Wall clock time and date at job start Tue Mar 31 2020 22:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46981 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47072 * 300.00335 * 3 2 1 6 6 H 1.48495 * 109.46829 * 60.00193 * 3 2 1 7 7 C 1.38795 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00174 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00206 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00324 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47498 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99609 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00097 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99976 * 179.97438 * 13 11 10 15 15 C 1.52988 * 109.47306 * 179.97438 * 14 13 11 16 16 C 1.53500 * 114.20813 * 185.00211 * 15 14 13 17 17 N 1.47074 * 87.98480 * 220.14828 * 16 15 14 18 18 C 1.34778 * 136.05522 * 207.07880 * 17 16 15 19 19 O 1.21280 * 120.00033 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.99643 * 180.02562 * 18 17 16 21 21 C 1.50703 * 109.46943 * 180.02562 * 20 18 17 22 22 N 1.33233 * 125.52686 * 89.99782 * 21 20 18 23 23 C 1.30834 * 109.82996 * 180.02562 * 22 21 20 24 24 N 1.34429 * 108.07543 * 0.02562 * 23 22 21 25 25 H 0.97003 * 126.82753 * 179.97438 * 24 23 22 26 26 N 1.30708 * 125.52235 * 270.04470 * 21 20 18 27 27 C 1.47067 * 87.88541 * 27.34082 * 17 16 15 28 28 H 0.96996 * 120.00602 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47302 * 59.99551 * 10 9 7 30 30 H 1.08997 * 109.46824 * 300.00310 * 10 9 7 31 31 H 0.97001 * 120.00235 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.46604 * 59.99587 * 14 13 11 33 33 H 1.08995 * 109.47187 * 300.00563 * 14 13 11 34 34 H 1.09004 * 113.28635 * 318.07078 * 15 14 13 35 35 H 1.08996 * 113.46886 * 105.37390 * 16 15 14 36 36 H 1.09000 * 113.52050 * 334.93695 * 16 15 14 37 37 H 1.08993 * 109.46656 * 60.00225 * 20 18 17 38 38 H 1.09000 * 109.47151 * 300.00224 * 20 18 17 39 39 H 1.07995 * 125.96739 * 179.74246 * 23 22 21 40 40 H 1.09000 * 113.46799 * 87.43468 * 27 17 16 41 41 H 1.08994 * 113.46580 * 217.87720 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9876 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0010 13 7 2.8443 -6.3430 -0.0003 14 6 2.3307 -7.7151 0.0009 15 6 3.5026 -8.6984 -0.0005 16 6 3.0882 -10.1715 -0.1215 17 7 4.1305 -10.4919 0.8654 18 6 4.8956 -11.5628 1.1558 19 8 4.7863 -12.5805 0.5053 20 6 5.8870 -11.4954 2.2888 21 6 6.6097 -12.8129 2.4029 22 7 7.7408 -13.1324 1.7754 23 6 8.0964 -14.3504 2.0942 24 7 7.1815 -14.8422 2.9476 25 1 7.1802 -15.7227 3.3547 26 7 6.2280 -13.8278 3.1328 27 6 3.9656 -9.1319 1.4002 28 1 -0.4851 0.8400 0.0004 29 1 3.1246 -3.7313 0.8894 30 1 3.1245 -3.7313 -0.8905 31 1 3.8011 -6.1834 -0.0006 32 1 1.7211 -7.8755 -0.8884 33 1 1.7229 -7.8747 0.8915 34 1 4.3106 -8.4050 -0.6709 35 1 3.2784 -10.5964 -1.1071 36 1 2.0773 -10.3696 0.2348 37 1 5.3606 -11.2875 3.2203 38 1 6.6081 -10.7015 2.0940 39 1 8.9699 -14.8717 1.7314 40 1 3.1860 -9.0550 2.1580 41 1 4.9032 -8.6711 1.7110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498474269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:34 Heat of formation + Delta-G solvation = 23.358974 kcal Electronic energy + Delta-G solvation = -24802.107522 eV Core-core repulsion = 20845.423185 eV Total energy + Delta-G solvation = -3956.684337 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.10945 -41.55411 -40.40637 -39.09642 -35.64906 -34.54675 -34.36523 -32.81506 -32.17494 -30.87548 -29.52404 -27.66592 -26.96876 -26.46937 -23.79035 -22.42145 -21.82777 -21.29612 -19.99293 -19.74978 -19.26903 -18.24379 -17.71593 -17.53791 -17.09265 -16.84689 -16.65952 -16.51279 -16.10051 -16.01721 -15.68239 -15.34146 -14.73072 -14.56721 -14.44066 -14.29269 -14.00470 -13.58289 -13.49583 -13.20462 -13.11553 -13.07174 -12.99129 -12.87408 -12.56490 -12.35996 -11.68927 -11.61060 -11.30700 -11.12531 -11.12174 -11.02318 -10.87462 -10.65326 -10.20979 -10.01458 -9.80180 -8.61462 -8.31304 -6.08358 0.60416 1.31709 1.44005 1.46857 1.50815 1.56343 1.63050 1.71023 1.81876 2.05898 2.29549 2.36514 3.03255 3.12114 3.24451 3.39811 3.47321 3.63696 3.85805 3.99557 4.11614 4.13892 4.24634 4.37886 4.39600 4.46283 4.50625 4.60394 4.61163 4.64579 4.79054 4.82675 4.88203 5.20030 5.25678 5.31481 5.46230 5.53027 6.23402 6.23814 6.59628 6.63711 7.00751 7.05929 7.10706 7.34966 8.78043 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.001496 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.859350 B =18713.574984 C =19357.957093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.568 6.568 13 N -0.709 5.709 14 C 0.135 3.865 15 C -0.115 4.115 16 C 0.106 3.894 17 N -0.649 5.649 18 C 0.548 3.452 19 O -0.586 6.586 20 C -0.038 4.038 21 C 0.229 3.771 22 N -0.575 5.575 23 C 0.275 3.725 24 N -0.475 5.475 25 H 0.458 0.542 26 N -0.342 5.342 27 C 0.104 3.896 28 H 0.270 0.730 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.419 0.581 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.273 0.727 40 H 0.104 0.896 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.062 -27.543 5.976 34.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.446 6.446 13 N -0.363 5.363 14 C 0.010 3.990 15 C -0.135 4.135 16 C -0.017 4.017 17 N -0.384 5.384 18 C 0.338 3.662 19 O -0.466 6.466 20 C -0.080 4.080 21 C -0.054 4.054 22 N -0.304 5.304 23 C -0.023 4.023 24 N -0.195 5.195 25 H 0.307 0.693 26 N -0.172 5.172 27 C -0.017 4.017 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.257 0.743 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.147 0.853 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.288 0.712 40 H 0.122 0.878 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.567 -28.303 5.910 33.831 hybrid contribution 1.755 0.369 0.039 1.794 sum 19.322 -27.933 5.949 34.482 Atomic orbital electron populations 1.70186 1.07980 1.28463 1.48245 1.26098 0.95910 1.03269 0.93845 0.84928 0.78713 0.76496 0.77950 1.17912 1.20156 1.20058 1.23253 0.95393 0.92048 1.58499 0.89798 1.85598 1.10890 0.99347 1.97045 1.23380 1.03360 0.94438 1.06941 1.20005 0.86206 0.86672 0.75145 1.90707 1.17573 1.86112 1.50225 1.45657 1.10386 1.04793 1.75474 1.21222 0.95668 0.79295 1.02777 1.23095 0.98643 0.92661 0.99057 1.23065 0.92473 0.92427 0.93690 1.49560 1.38208 1.14203 1.36425 1.20181 0.80955 0.80691 0.84359 1.90716 1.70486 1.31687 1.53747 1.19896 0.97013 0.91976 0.99082 1.23688 0.92250 0.96217 0.93237 1.70344 1.15528 1.15967 1.28555 1.27030 0.95997 0.90233 0.89044 1.48031 1.18207 1.16041 1.37204 0.69338 1.77862 1.14026 0.98649 1.26676 1.23530 1.03973 0.77886 0.96354 0.92085 0.86926 0.87227 0.74337 0.91662 0.90984 0.85312 0.90711 0.88522 0.84379 0.83672 0.71196 0.87806 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.32 13.22 21.65 0.29 -55.03 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 42.77 29.55 68.60 2.03 44.80 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -30.27 9.50 67.95 0.65 -29.63 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.16 -8.38 20.57 -56.49 -1.16 -9.54 16 10 C -0.13 -4.72 6.16 71.23 0.44 -4.28 16 11 C 0.53 17.50 7.85 87.66 0.69 18.19 16 12 O -0.57 -24.46 15.86 -3.04 -0.05 -24.51 16 13 N -0.71 -13.60 5.56 -463.08 -2.57 -16.18 16 14 C 0.13 2.09 5.59 86.37 0.48 2.58 16 15 C -0.12 -1.06 4.11 -10.37 -0.04 -1.10 16 16 C 0.11 1.40 8.19 83.18 0.68 2.08 16 17 N -0.65 -9.47 3.69 -857.63 -3.16 -12.63 16 18 C 0.55 11.27 8.07 87.66 0.71 11.98 16 19 O -0.59 -18.09 16.81 -3.03 -0.05 -18.14 16 20 C -0.04 -0.55 6.16 29.10 0.18 -0.37 16 21 C 0.23 4.64 6.63 138.64 0.92 5.56 16 22 N -0.57 -10.93 11.19 -191.81 -2.15 -13.08 16 23 C 0.28 2.80 13.13 180.36 2.37 5.17 16 24 N -0.48 -5.37 7.45 -60.49 -0.45 -5.82 16 25 H 0.46 1.47 8.96 -213.09 -1.91 -0.44 16 26 N -0.34 -6.94 12.80 -51.34 -0.66 -7.60 16 27 C 0.10 0.77 8.00 83.27 0.67 1.43 16 28 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 29 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 30 H 0.11 3.56 8.14 -2.40 -0.02 3.54 16 31 H 0.42 4.91 8.47 -92.71 -0.79 4.12 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.21 7.81 -2.39 -0.02 1.19 16 34 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.18 8.11 -2.39 -0.02 1.16 16 37 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.27 -0.54 8.06 -2.91 -0.02 -0.57 16 40 H 0.10 0.65 7.88 -2.39 -0.02 0.63 16 41 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -96.64 377.44 -1.34 -97.98 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -1.60 Total: 6.95 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 8.20 Total: 12.81 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -8.70 Total: -110.34 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.10 Total: -42.65 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -96.64 -1.34 -97.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498474269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.335 kcal (2) G-P(sol) polarization free energy of solvation -96.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds