Wall clock time and date at job start Tue Mar 31 2020 22:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31243 * 124.05399 * 2 1 4 4 N 1.27331 * 120.03721 * 180.33960 * 3 2 1 5 5 S 1.56638 * 109.74175 * 359.71743 * 4 3 2 6 6 C 1.38239 * 124.05890 * 179.82905 * 2 1 3 7 7 C 1.47177 * 128.47619 * 359.97438 * 6 2 1 8 8 O 1.21621 * 119.99637 * 359.69833 * 7 6 2 9 9 N 1.34774 * 120.00243 * 179.69690 * 7 6 2 10 10 C 1.46493 * 120.00128 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47399 * 180.02562 * 10 9 7 12 12 C 1.30999 * 120.00428 * 127.16113 * 11 10 9 13 13 C 1.50705 * 119.99829 * 7.55522 * 12 11 10 14 14 N 1.46896 * 109.46884 * 127.00691 * 13 12 11 15 15 C 1.46899 * 110.99738 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47202 * 180.02562 * 15 14 13 17 17 O 1.21300 * 119.99569 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00156 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99951 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00271 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00191 * 179.97438 * 19 18 16 22 22 N 1.31403 * 120.00528 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99764 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47182 * 90.00199 * 23 21 19 25 25 H 1.48508 * 109.47253 * 209.99798 * 23 21 19 26 26 H 1.48505 * 109.47202 * 329.99927 * 23 21 19 27 27 H 1.09004 * 109.46932 * 270.16631 * 1 2 3 28 28 H 1.08997 * 109.47341 * 30.17254 * 1 2 3 29 29 H 1.08997 * 109.46983 * 150.17251 * 1 2 3 30 30 H 0.96997 * 119.99623 * 0.02562 * 9 7 6 31 31 H 1.09000 * 109.46933 * 60.00464 * 10 9 7 32 32 H 1.09009 * 109.47361 * 300.00659 * 10 9 7 33 33 H 1.08001 * 119.99633 * 306.88366 * 11 10 9 34 34 H 1.07995 * 120.00131 * 187.56277 * 12 11 10 35 35 H 1.08998 * 109.47105 * 247.01411 * 13 12 11 36 36 H 1.08999 * 109.47044 * 7.00732 * 13 12 11 37 37 H 1.00901 * 110.99708 * 56.05211 * 14 13 12 38 38 H 1.09003 * 109.47440 * 300.00375 * 15 14 13 39 39 H 1.08997 * 109.46908 * 60.00761 * 15 14 13 40 40 H 0.97002 * 120.00039 * 359.97438 * 18 16 15 41 41 H 0.97003 * 120.00484 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0874 0.0000 4 7 3.5121 0.9982 -0.0065 5 16 3.9366 -0.5096 -0.0064 6 6 2.2812 -1.1453 0.0034 7 6 1.8395 -2.5492 0.0081 8 8 0.6523 -2.8130 0.0150 9 7 2.7506 -3.5423 0.0048 10 6 2.3109 -4.9397 0.0101 11 6 3.5153 -5.8454 0.0055 12 6 3.6319 -6.7849 0.9110 13 6 2.4886 -7.0727 1.8497 14 7 2.1660 -8.5051 1.8036 15 6 1.0537 -8.8236 2.7087 16 6 0.7525 -10.2983 2.6350 17 8 1.4010 -11.0138 1.9009 18 7 -0.2375 -10.8223 3.3846 19 6 -0.5111 -12.1640 3.3179 20 1 0.0663 -12.8011 2.6644 21 6 -1.5313 -12.7043 4.0912 22 7 -1.7940 -13.9902 4.0269 23 14 -2.5296 -11.6025 5.2221 24 1 -3.7053 -11.0727 4.4859 25 1 -2.9925 -12.3868 6.3952 26 1 -1.6846 -10.4723 5.6846 27 1 -0.3633 0.0030 1.0277 28 1 -0.3634 0.8884 -0.5165 29 1 -0.3633 -0.8915 -0.5111 30 1 3.6974 -3.3318 -0.0003 31 1 1.7067 -5.1338 -0.8761 32 1 1.7167 -5.1304 0.9039 33 1 4.2803 -5.7228 -0.7469 34 1 4.5473 -7.3531 0.9848 35 1 2.7737 -6.7969 2.8649 36 1 1.6158 -6.4939 1.5475 37 1 2.9774 -9.0655 2.0173 38 1 1.3293 -8.5600 3.7299 39 1 0.1709 -8.2569 2.4128 40 1 -0.7558 -10.2501 3.9719 41 1 -2.5065 -14.3673 4.5664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497522258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:30 Heat of formation + Delta-G solvation = 3.787168 kcal Electronic energy + Delta-G solvation = -24898.356624 eV Core-core repulsion = 20940.823590 eV Total energy + Delta-G solvation = -3957.533034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.09996 -40.70477 -40.29939 -38.09194 -36.34288 -35.82205 -34.40806 -33.96762 -33.69469 -30.19901 -29.13314 -28.07112 -27.20602 -26.12981 -24.37224 -23.47567 -21.63241 -21.32622 -20.46815 -19.84748 -19.58937 -18.42575 -17.73318 -17.36659 -17.21634 -16.97632 -16.66801 -16.51275 -15.92013 -15.73894 -15.33119 -15.25445 -15.08109 -14.83965 -14.44868 -14.27267 -14.13448 -13.98794 -13.91209 -13.56123 -13.42796 -13.24665 -12.98931 -12.72775 -12.58701 -12.40835 -11.97610 -11.68166 -11.55121 -11.51293 -11.23066 -10.98843 -10.81242 -10.47590 -10.43908 -10.24706 -10.02182 -9.25015 -8.41094 -6.02097 -1.40545 -0.28379 0.36445 0.78870 1.00437 1.30594 1.36415 1.44889 1.79905 1.95551 2.03404 2.23305 2.77969 2.80831 3.15252 3.44179 3.54828 3.61114 3.77719 4.06929 4.14454 4.22148 4.29354 4.43108 4.49232 4.53460 4.65331 4.69961 4.75388 4.79068 4.97072 5.11281 5.22880 5.52191 5.61313 5.80707 5.90990 6.04003 6.24806 6.39107 6.54051 6.59795 6.88126 6.91677 7.39855 7.96226 8.76425 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.001694 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.635419 B =16525.369695 C =17589.192748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.096 3.904 3 N -0.277 5.277 4 N -0.286 5.286 5 S 0.509 5.491 6 C -0.313 4.313 7 C 0.603 3.397 8 O -0.544 6.544 9 N -0.701 5.701 10 C 0.140 3.860 11 C -0.167 4.167 12 C -0.123 4.123 13 C 0.070 3.930 14 N -0.683 5.683 15 C 0.061 3.939 16 C 0.448 3.552 17 O -0.614 6.614 18 N -0.591 5.591 19 C -0.330 4.330 20 H 0.056 0.944 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.230 1.230 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.414 0.586 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.347 0.653 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.390 0.610 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.028 32.642 -4.928 35.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 N -0.142 5.142 4 N -0.267 5.267 5 S 0.645 5.355 6 C -0.453 4.453 7 C 0.387 3.613 8 O -0.422 6.422 9 N -0.354 5.354 10 C 0.018 3.982 11 C -0.186 4.186 12 C -0.142 4.142 13 C -0.058 4.058 14 N -0.315 5.315 15 C -0.071 4.071 16 C 0.236 3.764 17 O -0.499 6.499 18 N -0.233 5.233 19 C -0.459 4.459 20 H 0.074 0.926 21 C -0.214 4.214 22 N -0.574 5.574 23 Si 0.784 3.216 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.154 1.154 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.251 0.749 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.165 0.835 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.225 0.775 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.740 32.977 -5.910 35.843 hybrid contribution -1.145 -0.731 1.349 1.915 sum 11.595 32.246 -4.561 34.569 Atomic orbital electron populations 1.20580 0.83016 1.05191 1.04987 1.23245 1.01022 0.85106 0.95808 1.70699 0.97180 1.28754 1.17522 1.78633 1.09560 1.18181 1.20290 1.82095 1.06844 0.98926 1.47646 1.27727 0.99934 0.99339 1.18348 1.16515 0.85675 0.82431 0.76725 1.90842 1.17180 1.83514 1.50709 1.45712 1.09905 1.05627 1.74121 1.20563 0.96166 0.78206 1.03257 1.22751 0.98984 0.97942 0.98949 1.22857 0.98175 0.97897 0.95275 1.21355 0.97920 0.88007 0.98506 1.60096 1.10441 1.05647 1.55343 1.21646 0.97503 0.90911 0.97090 1.20996 0.81859 0.91366 0.82208 1.90545 1.52819 1.63571 1.42919 1.42036 1.32700 1.07944 1.40576 1.19013 1.17484 0.84049 1.25342 0.92632 1.26115 0.98137 0.97697 0.99421 1.69799 1.32165 1.13564 1.41897 0.85372 0.79210 0.78958 0.78019 1.18255 1.20015 1.15370 0.88517 0.88689 0.88832 0.74881 0.90824 0.90180 0.83828 0.85519 0.92868 0.89333 0.83461 0.90362 0.86972 0.77461 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 9.89 71.24 0.70 -0.32 16 2 C 0.10 1.54 7.00 42.65 0.30 1.84 16 3 N -0.28 -5.09 11.54 -48.18 -0.56 -5.65 16 4 N -0.29 -4.62 12.51 37.02 0.46 -4.16 16 5 S 0.51 4.29 23.05 -56.49 -1.30 2.99 16 6 C -0.31 -4.22 6.81 24.62 0.17 -4.05 16 7 C 0.60 9.37 7.80 86.59 0.68 10.04 16 8 O -0.54 -12.25 14.90 -4.10 -0.06 -12.31 16 9 N -0.70 -7.24 5.54 -470.37 -2.61 -9.85 16 10 C 0.14 1.82 5.76 85.63 0.49 2.31 16 11 C -0.17 -1.79 9.63 25.65 0.25 -1.54 16 12 C -0.12 -1.72 9.77 25.65 0.25 -1.47 16 13 C 0.07 1.24 5.77 85.56 0.49 1.74 16 14 N -0.68 -18.57 6.12 -521.98 -3.19 -21.77 16 15 C 0.06 1.78 6.17 85.56 0.53 2.31 16 16 C 0.45 19.93 7.82 87.66 0.69 20.61 16 17 O -0.61 -33.71 15.78 -3.09 -0.05 -33.76 16 18 N -0.59 -27.65 5.09 -306.98 -1.56 -29.21 16 19 C -0.33 -19.29 10.16 84.04 0.85 -18.43 16 20 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 21 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 22 N -0.93 -56.22 13.96 21.66 0.30 -55.92 16 23 Si 0.96 38.60 27.74 68.60 1.90 40.50 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 25 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.23 -7.69 6.52 99.48 0.65 -7.05 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.42 6.48 -2.39 -0.02 1.40 16 30 H 0.41 1.73 7.89 -92.71 -0.73 1.00 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.20 5.30 -2.38 -0.01 1.19 16 33 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 1.54 5.29 -2.39 -0.01 1.53 16 37 H 0.35 9.93 8.42 -89.69 -0.76 9.18 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.11 2.81 8.14 -2.39 -0.02 2.80 16 40 H 0.39 15.03 5.76 -92.71 -0.53 14.50 16 41 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -82.85 368.83 -1.75 -84.60 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.95 Total: 31.85 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 5.87 Total: 12.69 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -7.15 Total: -126.56 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.11 Total: -46.07 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.90 Total: 40.50 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.30 Total: 2.99 kcal Total: -82.85 -1.75 -84.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497522258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.387 kcal (2) G-P(sol) polarization free energy of solvation -82.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds