Wall clock time and date at job start Tue Mar 31 2020 22:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46981 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47072 * 300.00335 * 3 2 1 6 6 H 1.48495 * 109.46829 * 60.00193 * 3 2 1 7 7 C 1.38795 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00174 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00206 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00324 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47498 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99609 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00097 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99976 * 179.97438 * 13 11 10 15 15 C 1.52988 * 109.47306 * 179.97438 * 14 13 11 16 16 C 1.53500 * 114.20813 * 185.00211 * 15 14 13 17 17 N 1.47074 * 87.98480 * 220.14828 * 16 15 14 18 18 C 1.34778 * 136.05522 * 207.07880 * 17 16 15 19 19 O 1.21280 * 120.00033 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.99643 * 180.02562 * 18 17 16 21 21 C 1.50703 * 109.46943 * 180.02562 * 20 18 17 22 22 N 1.33233 * 125.52686 * 89.99782 * 21 20 18 23 23 C 1.30834 * 109.82996 * 180.02562 * 22 21 20 24 24 N 1.34429 * 108.07543 * 0.02562 * 23 22 21 25 25 H 0.97003 * 126.82753 * 179.97438 * 24 23 22 26 26 N 1.30708 * 125.52235 * 270.04470 * 21 20 18 27 27 C 1.47067 * 87.88541 * 27.34082 * 17 16 15 28 28 H 0.96996 * 120.00602 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47302 * 59.99551 * 10 9 7 30 30 H 1.08997 * 109.46824 * 300.00310 * 10 9 7 31 31 H 0.97001 * 120.00235 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.46604 * 59.99587 * 14 13 11 33 33 H 1.08995 * 109.47187 * 300.00563 * 14 13 11 34 34 H 1.09004 * 113.28635 * 318.07078 * 15 14 13 35 35 H 1.08996 * 113.46886 * 105.37390 * 16 15 14 36 36 H 1.09000 * 113.52050 * 334.93695 * 16 15 14 37 37 H 1.08993 * 109.46656 * 60.00225 * 20 18 17 38 38 H 1.09000 * 109.47151 * 300.00224 * 20 18 17 39 39 H 1.07995 * 125.96739 * 179.74246 * 23 22 21 40 40 H 1.09000 * 113.46799 * 87.43468 * 27 17 16 41 41 H 1.08994 * 113.46580 * 217.87720 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9876 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0010 13 7 2.8443 -6.3430 -0.0003 14 6 2.3307 -7.7151 0.0009 15 6 3.5026 -8.6984 -0.0005 16 6 3.0882 -10.1715 -0.1215 17 7 4.1305 -10.4919 0.8654 18 6 4.8956 -11.5628 1.1558 19 8 4.7863 -12.5805 0.5053 20 6 5.8870 -11.4954 2.2888 21 6 6.6097 -12.8129 2.4029 22 7 7.7408 -13.1324 1.7754 23 6 8.0964 -14.3504 2.0942 24 7 7.1815 -14.8422 2.9476 25 1 7.1802 -15.7227 3.3547 26 7 6.2280 -13.8278 3.1328 27 6 3.9656 -9.1319 1.4002 28 1 -0.4851 0.8400 0.0004 29 1 3.1246 -3.7313 0.8894 30 1 3.1245 -3.7313 -0.8905 31 1 3.8011 -6.1834 -0.0006 32 1 1.7211 -7.8755 -0.8884 33 1 1.7229 -7.8747 0.8915 34 1 4.3106 -8.4050 -0.6709 35 1 3.2784 -10.5964 -1.1071 36 1 2.0773 -10.3696 0.2348 37 1 5.3606 -11.2875 3.2203 38 1 6.6081 -10.7015 2.0940 39 1 8.9699 -14.8717 1.7314 40 1 3.1860 -9.0550 2.1580 41 1 4.9032 -8.6711 1.7110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498474269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:35 Heat of formation + Delta-G solvation = 56.381570 kcal Electronic energy + Delta-G solvation = -24800.675555 eV Core-core repulsion = 20845.423185 eV Total energy + Delta-G solvation = -3955.252370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.56478 -40.88502 -39.17129 -38.25453 -34.54244 -33.78121 -32.43990 -32.20566 -31.28263 -29.82864 -28.65137 -26.45295 -25.81474 -25.33848 -23.28551 -21.75320 -20.93523 -20.30563 -19.34999 -18.76814 -17.91456 -17.52687 -16.75125 -16.41432 -16.25183 -15.93635 -15.55545 -15.31812 -15.16822 -14.81429 -14.57743 -14.00175 -13.87385 -13.74081 -13.36409 -13.11300 -13.03842 -12.66041 -12.61712 -12.53729 -12.38641 -11.82110 -11.71334 -11.08145 -11.03184 -11.02761 -10.76554 -10.66847 -10.51416 -10.34589 -10.01680 -9.81661 -9.45264 -9.13665 -9.09020 -8.94396 -8.24461 -6.51249 -6.22873 -3.93477 1.13680 2.07221 2.22027 2.27795 2.64197 2.98751 3.06372 3.20972 3.27075 3.31284 3.57467 3.60830 3.91977 4.04454 4.13301 4.19327 4.41815 4.45559 4.62083 4.80455 4.86468 4.97095 4.99731 5.04657 5.12593 5.14702 5.22479 5.30778 5.46406 5.56065 5.67838 5.71961 5.86494 5.88291 5.89248 6.12383 6.54420 6.54960 7.26961 7.58845 7.59906 7.65101 7.73772 8.34337 8.57248 9.22779 10.84612 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.001496 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.859350 B =18713.574984 C =19357.957093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.739 5.739 14 C 0.133 3.867 15 C -0.136 4.136 16 C 0.116 3.884 17 N -0.649 5.649 18 C 0.553 3.447 19 O -0.530 6.530 20 C -0.042 4.042 21 C 0.247 3.753 22 N -0.534 5.534 23 C 0.264 3.736 24 N -0.483 5.483 25 H 0.443 0.557 26 N -0.303 5.303 27 C 0.101 3.899 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.224 0.776 40 H 0.094 0.906 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.936 -27.510 5.423 32.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.394 5.394 14 C 0.008 3.992 15 C -0.155 4.155 16 C -0.007 4.007 17 N -0.386 5.386 18 C 0.341 3.659 19 O -0.406 6.406 20 C -0.084 4.084 21 C -0.037 4.037 22 N -0.262 5.262 23 C -0.035 4.035 24 N -0.201 5.201 25 H 0.288 0.712 26 N -0.132 5.132 27 C -0.022 4.022 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.240 0.760 40 H 0.112 0.888 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.386 -28.244 5.333 32.142 hybrid contribution 2.672 0.541 0.231 2.736 sum 17.058 -27.703 5.564 33.006 Atomic orbital electron populations 1.70021 1.05959 1.27368 1.46926 1.24988 0.95013 0.99034 0.94523 0.86121 0.79587 0.81903 0.77905 1.19614 1.20576 1.20575 1.22909 0.94946 0.91637 1.58869 0.90852 1.85412 1.04945 0.96391 1.96720 1.23528 1.06579 0.95353 1.04967 1.20311 0.86503 0.86291 0.75093 1.90714 1.15388 1.85599 1.47376 1.45970 1.10005 1.05247 1.78166 1.21136 0.94550 0.80325 1.03142 1.23289 0.99637 0.94611 0.97990 1.22937 0.92159 0.91663 0.93977 1.49496 1.38929 1.13741 1.36422 1.19704 0.80686 0.81121 0.84358 1.90753 1.68659 1.29488 1.51655 1.19784 0.97166 0.92061 0.99401 1.23259 0.91818 0.95431 0.93160 1.70356 1.14891 1.13851 1.27141 1.26097 0.95615 0.91133 0.90638 1.48083 1.18892 1.15884 1.37215 0.71184 1.77979 1.12187 0.97639 1.25438 1.23333 1.02245 0.79798 0.96807 0.92225 0.89177 0.89187 0.76700 0.90734 0.90908 0.86776 0.89866 0.89053 0.86332 0.85842 0.75954 0.88768 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.82 13.22 55.49 0.73 -25.09 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.07 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.95 9.50 30.94 0.29 -14.65 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.91 6.16 36.00 0.22 -2.69 16 11 C 0.53 9.08 7.85 -10.99 -0.09 9.00 16 12 O -0.52 -11.06 15.86 5.56 0.09 -10.98 16 13 N -0.74 -8.14 5.56 -60.30 -0.34 -8.48 16 14 C 0.13 1.18 5.59 -4.05 -0.02 1.16 16 15 C -0.14 -0.81 4.11 -89.97 -0.37 -1.18 16 16 C 0.12 0.84 8.19 -8.49 -0.07 0.77 16 17 N -0.65 -5.29 3.69 -185.01 -0.68 -5.97 16 18 C 0.55 5.87 8.07 -10.98 -0.09 5.78 16 19 O -0.53 -8.00 16.81 5.56 0.09 -7.90 16 20 C -0.04 -0.33 6.16 -29.03 -0.18 -0.51 16 21 C 0.25 2.56 6.63 -156.86 -1.04 1.52 16 22 N -0.53 -5.33 11.19 -11.98 -0.13 -5.46 16 23 C 0.26 1.57 13.13 -90.65 -1.19 0.38 16 24 N -0.48 -2.98 7.45 29.53 0.22 -2.76 16 25 H 0.44 0.97 8.96 -182.33 -1.63 -0.66 16 26 N -0.30 -3.12 12.80 32.42 0.41 -2.70 16 27 C 0.10 0.54 8.00 -8.36 -0.07 0.47 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 30 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 31 H 0.40 3.18 8.47 -40.82 -0.35 2.83 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.68 7.81 -51.93 -0.41 0.28 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 37 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.22 0.13 8.06 -52.49 -0.42 -0.30 16 40 H 0.09 0.45 7.88 -51.93 -0.41 0.04 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -42.10 377.44 -10.41 -52.51 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.57 Total: -3.08 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.69 Total: 2.00 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.22 Total: -50.46 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.18 Total: -18.88 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -42.10 -10.41 -52.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498474269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.894 kcal (2) G-P(sol) polarization free energy of solvation -42.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds