Wall clock time and date at job start Tue Mar 31 2020 22:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31243 * 124.05399 * 2 1 4 4 N 1.27331 * 120.03721 * 180.33960 * 3 2 1 5 5 S 1.56638 * 109.74175 * 359.71743 * 4 3 2 6 6 C 1.38239 * 124.05890 * 179.82905 * 2 1 3 7 7 C 1.47177 * 128.47619 * 359.97438 * 6 2 1 8 8 O 1.21621 * 119.99637 * 359.69833 * 7 6 2 9 9 N 1.34774 * 120.00243 * 179.69690 * 7 6 2 10 10 C 1.46493 * 120.00128 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47399 * 180.02562 * 10 9 7 12 12 C 1.30999 * 120.00428 * 127.16113 * 11 10 9 13 13 C 1.50705 * 119.99829 * 7.55522 * 12 11 10 14 14 N 1.46896 * 109.46884 * 127.00691 * 13 12 11 15 15 C 1.46899 * 110.99738 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47202 * 180.02562 * 15 14 13 17 17 O 1.21300 * 119.99569 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00156 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99951 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00271 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00191 * 179.97438 * 19 18 16 22 22 N 1.31403 * 120.00528 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99764 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47182 * 90.00199 * 23 21 19 25 25 H 1.48508 * 109.47253 * 209.99798 * 23 21 19 26 26 H 1.48505 * 109.47202 * 329.99927 * 23 21 19 27 27 H 1.09004 * 109.46932 * 270.16631 * 1 2 3 28 28 H 1.08997 * 109.47341 * 30.17254 * 1 2 3 29 29 H 1.08997 * 109.46983 * 150.17251 * 1 2 3 30 30 H 0.96997 * 119.99623 * 0.02562 * 9 7 6 31 31 H 1.09000 * 109.46933 * 60.00464 * 10 9 7 32 32 H 1.09009 * 109.47361 * 300.00659 * 10 9 7 33 33 H 1.08001 * 119.99633 * 306.88366 * 11 10 9 34 34 H 1.07995 * 120.00131 * 187.56277 * 12 11 10 35 35 H 1.08998 * 109.47105 * 247.01411 * 13 12 11 36 36 H 1.08999 * 109.47044 * 7.00732 * 13 12 11 37 37 H 1.00901 * 110.99708 * 56.05211 * 14 13 12 38 38 H 1.09003 * 109.47440 * 300.00375 * 15 14 13 39 39 H 1.08997 * 109.46908 * 60.00761 * 15 14 13 40 40 H 0.97002 * 120.00039 * 359.97438 * 18 16 15 41 41 H 0.97003 * 120.00484 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0874 0.0000 4 7 3.5121 0.9982 -0.0065 5 16 3.9366 -0.5096 -0.0064 6 6 2.2812 -1.1453 0.0034 7 6 1.8395 -2.5492 0.0081 8 8 0.6523 -2.8130 0.0150 9 7 2.7506 -3.5423 0.0048 10 6 2.3109 -4.9397 0.0101 11 6 3.5153 -5.8454 0.0055 12 6 3.6319 -6.7849 0.9110 13 6 2.4886 -7.0727 1.8497 14 7 2.1660 -8.5051 1.8036 15 6 1.0537 -8.8236 2.7087 16 6 0.7525 -10.2983 2.6350 17 8 1.4010 -11.0138 1.9009 18 7 -0.2375 -10.8223 3.3846 19 6 -0.5111 -12.1640 3.3179 20 1 0.0663 -12.8011 2.6644 21 6 -1.5313 -12.7043 4.0912 22 7 -1.7940 -13.9902 4.0269 23 14 -2.5296 -11.6025 5.2221 24 1 -3.7053 -11.0727 4.4859 25 1 -2.9925 -12.3868 6.3952 26 1 -1.6846 -10.4723 5.6846 27 1 -0.3633 0.0030 1.0277 28 1 -0.3634 0.8884 -0.5165 29 1 -0.3633 -0.8915 -0.5111 30 1 3.6974 -3.3318 -0.0003 31 1 1.7067 -5.1338 -0.8761 32 1 1.7167 -5.1304 0.9039 33 1 4.2803 -5.7228 -0.7469 34 1 4.5473 -7.3531 0.9848 35 1 2.7737 -6.7969 2.8649 36 1 1.6158 -6.4939 1.5475 37 1 2.9774 -9.0655 2.0173 38 1 1.3293 -8.5600 3.7299 39 1 0.1709 -8.2569 2.4128 40 1 -0.7558 -10.2501 3.9719 41 1 -2.5065 -14.3673 4.5664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497522258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:30 Heat of formation + Delta-G solvation = 34.012262 kcal Electronic energy + Delta-G solvation = -24897.045966 eV Core-core repulsion = 20940.823590 eV Total energy + Delta-G solvation = -3956.222376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.51353 -40.04815 -38.56564 -37.23879 -35.33429 -34.00229 -33.81297 -33.08835 -31.67007 -29.51963 -28.02755 -27.47030 -26.23986 -24.77273 -23.12961 -22.87689 -21.01128 -19.67154 -19.22967 -19.06129 -18.37025 -17.63684 -16.85662 -16.63764 -16.08527 -15.98384 -15.50293 -15.25798 -14.89202 -14.70899 -14.56618 -14.23085 -13.86614 -13.60531 -13.49663 -13.43957 -13.10501 -12.96514 -12.85661 -12.63792 -12.31746 -12.07894 -11.86939 -11.73627 -11.17264 -11.01976 -10.92105 -10.63049 -10.60603 -10.41813 -10.26738 -9.98940 -9.85688 -9.58819 -9.37726 -8.62521 -8.21751 -8.17032 -6.32340 -3.83964 -0.83608 0.23569 0.89760 1.39437 1.60744 2.42940 2.62988 3.01530 3.06568 3.14586 3.34047 3.71739 3.99842 4.08532 4.11322 4.18492 4.41226 4.66466 4.76944 4.84357 4.99349 5.12864 5.14566 5.20733 5.24082 5.35578 5.43428 5.54224 5.59871 5.65875 5.76165 5.79438 5.90696 6.20693 6.41559 6.77970 6.98990 7.10243 7.48369 7.49353 7.56584 8.12845 8.58094 8.93440 9.40867 9.80640 10.80669 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.001694 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.635419 B =16525.369695 C =17589.192748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.106 3.894 3 N -0.249 5.249 4 N -0.249 5.249 5 S 0.414 5.586 6 C -0.295 4.295 7 C 0.601 3.399 8 O -0.509 6.509 9 N -0.716 5.716 10 C 0.141 3.859 11 C -0.187 4.187 12 C -0.105 4.105 13 C 0.068 3.932 14 N -0.662 5.662 15 C 0.047 3.953 16 C 0.449 3.551 17 O -0.565 6.565 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.400 0.600 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.039 0.961 36 H 0.086 0.914 37 H 0.352 0.648 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.371 0.629 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.414 29.611 -6.052 32.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 N -0.116 5.116 4 N -0.230 5.230 5 S 0.550 5.450 6 C -0.436 4.436 7 C 0.384 3.616 8 O -0.384 6.384 9 N -0.368 5.368 10 C 0.019 3.981 11 C -0.207 4.207 12 C -0.125 4.125 13 C -0.061 4.061 14 N -0.295 5.295 15 C -0.086 4.086 16 C 0.235 3.765 17 O -0.447 6.447 18 N -0.229 5.229 19 C -0.435 4.435 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.234 0.766 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.171 0.829 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.203 0.797 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.074 29.896 -7.029 33.000 hybrid contribution -1.136 0.290 1.830 2.174 sum 10.938 30.187 -5.199 32.525 Atomic orbital electron populations 1.20578 0.83535 1.05220 1.04623 1.23020 1.00358 0.84943 0.95814 1.70644 0.96854 1.27952 1.16125 1.78918 1.09503 1.15472 1.19075 1.82523 1.09738 1.01801 1.50952 1.27739 0.98170 0.99935 1.17760 1.16410 0.85972 0.81907 0.77262 1.90858 1.15672 1.82940 1.48978 1.45868 1.09352 1.06384 1.75149 1.20621 0.95850 0.77586 1.04006 1.22637 0.99294 0.99175 0.99563 1.22875 0.98230 0.96668 0.94696 1.21307 0.96930 0.90828 0.97014 1.60098 1.10881 1.03156 1.55365 1.21733 0.95786 0.96397 0.94656 1.19673 0.83731 0.88672 0.84419 1.90569 1.51458 1.61359 1.41281 1.42201 1.31685 1.09546 1.39478 1.19432 1.16857 0.82187 1.24976 0.86265 1.25040 0.97339 0.95887 0.97878 1.69617 1.31119 1.10815 1.40496 0.86671 0.80998 0.80483 0.81214 1.19536 1.20183 1.19542 0.89069 0.89687 0.87891 0.76595 0.89915 0.89421 0.86130 0.86286 0.94324 0.89607 0.82874 0.93658 0.89322 0.79663 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 9.89 36.01 0.36 -0.18 16 2 C 0.11 0.89 7.00 -82.84 -0.58 0.31 16 3 N -0.25 -2.39 11.54 33.42 0.39 -2.00 16 4 N -0.25 -2.19 12.51 60.35 0.75 -1.43 16 5 S 0.41 2.26 23.05 -107.50 -2.48 -0.22 16 6 C -0.30 -2.22 6.81 -35.95 -0.24 -2.46 16 7 C 0.60 5.14 7.80 -12.63 -0.10 5.04 16 8 O -0.51 -5.90 14.90 5.26 0.08 -5.82 16 9 N -0.72 -4.58 5.54 -62.65 -0.35 -4.93 16 10 C 0.14 1.08 5.76 -5.20 -0.03 1.05 16 11 C -0.19 -1.29 9.63 -36.03 -0.35 -1.63 16 12 C -0.11 -0.88 9.77 -36.02 -0.35 -1.23 16 13 C 0.07 0.70 5.77 -4.98 -0.03 0.67 16 14 N -0.66 -9.62 6.12 -116.34 -0.71 -10.33 16 15 C 0.05 0.75 6.17 -4.97 -0.03 0.72 16 16 C 0.45 10.05 7.82 -10.99 -0.09 9.97 16 17 O -0.56 -14.99 15.78 5.54 0.09 -14.91 16 18 N -0.59 -13.92 5.09 -10.96 -0.06 -13.98 16 19 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 23 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.77 6.48 -51.93 -0.34 0.44 16 30 H 0.40 1.51 7.89 -40.82 -0.32 1.19 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.75 5.30 -51.92 -0.28 0.48 16 33 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.87 5.29 -51.93 -0.27 0.59 16 37 H 0.35 5.21 8.42 -39.29 -0.33 4.88 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -35.30 368.83 -7.07 -42.37 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.71 Total: 11.48 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.69 Total: 4.51 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.80 Total: -57.51 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.17 Total: -20.73 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.48 Total: -0.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.30 -7.07 -42.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497522258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.382 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds