Wall clock time and date at job start Tue Mar 31 2020 22:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33320 * 126.81421 * 2 1 4 4 N 1.28508 * 109.44102 * 180.02562 * 3 2 1 5 5 N 1.28714 * 110.63887 * 0.02562 * 4 3 2 6 6 H 0.97001 * 126.04313 * 179.73086 * 5 4 3 7 7 C 1.37010 * 126.81454 * 180.02562 * 2 1 3 8 8 C 1.47226 * 127.18551 * 0.02562 * 7 2 1 9 9 O 1.21625 * 120.00386 * 359.97438 * 8 7 2 10 10 N 1.34783 * 120.00004 * 179.97438 * 8 7 2 11 11 C 1.47064 * 136.05429 * 359.62323 * 10 8 7 12 12 C 1.53230 * 88.08528 * 207.20850 * 11 10 8 13 13 C 1.52999 * 114.32712 * 220.47616 * 12 11 10 14 14 N 1.46502 * 109.46874 * 268.75409 * 13 12 11 15 15 C 1.34777 * 119.99957 * 179.97438 * 14 13 12 16 16 O 1.21284 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00307 * 180.02562 * 15 14 13 18 18 S 1.80994 * 109.47483 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00036 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00072 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99883 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00060 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46960 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47354 * 119.99786 * 23 21 19 26 26 H 1.48504 * 109.47071 * 240.00175 * 23 21 19 27 27 C 1.47063 * 136.05829 * 180.02562 * 10 8 7 28 28 H 1.08999 * 109.47529 * 89.97151 * 1 2 3 29 29 H 1.09002 * 109.47349 * 209.97886 * 1 2 3 30 30 H 1.09010 * 109.46760 * 329.97124 * 1 2 3 31 31 H 1.08999 * 113.47099 * 321.94642 * 11 10 8 32 32 H 1.09005 * 113.46252 * 92.37562 * 11 10 8 33 33 H 1.08996 * 114.19876 * 87.72530 * 12 11 10 34 34 H 1.08998 * 109.47320 * 28.75397 * 13 12 11 35 35 H 1.09003 * 109.47411 * 148.75645 * 13 12 11 36 36 H 0.97000 * 120.00011 * 0.02562 * 14 13 12 37 37 H 1.08998 * 109.46793 * 300.00328 * 17 15 14 38 38 H 1.09003 * 109.46903 * 59.99942 * 17 15 14 39 39 H 0.97003 * 119.99987 * 179.97438 * 22 21 19 40 40 H 1.09000 * 113.46569 * 267.62072 * 27 10 8 41 41 H 1.08999 * 113.46843 * 38.06316 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5323 0.6836 -0.0005 5 7 3.6057 -0.6014 -0.0015 6 1 4.4212 -1.1266 -0.0057 7 6 2.3280 -1.0969 -0.0005 8 6 1.9222 -2.5121 -0.0016 9 8 0.7421 -2.8064 -0.0018 10 7 2.8585 -3.4817 -0.0025 11 6 4.3281 -3.5344 -0.0094 12 6 4.2248 -4.8963 -0.7040 13 6 5.2293 -5.9365 -0.2044 14 7 6.4458 -5.8708 -1.0181 15 6 7.4758 -6.7005 -0.7586 16 8 7.3954 -7.5017 0.1483 17 6 8.7274 -6.6326 -1.5952 18 16 9.9157 -7.8633 -1.0042 19 6 11.2426 -7.5707 -2.1260 20 1 11.1501 -6.8076 -2.8846 21 6 12.4072 -8.3202 -2.0340 22 7 12.5206 -9.2492 -1.1084 23 14 13.8142 -8.0096 -3.2228 24 1 13.4392 -6.9202 -4.1598 25 1 15.0266 -7.6134 -2.4622 26 1 14.0951 -9.2485 -3.9919 27 6 2.8600 -4.9523 -0.0042 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5143 31 1 4.7872 -2.7655 -0.6308 32 1 4.7652 -3.5876 0.9878 33 1 4.1673 -4.8401 -1.7910 34 1 5.4773 -5.7313 0.8370 35 1 4.7920 -6.9317 -0.2844 36 1 6.5103 -5.2298 -1.7432 37 1 8.4797 -6.8380 -2.6366 38 1 9.1644 -5.6372 -1.5151 39 1 13.3343 -9.7733 -1.0444 40 1 2.9017 -5.3874 0.9943 41 1 2.0734 -5.3865 -0.6213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498474005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:52 Heat of formation + Delta-G solvation = 63.010044 kcal Electronic energy + Delta-G solvation = -25376.317813 eV Core-core repulsion = 21421.352875 eV Total energy + Delta-G solvation = -3954.964937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.92450 -41.19564 -39.32208 -38.52229 -34.87910 -34.44564 -32.99591 -32.49720 -31.33971 -29.52224 -28.26123 -26.96953 -26.26042 -25.49991 -24.39472 -22.58108 -21.48633 -20.74592 -20.28207 -18.71481 -17.96610 -17.41779 -17.09926 -16.86558 -16.72844 -16.36994 -15.55530 -15.46175 -14.86786 -14.69448 -14.33557 -14.27491 -13.92559 -13.71271 -13.52426 -13.31196 -13.23613 -13.20023 -12.87506 -12.60230 -12.37697 -12.02681 -11.93749 -11.69781 -11.34627 -11.12508 -11.10154 -11.09287 -10.82539 -10.69122 -9.89901 -9.88073 -9.59386 -9.46983 -9.16073 -9.09428 -8.32156 -6.58309 -6.28718 -3.99942 0.30103 1.72885 1.76217 1.98362 2.43518 2.84874 2.93396 3.16637 3.20617 3.25894 3.39197 3.50834 3.66372 3.79268 4.08746 4.13609 4.17226 4.29349 4.43885 4.52705 4.53577 4.67279 4.90223 4.97362 5.02278 5.06884 5.17360 5.22567 5.23589 5.38664 5.41710 5.51167 5.67028 5.77450 5.78010 6.00953 6.02790 6.37933 6.81269 7.27666 7.48910 7.53394 7.73025 8.28377 8.43657 9.17012 10.78710 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022166 B = 0.001757 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.909824 B =15936.388399 C =16911.646520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.064 3.936 3 N -0.268 5.268 4 N -0.040 5.040 5 N -0.375 5.375 6 H 0.449 0.551 7 C -0.071 4.071 8 C 0.627 3.373 9 O -0.508 6.508 10 N -0.648 5.648 11 C 0.087 3.913 12 C -0.130 4.130 13 C 0.133 3.867 14 N -0.741 5.741 15 C 0.533 3.467 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.279 1.279 27 C 0.120 3.880 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.098 0.902 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.934 15.210 0.808 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 N -0.135 5.135 4 N -0.022 5.022 5 N -0.104 5.104 6 H 0.298 0.702 7 C -0.204 4.204 8 C 0.415 3.585 9 O -0.381 6.381 10 N -0.384 5.384 11 C -0.036 4.036 12 C -0.150 4.150 13 C 0.008 3.992 14 N -0.396 5.396 15 C 0.319 3.681 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.002 4.002 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.115 15.108 2.431 26.893 hybrid contribution 1.309 0.207 -2.147 2.523 sum -20.805 15.316 0.284 25.836 Atomic orbital electron populations 1.20351 0.84605 1.04583 1.04003 1.22399 0.98737 0.86815 0.99645 1.75000 0.95137 1.25839 1.17497 1.78238 1.16030 0.92229 1.15686 1.45777 1.08933 1.07060 1.48649 0.70202 1.21938 0.85156 0.95916 1.17431 1.16101 0.84448 0.81249 0.76720 1.90867 1.15696 1.81482 1.50068 1.49430 1.07412 1.08119 1.73489 1.23425 0.80279 0.98025 1.01886 1.23171 0.95715 0.94352 1.01745 1.21142 0.84039 0.98595 0.95442 1.45980 1.15973 1.40741 1.36910 1.20336 0.83821 0.79682 0.84288 1.90721 1.81072 1.36327 1.30705 1.23533 0.97613 1.06932 1.02412 1.85417 1.09694 1.43101 1.45151 1.22897 1.01808 1.24389 1.19374 0.90848 1.24997 0.98097 0.94459 0.96017 1.70020 1.27614 1.20661 1.31904 0.86115 0.80915 0.78306 0.80146 1.19618 1.20534 1.20529 1.23009 0.96598 0.78820 1.01763 0.89727 0.88767 0.90012 0.90727 0.87902 0.86470 0.90770 0.90327 0.76746 0.89156 0.89188 0.92173 0.88375 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 9.93 36.01 0.36 -0.18 16 2 C 0.06 0.60 7.30 -82.39 -0.60 0.00 16 3 N -0.27 -2.89 12.35 33.51 0.41 -2.48 16 4 N -0.04 -0.39 13.35 60.35 0.81 0.41 16 5 N -0.37 -2.63 6.89 33.31 0.23 -2.40 16 6 H 0.45 1.70 6.08 -190.33 -1.16 0.54 16 7 C -0.07 -0.59 7.12 -82.33 -0.59 -1.18 16 8 C 0.63 5.41 8.06 -12.61 -0.10 5.31 16 9 O -0.51 -5.73 15.77 5.26 0.08 -5.65 16 10 N -0.65 -3.87 3.69 -186.76 -0.69 -4.56 16 11 C 0.09 0.30 6.94 -8.65 -0.06 0.24 16 12 C -0.13 -0.52 4.09 -90.25 -0.37 -0.88 16 13 C 0.13 0.95 5.59 -4.04 -0.02 0.92 16 14 N -0.74 -7.14 5.56 -60.29 -0.33 -7.48 16 15 C 0.53 8.52 7.85 -10.98 -0.09 8.43 16 16 O -0.51 -10.47 15.86 5.55 0.09 -10.38 16 17 C -0.15 -2.80 6.16 36.01 0.22 -2.58 16 18 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 19 C -0.54 -14.71 9.50 30.94 0.29 -14.42 16 20 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 21 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 22 N -0.87 -25.44 13.22 55.49 0.73 -24.70 16 23 Si 0.92 20.78 29.55 -169.99 -5.02 15.76 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.12 0.56 8.20 -8.52 -0.07 0.49 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.70 6.61 -51.93 -0.34 0.36 16 30 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.07 0.13 6.50 -51.93 -0.34 -0.21 16 32 H 0.10 0.27 7.88 -51.93 -0.41 -0.14 16 33 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.56 7.81 -51.93 -0.41 0.16 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.40 2.64 8.47 -40.82 -0.35 2.30 16 37 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 38 H 0.09 1.49 8.14 -51.92 -0.42 1.06 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 40 H 0.10 0.38 8.10 -51.93 -0.42 -0.04 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -37.47 368.92 -7.39 -44.86 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.92 Total: -3.27 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.12 Total: -1.91 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 1.16 Total: -41.20 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.17 Total: -16.03 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.47 -7.39 -44.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498474005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.869 kcal (2) G-P(sol) polarization free energy of solvation -37.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds