 1.46200 1.10910 1.04831 1.74161 1.21913 0.96831 0.80630 1.02367 1.22119 0.95855 0.97611 0.81593 0.88646 1.22716 1.02200 0.88911 1.01811 1.22778 1.02978 0.97843 0.91695 1.23056 1.02561 0.80696 0.99285 1.48564 1.61837 1.10544 1.13348 1.16441 0.77614 0.83535 0.82993 1.90684 1.56123 1.26430 1.67448 1.22110 1.11138 0.90882 0.95270 1.24241 0.98524 1.01835 0.88811 1.75010 1.19106 1.00858 1.20989 1.78138 1.09954 1.11730 1.04219 1.46315 1.38748 1.15390 1.08623 0.67943 0.91927 0.88529 0.87900 0.74139 0.92839 0.89913 0.89129 0.87052 0.89093 0.86333 0.89608 0.88617 0.77069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.53 13.22 21.65 0.29 -57.24 16 2 C 0.01 0.83 5.49 84.86 0.47 1.29 16 3 Si 1.00 45.26 29.55 68.60 2.03 47.29 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.55 -33.01 9.50 67.96 0.65 -32.36 16 8 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 9 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 10 C -0.12 -5.62 6.16 71.24 0.44 -5.18 16 11 C 0.53 21.92 7.85 87.66 0.69 22.60 16 12 O -0.57 -28.18 15.83 -3.03 -0.05 -28.22 16 13 N -0.70 -20.61 4.11 -463.06 -1.90 -22.51 16 14 C 0.11 2.27 5.05 86.38 0.44 2.71 16 15 C 0.13 1.48 3.07 45.34 0.14 1.62 16 16 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 17 C -0.12 -0.35 6.44 31.78 0.20 -0.14 16 18 C -0.12 0.13 7.09 31.99 0.23 0.36 16 19 C 0.07 0.18 5.54 86.85 0.48 0.66 16 20 N -0.61 -7.17 3.07 -792.12 -2.43 -9.59 16 21 C 0.61 11.57 7.64 86.61 0.66 12.23 16 22 O -0.53 -13.88 13.19 -4.08 -0.05 -13.93 16 23 C -0.06 -1.05 6.93 40.41 0.28 -0.77 16 24 C 0.03 0.54 11.88 84.18 1.00 1.54 16 25 N -0.30 -6.95 12.35 -57.50 -0.71 -7.66 16 26 N -0.06 -1.14 13.35 37.02 0.49 -0.64 16 27 N -0.35 -4.61 6.38 -48.52 -0.31 -4.92 16 28 H 0.46 2.16 5.40 -219.90 -1.19 0.97 16 29 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.10 4.21 8.14 -2.39 -0.02 4.19 16 31 H 0.10 4.23 8.14 -2.40 -0.02 4.21 16 32 H 0.42 11.22 5.92 -92.71 -0.55 10.67 16 33 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 34 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 35 H 0.09 0.29 7.85 -2.39 -0.02 0.27 16 36 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.12 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.09 -0.03 5.53 -2.39 -0.01 -0.04 16 40 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.21 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -89.41 357.56 1.22 -88.19 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -0.64 Total: 14.50 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.67 Total: 4.55 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -4.57 Total: -102.57 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.10 Total: -42.15 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -89.41 1.22 -88.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497028560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.226 kcal (2) G-P(sol) polarization free energy of solvation -89.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds